>Q5F5R5:RPOB_NEIG1 DNA-directed RNA polymerase beta chain - Neisseria gonorrhoeae|
            (strain ATCC 700825 / FA 1090)
          Length = 1392
 Score = 33.1 bits (74), Expect = 1.8
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
 Frame = +3

Query: 255  RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 434
            RRKAG+  E  N  YN  G+K  + SL +   I       SN +   S A  V  +G   
Sbjct: 1176 RRKAGELREFLNKLYNGSGKKEDLDSLTDEEII----ELASNLRKGASFASPV-FDGAKE 1230

Query: 435  SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 551
            SE  ++L+  + +      DP       NDS  +  +Y G  G ++
Sbjct: 1231 SEIREMLNLAYPS-----EDPEVEKLGFNDSKTQITLYDGRSGEAF 1271

>Q9XPS4:PSBC_WHEAT Photosystem II 44 kDa reaction center protein - Triticum aestivum|
           (Wheat)
          Length = 473

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 399 HARLVPLEG--CSASEASQLLSERWAAAMNMYNDPNDSPDKPVMYAGSGGSSWGQGHMKL 572
           +ARL+ L G    A  A   L   WA AMN++   +  P+KP+         +GQG + L
Sbjct: 39  NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPM---------YGQGLILL 89

Query: 573 PH 578
           PH
Sbjct: 90  PH 91

>Q6L8G4:KR511_HUMAN Keratin-associated protein 5-11 - Homo sapiens (Human)|
          Length = 156

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 342 GSLVKEHGSSLHHCCMNSWLSQPYLQPCGDCLHDSCAREACIS*CC 205
           GS   +   S   CC +S       +PC  C   SC + +C   CC
Sbjct: 98  GSFCCQSSCSKPCCCQSSCCQSSCCKPC--CCQSSCCQSSCFKPCC 141

>Q03177:YMZ2_YEAST WD repeat protein YMR102C - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 834

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +3

Query: 189 ADTNPDSIKRYTPPVHRNRANNRRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHH-- 362
           +D   D  +    P    R+ + R    ++   + S NN+ +  H   L NL P+ HH  
Sbjct: 507 SDRENDQDEPKRKPKGLARSGSLRSIFSKSMSRSSSQNNEEKPHHHLKLTNLLPLPHHSN 566

Query: 363 DAFVSNAQNDYSHARLVPLEGCSAS--EASQLLS 458
           D ++ N      HA   P+   S +  E S+ LS
Sbjct: 567 DHYIKNTDYISFHAHNAPVTCVSIAPPETSKTLS 600

>Q9Y6X0:SETBP_HUMAN SET-binding protein - Homo sapiens (Human)|
          Length = 1542

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 204 DSIKRYTPPVHRNRANNRRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNA 383
           D I +  P    +   N +KA D  E     Y+ D  +   P+ +N+       +  SN 
Sbjct: 287 DVISQTIPNPDLDWVKNAQKAFDNTEGKREGYSADSAQEASPARQNV-------SSASNP 339

Query: 384 QNDYSHARL-VPLEGCSASEASQLLSER 464
           +ND SH R+ +P++  S    +    +R
Sbjct: 340 ENDSSHVRITIPIKAPSLDPTNHKRKKR 367

>Q59622:RPOB_NEIMB DNA-directed RNA polymerase beta chain - Neisseria meningitidis|
            serogroup B
          Length = 1392

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +3

Query: 255  RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 434
            +RKAG+  E  N  YN  G+K  + +L +   I       SN +   S A  V  +G   
Sbjct: 1176 QRKAGELREFLNRLYNGSGKKEDLDALTDEEII----ELASNLRKGASFASPV-FDGAKE 1230

Query: 435  SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 551
            SE  ++L+  + +     +DP       NDS  +  +Y G  G ++
Sbjct: 1231 SEIREMLNLAYPS-----DDPEVEKLGFNDSKTQITLYDGRSGEAF 1271

>P57009:RPOB_NEIMA DNA-directed RNA polymerase beta chain - Neisseria meningitidis|
            serogroup A
          Length = 1392

 Score = 30.8 bits (68), Expect = 8.9
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +3

Query: 255  RRKAGDRAEKANYSYNNDGEKSHVPSLKNLPPIIHHDAFVSNAQNDYSHARLVPLEGCSA 434
            +RKAG+  E  N  YN  G+K  + +L +   I       SN +   S A  V  +G   
Sbjct: 1176 QRKAGELREFLNRLYNGSGKKEDLDALTDEEII----ELASNLRKGASFASPV-FDGAKE 1230

Query: 435  SEASQLLSERWAAAMNMYNDP-------NDSPDKPVMYAGSGGSSW 551
            SE  ++L+  + +     +DP       NDS  +  +Y G  G ++
Sbjct: 1231 SEIREMLNLAYPS-----DDPEVEKLGFNDSKTQITLYDGRSGEAF 1271


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 166,880,358
Number of extensions: 3636092
Number of successful extensions: 10126
Number of sequences better than 10.0: 7
Number of HSP's gapped: 10117
Number of HSP's successfully gapped: 7
Length of query: 328
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 215
Effective length of database: 69,691,104
Effective search space: 14983587360
Effective search space used: 14983587360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)