ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf133f22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001063639.1| Oryza sativa (japonica cultivar-group) Os06g0208700 (Os06g0208700) mRNA, complete cds Length = 1122 Score = 545 bits (275), Expect = e-151 Identities = 425/475 (89%) Strand = Plus / Plus Query: 224 ccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgctgcc 283 |||||||||||||| ||||||||||||||||||| ||||||||||||||| || || ||| Sbjct: 326 ccgctcaacttcgcgatggtcgacgacggcatcttccgctccggcttccccgcggccgcc 385 Query: 284 aacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggagccg 343 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 386 aacttccggttcctcaagtcgctcaacctccgctccatcgtgtacctgtgcccggagccg 445 Query: 344 tacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttcgga 403 ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 446 tacccggagacgaacgcggagttcctcgccaagaacgggatcaagctccaccagttcgga 505 Query: 404 atcgagggccgcaaggagccattcgtcgagatacccgatgagaaaatccgggaggcactt 463 |||||||| |||||||| ||||||||| | || || || || ||||| || ||||| || Sbjct: 506 atcgaggggcgcaaggaaccattcgtcaacatccctgacgacaaaattcgagaggcgctc 565 Query: 464 aaagttgtcctagatgtaagaaatcaacctctgcttattcactgcaagagaggcaagcac 523 |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| Sbjct: 566 aaagttgtcctagacgtaaaaaaccaacctctgcttattcactgcaagagaggcaagcac 625 Query: 524 cgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtc 583 || || || |||||||| || ||| |||||||| | |||||||||||| |||| || || Sbjct: 626 cgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtcttcagtg 685 Query: 584 tttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagattcatg 643 || |||||||||||||||||||| |||||||| | |||||||||||| | |||||||||| Sbjct: 686 ttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagattcatg 745 Query: 644 gagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 698 |||||||||||| || | ||||||||||||||||| | |||||||||||||||| Sbjct: 746 gagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 800 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaagcagagggccctggaggcggggcagcgggaggaggc 108 |||||||||||| | ||||| |||||||||||| ||||||| | |||| |||||||||| Sbjct: 115 catgaagctggaggtgatgccgaagcagagggccatggaggccgagcagagggaggaggc 174 Query: 109 catggagatgagcggcctggagctgtggaagcacgagaagcc 150 ||||||||||||||| || ||||||||||||||||||||||| Sbjct: 175 catggagatgagcgggctcgagctgtggaagcacgagaagcc 216 Score = 99.6 bits (50), Expect = 2e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 867 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 926 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 957 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 1016 Query: 927 gggtaggattgcaagaggtttt 948 |||||||||||||||||||||| Sbjct: 1017 gggtaggattgcaagaggtttt 1038 Score = 65.9 bits (33), Expect = 3e-07 Identities = 56/61 (91%), Gaps = 2/61 (3%) Strand = Plus / Plus Query: 954 tcttgcgatgaattcacca-ttgttttcgggtactgaagctctgtactcgagcagcattg 1012 |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 1063 tcttgcgaggaattcaccaattgttttcgggtactgaaag-ctgtactcgagcagcattg 1121 Query: 1013 c 1013 | Sbjct: 1122 c 1122 Score = 56.0 bits (28), Expect = 3e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 781 tcagcagtgaataatttttggaacccgtagaatgaa 816 |||||||||||||||||| ||||||||||||||||| Sbjct: 890 tcagcagtgaataatttt-ggaacccgtagaatgaa 924
>gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein mRNA, complete cds Length = 1119 Score = 545 bits (275), Expect = e-151 Identities = 425/475 (89%) Strand = Plus / Plus Query: 224 ccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgctgcc 283 |||||||||||||| ||||||||||||||||||| ||||||||||||||| || || ||| Sbjct: 323 ccgctcaacttcgcgatggtcgacgacggcatcttccgctccggcttccccgcggccgcc 382 Query: 284 aacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggagccg 343 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 383 aacttccggttcctcaagtcgctcaacctccgctccatcgtgtacctgtgcccggagccg 442 Query: 344 tacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttcgga 403 ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 443 tacccggagacgaacgcggagttcctcgccaagaacgggatcaagctccaccagttcgga 502 Query: 404 atcgagggccgcaaggagccattcgtcgagatacccgatgagaaaatccgggaggcactt 463 |||||||| |||||||| ||||||||| | || || || || ||||| || ||||| || Sbjct: 503 atcgaggggcgcaaggaaccattcgtcaacatccctgacgacaaaattcgagaggcgctc 562 Query: 464 aaagttgtcctagatgtaagaaatcaacctctgcttattcactgcaagagaggcaagcac 523 |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| Sbjct: 563 aaagttgtcctagacgtaaaaaaccaacctctgcttattcactgcaagagaggcaagcac 622 Query: 524 cgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtc 583 || || || |||||||| || ||| |||||||| | |||||||||||| |||| || || Sbjct: 623 cgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtcttcagtg 682 Query: 584 tttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagattcatg 643 || |||||||||||||||||||| |||||||| | |||||||||||| | |||||||||| Sbjct: 683 ttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagattcatg 742 Query: 644 gagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 698 |||||||||||| || | ||||||||||||||||| | |||||||||||||||| Sbjct: 743 gagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 797 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaagcagagggccctggaggcggggcagcgggaggaggc 108 |||||||||||| | ||||| |||||||||||| ||||||| | |||| |||||||||| Sbjct: 115 catgaagctggaggtgatgccgaagcagagggccatggaggccgagcagagggaggaggc 174 Query: 109 catggagatgagcggcctggagctgtggaagcacgagaagcc 150 ||||||||||||||| || ||||||||||||||||||||||| Sbjct: 175 catggagatgagcgggctcgagctgtggaagcacgagaagcc 216 Score = 99.6 bits (50), Expect = 2e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 867 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 926 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 954 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 1013 Query: 927 gggtaggattgcaagaggtttt 948 |||||||||||||||||||||| Sbjct: 1014 gggtaggattgcaagaggtttt 1035 Score = 65.9 bits (33), Expect = 3e-07 Identities = 56/61 (91%), Gaps = 2/61 (3%) Strand = Plus / Plus Query: 954 tcttgcgatgaattcacca-ttgttttcgggtactgaagctctgtactcgagcagcattg 1012 |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 1060 tcttgcgaggaattcaccaattgttttcgggtactgaaag-ctgtactcgagcagcattg 1118 Query: 1013 c 1013 | Sbjct: 1119 c 1119 Score = 56.0 bits (28), Expect = 3e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 781 tcagcagtgaataatttttggaacccgtagaatgaa 816 |||||||||||||||||| ||||||||||||||||| Sbjct: 887 tcagcagtgaataatttt-ggaacccgtagaatgaa 921
>dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L18, full insert sequence Length = 3738 Score = 293 bits (148), Expect = 7e-76 Identities = 184/196 (93%) Strand = Plus / Plus Query: 224 ccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgctgcc 283 |||||||||||||| ||||||||||||||||||| ||||||||||||||| || || ||| Sbjct: 327 ccgctcaacttcgcgatggtcgacgacggcatcttccgctccggcttccccgcggccgcc 386 Query: 284 aacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggagccg 343 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct: 387 aacttccggttcctcaagtcgctcaacctccgctccatcgtgtacctgtgcccggagccg 446 Query: 344 tacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttcgga 403 ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 447 tacccggagacgaacgcggagttcctcgccaagaacgggatcaagctccaccagttcgga 506 Query: 404 atcgagggccgcaagg 419 |||||||| ||||||| Sbjct: 507 atcgaggggcgcaagg 522 Score = 258 bits (130), Expect = 4e-65 Identities = 244/282 (86%) Strand = Plus / Plus Query: 417 aggagccattcgtcgagatacccgatgagaaaatccgggaggcacttaaagttgtcctag 476 |||| ||||||||| | || || || || ||||| || ||||| || ||||||||||||| Sbjct: 3109 aggaaccattcgtcaacatccctgacgacaaaattcgagaggcgctcaaagttgtcctag 3168 Query: 477 atgtaagaaatcaacctctgcttattcactgcaagagaggcaagcaccgaactggatgcg 536 | |||| ||| |||||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 3169 acgtaaaaaaccaacctctgcttattcactgcaagagaggcaagcaccgcaccggctgcg 3228 Query: 537 tcgttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacc 596 |||| || ||| |||||||| | |||||||||||| |||| || || || |||||||||| Sbjct: 3229 tcgtggggtgcttgaggaagcttcagaaatggtgcttgtcttcagtgttcgacgagtacc 3288 Query: 597 agcgcttcgctgctgcgaaagtgaggagcaccgacctgagattcatggagctgttcgacg 656 |||||||||| |||||||| | |||||||||||| | |||||||||||||||||||||| Sbjct: 3289 agcgcttcgccgctgcgaaggcgaggagcaccgatcagagattcatggagctgttcgaca 3348 Query: 657 tcgcgagcttgaagcacctgaccacctcacattgttaaccaa 698 || | ||||||||||||||||| | |||||||||||||||| Sbjct: 3349 tctcaagcttgaagcacctgacagcttcacattgttaaccaa 3390 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaagcagagggccctggaggcggggcagcgggaggaggc 108 |||||||||||| | ||||| |||||||||||| ||||||| | |||| |||||||||| Sbjct: 116 catgaagctggaggtgatgccgaagcagagggccatggaggccgagcagagggaggaggc 175 Query: 109 catggagatgagcggcctggagctgtggaagcacgagaagcc 150 ||||||||||||||| || ||||||||||||||||||||||| Sbjct: 176 catggagatgagcgggctcgagctgtggaagcacgagaagcc 217 Score = 99.6 bits (50), Expect = 2e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 867 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 926 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 3547 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 3606 Query: 927 gggtaggattgcaagaggtttt 948 |||||||||||||||||||||| Sbjct: 3607 gggtaggattgcaagaggtttt 3628 Score = 67.9 bits (34), Expect = 7e-08 Identities = 57/62 (91%), Gaps = 2/62 (3%) Strand = Plus / Plus Query: 954 tcttgcgatgaattcacca-ttgttttcgggtactgaagctctgtactcgagcagcattg 1012 |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 3653 tcttgcgaggaattcaccaattgttttcgggtactgaaag-ctgtactcgagcagcattg 3711 Query: 1013 ct 1014 || Sbjct: 3712 ct 3713 Score = 56.0 bits (28), Expect = 3e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 781 tcagcagtgaataatttttggaacccgtagaatgaa 816 |||||||||||||||||| ||||||||||||||||| Sbjct: 3480 tcagcagtgaataatttt-ggaacccgtagaatgaa 3514
>gb|AY103994.1| Zea mays PCO089335 mRNA sequence Length = 730 Score = 228 bits (115), Expect = 3e-56 Identities = 226/263 (85%) Strand = Plus / Plus Query: 434 atacccgatgagaaaatccgggaggcacttaaagttgtcctagatgtaagaaatcaacct 493 ||||||||||| ||||| ||||||| || ||||||||| |||| |||||| |||||| Sbjct: 12 atacccgatgacaaaataagggaggcgctcaaagttgtcttagacccaagaaaccaacct 71 Query: 494 ctgcttattcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgagg 553 ||||||||||| || ||||||||||||||||||||||| || | || || ||| ||||| Sbjct: 72 ctgcttattcattgtaagagaggcaagcaccgaactggttgtttggtcgggtgcttgagg 131 Query: 554 aagttgcagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcg 613 ||| |||||||||||||| |||| || ||||| ||||||||||| ||||| || |||||| Sbjct: 132 aagctgcagaaatggtgcttgtcttcagtcttcgacgagtaccatcgctttgccgctgcg 191 Query: 614 aaagtgaggagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcac 673 |||| | | | ||| |||| ||||||||||||||||||||||||| | |||||||||||| Sbjct: 192 aaagcgcgaatcactgaccagagattcatggagctgttcgacgtctcaagcttgaagcac 251 Query: 674 ctgaccacctcacattgttaacc 696 ||||| |||||||||||||||| Sbjct: 252 ctgacaccctcacattgttaacc 274 Score = 46.1 bits (23), Expect = 0.26 Identities = 32/35 (91%) Strand = Plus / Plus Query: 958 gcgatgaattcaccattgttttcgggtactgaagc 992 |||| |||||| |||||||||| |||||||||||| Sbjct: 524 gcgaggaattcgccattgtttttgggtactgaagc 558 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 770 actgaaccgactcagcagtgaataatttt 798 |||||||||| ||||| |||||||||||| Sbjct: 342 actgaaccgattcagccgtgaataatttt 370
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 167 bits (84), Expect = 1e-37 Identities = 156/180 (86%) Strand = Plus / Plus Query: 519 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 578 ||||||| || || |||||||| || ||| |||||||| | |||||||||||| |||| | Sbjct: 5569364 agcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtctt 5569423 Query: 579 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 638 | || || |||||||||||||||||||| |||||||| | |||||||||||| | ||||| Sbjct: 5569424 cagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagat 5569483 Query: 639 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 698 ||||||||||||||||| || | ||||||||||||||||| | |||||||||||||||| Sbjct: 5569484 tcatggagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 5569543 Score = 149 bits (75), Expect = 2e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 224 ccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgctgcc 283 |||||||||||||| ||||||||||||||||||| ||||||||||||||| || || ||| Sbjct: 5566149 ccgctcaacttcgcgatggtcgacgacggcatcttccgctccggcttccccgcggccgcc 5566208 Query: 284 aacttccgcttcctcaagtccctcaacctccgctccatcgtgt 326 |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 5566209 aacttccggttcctcaagtcgctcaacctccgctccatcgtgt 5566251 Score = 149 bits (75), Expect = 2e-32 Identities = 90/95 (94%) Strand = Plus / Plus Query: 325 gtacctctgcccggagccgtacccggagaccaacacggagttcctcgacaagaacgggat 384 |||||| ||||||||||||||||||||||| ||| |||||||||||| |||||||||||| Sbjct: 5566383 gtacctgtgcccggagccgtacccggagacgaacgcggagttcctcgccaagaacgggat 5566442 Query: 385 caagctccaccagttcggaatcgagggccgcaagg 419 ||||||||||||||||||||||||||| ||||||| Sbjct: 5566443 caagctccaccagttcggaatcgaggggcgcaagg 5566477 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaagcagagggccctggaggcggggcagcgggaggaggc 108 |||||||||||| | ||||| |||||||||||| ||||||| | |||| |||||||||| Sbjct: 5565938 catgaagctggaggtgatgccgaagcagagggccatggaggccgagcagagggaggaggc 5565997 Query: 109 catggagatgagcggcctggagctgtggaagcacgagaagcc 150 ||||||||||||||| || ||||||||||||||||||||||| Sbjct: 5565998 catggagatgagcgggctcgagctgtggaagcacgagaagcc 5566039 Score = 99.6 bits (50), Expect = 2e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 867 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 926 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 5569700 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 5569759 Query: 927 gggtaggattgcaagaggtttt 948 |||||||||||||||||||||| Sbjct: 5569760 gggtaggattgcaagaggtttt 5569781 Score = 67.9 bits (34), Expect = 7e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 479 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 |||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 5569216 gtaaaaaaccaacctctgcttattcactgcaagagaggcaag 5569257 Score = 67.9 bits (34), Expect = 7e-08 Identities = 57/62 (91%), Gaps = 2/62 (3%) Strand = Plus / Plus Query: 954 tcttgcgatgaattcacca-ttgttttcgggtactgaagctctgtactcgagcagcattg 1012 |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 5569806 tcttgcgaggaattcaccaattgttttcgggtactgaaag-ctgtactcgagcagcattg 5569864 Query: 1013 ct 1014 || Sbjct: 5569865 ct 5569866 Score = 56.0 bits (28), Expect = 3e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 781 tcagcagtgaataatttttggaacccgtagaatgaa 816 |||||||||||||||||| ||||||||||||||||| Sbjct: 5569633 tcagcagtgaataatttt-ggaacccgtagaatgaa 5569667
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 167 bits (84), Expect = 1e-37 Identities = 156/180 (86%) Strand = Plus / Plus Query: 519 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 578 ||||||| || || |||||||| || ||| |||||||| | |||||||||||| |||| | Sbjct: 116272 agcaccgcaccggctgcgtcgtggggtgcttgaggaagcttcagaaatggtgcttgtctt 116331 Query: 579 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 638 | || || |||||||||||||||||||| |||||||| | |||||||||||| | ||||| Sbjct: 116332 cagtgttcgacgagtaccagcgcttcgccgctgcgaaggcgaggagcaccgatcagagat 116391 Query: 639 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaaccaa 698 ||||||||||||||||| || | ||||||||||||||||| | |||||||||||||||| Sbjct: 116392 tcatggagctgttcgacatctcaagcttgaagcacctgacagcttcacattgttaaccaa 116451 Score = 149 bits (75), Expect = 2e-32 Identities = 96/103 (93%) Strand = Plus / Plus Query: 224 ccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgctgcc 283 |||||||||||||| ||||||||||||||||||| ||||||||||||||| || || ||| Sbjct: 113057 ccgctcaacttcgcgatggtcgacgacggcatcttccgctccggcttccccgcggccgcc 113116 Query: 284 aacttccgcttcctcaagtccctcaacctccgctccatcgtgt 326 |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 113117 aacttccggttcctcaagtcgctcaacctccgctccatcgtgt 113159 Score = 149 bits (75), Expect = 2e-32 Identities = 90/95 (94%) Strand = Plus / Plus Query: 325 gtacctctgcccggagccgtacccggagaccaacacggagttcctcgacaagaacgggat 384 |||||| ||||||||||||||||||||||| ||| |||||||||||| |||||||||||| Sbjct: 113291 gtacctgtgcccggagccgtacccggagacgaacgcggagttcctcgccaagaacgggat 113350 Query: 385 caagctccaccagttcggaatcgagggccgcaagg 419 ||||||||||||||||||||||||||| ||||||| Sbjct: 113351 caagctccaccagttcggaatcgaggggcgcaagg 113385 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaagcagagggccctggaggcggggcagcgggaggaggc 108 |||||||||||| | ||||| |||||||||||| ||||||| | |||| |||||||||| Sbjct: 112846 catgaagctggaggtgatgccgaagcagagggccatggaggccgagcagagggaggaggc 112905 Query: 109 catggagatgagcggcctggagctgtggaagcacgagaagcc 150 ||||||||||||||| || ||||||||||||||||||||||| Sbjct: 112906 catggagatgagcgggctcgagctgtggaagcacgagaagcc 112947 Score = 99.6 bits (50), Expect = 2e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 867 ttgagagctctattttttccctgctcaggtccctgcagatcctaagaaccagaaagttgt 926 ||||||| |||| |||| |||||| || ||||||||||||||| |||||||| |||||| Sbjct: 116608 ttgagagttctagttttctcctgcttagctccctgcagatcctatgaaccagacagttgt 116667 Query: 927 gggtaggattgcaagaggtttt 948 |||||||||||||||||||||| Sbjct: 116668 gggtaggattgcaagaggtttt 116689 Score = 67.9 bits (34), Expect = 7e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 479 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 |||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 116124 gtaaaaaaccaacctctgcttattcactgcaagagaggcaag 116165 Score = 67.9 bits (34), Expect = 7e-08 Identities = 57/62 (91%), Gaps = 2/62 (3%) Strand = Plus / Plus Query: 954 tcttgcgatgaattcacca-ttgttttcgggtactgaagctctgtactcgagcagcattg 1012 |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 116714 tcttgcgaggaattcaccaattgttttcgggtactgaaag-ctgtactcgagcagcattg 116772 Query: 1013 ct 1014 || Sbjct: 116773 ct 116774 Score = 56.0 bits (28), Expect = 3e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 781 tcagcagtgaataatttttggaacccgtagaatgaa 816 |||||||||||||||||| ||||||||||||||||| Sbjct: 116541 tcagcagtgaataatttt-ggaacccgtagaatgaa 116575
>gb|AF057522.1|AF057522 Zea mays hypoxically induced transcript 2 (HIT2) mRNA, partial cds Length = 312 Score = 159 bits (80), Expect = 3e-35 Identities = 176/208 (84%) Strand = Plus / Plus Query: 449 atccgggaggcacttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgc 508 ||||||||||| || ||||||||||| || |||||||| || || | || || |||||| Sbjct: 93 atccgggaggcgctcaaagttgtccttgacgtaagaaaccagccggtcctcatccactgc 152 Query: 509 aagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatgg 568 ||||||||| ||||||| ||||| |||||||| || ||| |||||||| ||||||| ||| Sbjct: 153 aagagaggcgagcaccggactggctgcgtcgtcggatgcctgaggaagctgcagaagtgg 212 Query: 569 tgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcacc 628 |||||||| || || || |||||||||| || |||||| || ||||| | ||||| |||| Sbjct: 213 tgcctgtcctccgtgttcgacgagtacctgcacttcgcggcggcgaaggcgaggaccacc 272 Query: 629 gacctgagattcatggagctgttcgacg 656 |||| ||| ||||||||||||||||||| Sbjct: 273 gaccagaggttcatggagctgttcgacg 300
>ref|NM_001054792.1| Oryza sativa (japonica cultivar-group) Os02g0771400 (Os02g0771400) mRNA, complete cds Length = 498 Score = 135 bits (68), Expect = 4e-28 Identities = 242/300 (80%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgct 280 |||||||| ||||||||| ||| |||||||||||| ||||||||| ||||| ||||| Sbjct: 142 ccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgcc 201 Query: 281 gccaacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggag 340 | ||||||| |||||| |||||||| || ||||| ||||||||||| ||||||||| Sbjct: 202 gacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgtacctgtgcccggag 261 Query: 341 ccgtacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttc 400 |||||||||||| |||||| ||| || || ||||||| |||||||| ||||||||| Sbjct: 262 ccgtacccggaggagaacacgcggtttctggagcagaacggcatcaagcttcaccagttc 321 Query: 401 ggaatcgagggccgcaaggagccattcgtcgagatacccgatgagaaaatccgggaggca 460 || || || ||| ||||||||| | || | || || || || |||||||| || ||| Sbjct: 322 ggtattgacggcagcaaggagctgcttgtaaacatccctgaagaaaaaatccgagaagca 381 Query: 461 cttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 || |||||| | || || ||||| |||||||| |||| || |||||||||||||||||| Sbjct: 382 ctcaaagttattcttgacgtaaggaatcaaccggtgctcatccactgcaagagaggcaag 441
>emb|CT828282.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN060G01, full insert sequence Length = 1105 Score = 121 bits (61), Expect = 6e-24 Identities = 271/341 (79%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgct 280 ||||||||||||||||||||||| || | ||| | ||||||||||||||||| | | Sbjct: 284 ccgccgctcaacttcgccatggtggatcatggcgtataccgctccggcttccccgacatc 343 Query: 281 gccaacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggag 340 ||||| | | ||| || ||||||| |||||||||| || ||| ||||||||||||| Sbjct: 344 tccaacctgccgttcgtcgagtcccttcgcctccgctccgtcctgtgcctctgcccggag 403 Query: 341 ccgtacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttc 400 |||||||||||| | ||| |||||||||| | ||||||||| ||| ||||||| Sbjct: 404 ccgtacccggaggcgaaccaggagttcctccgcgcccacgggatcaggctgttccagttc 463 Query: 401 ggaatcgagggccgcaaggagccattcgtcgagatacccgatgagaaaatccgggaggca 460 |||||||| || ||||||||| || || | ||||| || || | |||||| ||||| Sbjct: 464 ggaatcgacggttccaaggagccctttgtgaacatacctgaagatagaatccgtgaggct 523 Query: 461 cttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 || |||||||| |||||||| |||||| || ||||||||||||||||| | || ||| Sbjct: 524 ctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactgcaagcgtggaaag 583 Query: 521 caccgaactggatgcgtcgttggttgcatgaggaagttgca 561 || |||||||| || || ||||||||| ||||||| ||||| Sbjct: 584 catcgaactggctgtgtggttggttgcttgaggaaattgca 624
>ref|NM_001069175.1| Oryza sativa (japonica cultivar-group) Os09g0135700 (Os09g0135700) mRNA, complete cds Length = 1365 Score = 121 bits (61), Expect = 6e-24 Identities = 271/341 (79%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgct 280 ||||||||||||||||||||||| || | ||| | ||||||||||||||||| | | Sbjct: 387 ccgccgctcaacttcgccatggtggatcatggcgtataccgctccggcttccccgacatc 446 Query: 281 gccaacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggag 340 ||||| | | ||| || ||||||| |||||||||| || ||| ||||||||||||| Sbjct: 447 tccaacctgccgttcgtcgagtcccttcgcctccgctccgtcctgtgcctctgcccggag 506 Query: 341 ccgtacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttc 400 |||||||||||| | ||| |||||||||| | ||||||||| ||| ||||||| Sbjct: 507 ccgtacccggaggcgaaccaggagttcctccgcgcccacgggatcaggctgttccagttc 566 Query: 401 ggaatcgagggccgcaaggagccattcgtcgagatacccgatgagaaaatccgggaggca 460 |||||||| || ||||||||| || || | ||||| || || | |||||| ||||| Sbjct: 567 ggaatcgacggttccaaggagccctttgtgaacatacctgaagatagaatccgtgaggct 626 Query: 461 cttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 || |||||||| |||||||| |||||| || ||||||||||||||||| | || ||| Sbjct: 627 ctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactgcaagcgtggaaag 686 Query: 521 caccgaactggatgcgtcgttggttgcatgaggaagttgca 561 || |||||||| || || ||||||||| ||||||| ||||| Sbjct: 687 catcgaactggctgtgtggttggttgcttgaggaaattgca 727
>dbj|AK121831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099M08, full insert sequence Length = 1365 Score = 121 bits (61), Expect = 6e-24 Identities = 271/341 (79%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgct 280 ||||||||||||||||||||||| || | ||| | ||||||||||||||||| | | Sbjct: 388 ccgccgctcaacttcgccatggtggatcatggcgtataccgctccggcttccccgacatc 447 Query: 281 gccaacttccgcttcctcaagtccctcaacctccgctccatcgtgtacctctgcccggag 340 ||||| | | ||| || ||||||| |||||||||| || ||| ||||||||||||| Sbjct: 448 tccaacctgccgttcgtcgagtcccttcgcctccgctccgtcctgtgcctctgcccggag 507 Query: 341 ccgtacccggagaccaacacggagttcctcgacaagaacgggatcaagctccaccagttc 400 |||||||||||| | ||| |||||||||| | ||||||||| ||| ||||||| Sbjct: 508 ccgtacccggaggcgaaccaggagttcctccgcgcccacgggatcaggctgttccagttc 567 Query: 401 ggaatcgagggccgcaaggagccattcgtcgagatacccgatgagaaaatccgggaggca 460 |||||||| || ||||||||| || || | ||||| || || | |||||| ||||| Sbjct: 568 ggaatcgacggttccaaggagccctttgtgaacatacctgaagatagaatccgtgaggct 627 Query: 461 cttaaagttgtcctagatgtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 || |||||||| |||||||| |||||| || ||||||||||||||||| | || ||| Sbjct: 628 ctaaaagttgtgctagatgtggcaaatcacccggtgcttattcactgcaagcgtggaaag 687 Query: 521 caccgaactggatgcgtcgttggttgcatgaggaagttgca 561 || |||||||| || || ||||||||| ||||||| ||||| Sbjct: 688 catcgaactggctgtgtggttggttgcttgaggaaattgca 728
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 91.7 bits (46), Expect = 5e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 519 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 578 ||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||| | | Sbjct: 32557030 agcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaactt 32556971 Query: 579 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 638 | || || ||||||||||||| || || || ||||| | ||| || || || | ||||| Sbjct: 32556970 cagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagat 32556911 Query: 639 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaacc 696 ||||||||||||| ||| | ||||||| ||||||||| ||||||| |||||||| Sbjct: 32556910 tcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaacc 32556853 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 325 gtacctctgcccggagccgtacccggagaccaacacggagttcctcgacaagaacgggat 384 |||||| ||||||||||||||||||||| |||||| ||| || || ||||||| || Sbjct: 32560222 gtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcat 32560163 Query: 385 caagctccaccagttcggaatcgagggccgcaagg 419 |||||| ||||||||||| || || ||| |||||| Sbjct: 32560162 caagcttcaccagttcggtattgacggcagcaagg 32560128 Score = 60.0 bits (30), Expect = 2e-05 Identities = 87/106 (82%) Strand = Plus / Minus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgct 280 |||||||| ||||||||| ||| |||||||||||| ||||||||| ||||| ||||| Sbjct: 32560438 ccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgcc 32560379 Query: 281 gccaacttccgcttcctcaagtccctcaacctccgctccatcgtgt 326 | ||||||| |||||| |||||||| || ||||| ||||||| Sbjct: 32560378 gacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgt 32560333 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Minus Query: 479 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 ||||| |||||||| |||| || |||||||||||||||||| Sbjct: 32557173 gtaaggaatcaaccggtgctcatccactgcaagagaggcaag 32557132
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 91.7 bits (46), Expect = 5e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 519 agcaccgaactggatgcgtcgttggttgcatgaggaagttgcagaaatggtgcctgtcat 578 ||||||| ||||| ||||||||||| ||| |||| |||||||||||||||||||| | | Sbjct: 54003 agcaccggactggctgcgtcgttgggtgcctgagaaagttgcagaaatggtgcctaactt 53944 Query: 579 cggtctttgacgagtaccagcgcttcgctgctgcgaaagtgaggagcaccgacctgagat 638 | || || ||||||||||||| || || || ||||| | ||| || || || | ||||| Sbjct: 53943 cagttttcgacgagtaccagcattttgcagcggcgaaggcgagaagtactgatcagagat 53884 Query: 639 tcatggagctgttcgacgtcgcgagcttgaagcacctgaccacctcacattgttaacc 696 ||||||||||||| ||| | ||||||| ||||||||| ||||||| |||||||| Sbjct: 53883 tcatggagctgtttgacacatccagcttgatgcacctgacggcctcacagtgttaacc 53826 Score = 61.9 bits (31), Expect = 4e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 325 gtacctctgcccggagccgtacccggagaccaacacggagttcctcgacaagaacgggat 384 |||||| ||||||||||||||||||||| |||||| ||| || || ||||||| || Sbjct: 57195 gtacctgtgcccggagccgtacccggaggagaacacgcggtttctggagcagaacggcat 57136 Query: 385 caagctccaccagttcggaatcgagggccgcaagg 419 |||||| ||||||||||| || || ||| |||||| Sbjct: 57135 caagcttcaccagttcggtattgacggcagcaagg 57101 Score = 60.0 bits (30), Expect = 2e-05 Identities = 87/106 (82%) Strand = Plus / Minus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttcccggccgct 280 |||||||| ||||||||| ||| |||||||||||| ||||||||| ||||| ||||| Sbjct: 57411 ccgccgcttaacttcgccgaggtgaacgacggcatcttccgctccgggttccccgccgcc 57352 Query: 281 gccaacttccgcttcctcaagtccctcaacctccgctccatcgtgt 326 | ||||||| |||||| |||||||| || ||||| ||||||| Sbjct: 57351 gacaacttcgcgttcctcctctccctcaagctacgctcgatcgtgt 57306 Score = 44.1 bits (22), Expect = 1.0 Identities = 37/42 (88%) Strand = Plus / Minus Query: 479 gtaagaaatcaacctctgcttattcactgcaagagaggcaag 520 ||||| |||||||| |||| || |||||||||||||||||| Sbjct: 54146 gtaaggaatcaaccggtgctcatccactgcaagagaggcaag 54105
>gb|AY789640.1| Capsicum annuum tyrosine specific protein phosphatase family protein mRNA, complete cds Length = 1319 Score = 75.8 bits (38), Expect = 3e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 500 attcactgcaagagaggcaagcaccgaactggatgcgtcgttggttgcatgaggaagttg 559 ||||||||||| | || |||||||||||||| ||| | ||||| ||| |||| || ||| Sbjct: 557 attcactgcaaacgcgggaagcaccgaactgggtgccttgttggatgcttgagaaaattg 616 Query: 560 cagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 617 ||||| |||||||| |||| || |||||||||||||| || || |||||||| |||| Sbjct: 617 cagaagtggtgcctaacatctgtgtttgacgagtaccaacgttttgctgctgccaaag 674
>dbj|AP008240.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39G20, TM0353a, complete sequence Length = 78736 Score = 63.9 bits (32), Expect = 1e-06 Identities = 38/40 (95%) Strand = Plus / Minus Query: 216 tcgtcccgccgctcaacttcgccatggtcgacgacggcat 255 |||| ||||||||||||||||||||||||||| ||||||| Sbjct: 11031 tcgtgccgccgctcaacttcgccatggtcgacaacggcat 10992
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttccc 273 ||||||||||||||||||||||| || | ||| | ||||||||||||||||| Sbjct: 2644417 ccgccgctcaacttcgccatggtggatcatggcgtataccgctccggcttccc 2644469 Score = 54.0 bits (27), Expect = 0.001 Identities = 39/43 (90%) Strand = Plus / Plus Query: 328 cctctgcccggagccgtacccggagaccaacacggagttcctc 370 ||||||||||||||||||||||||| | ||| |||||||||| Sbjct: 2644606 cctctgcccggagccgtacccggaggcgaaccaggagttcctc 2644648
>dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0006E02 Length = 141782 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcgacgacggcatctaccgctccggcttccc 273 ||||||||||||||||||||||| || | ||| | ||||||||||||||||| Sbjct: 89695 ccgccgctcaacttcgccatggtggatcatggcgtataccgctccggcttccc 89747 Score = 54.0 bits (27), Expect = 0.001 Identities = 39/43 (90%) Strand = Plus / Plus Query: 328 cctctgcccggagccgtacccggagaccaacacggagttcctc 370 ||||||||||||||||||||||||| | ||| |||||||||| Sbjct: 89884 cctctgcccggagccgtacccggaggcgaaccaggagttcctc 89926
>gb|AF366443.1|AF366443 Allium cepa clone AGF096 maintainer line sequence Length = 858 Score = 56.0 bits (28), Expect = 3e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 566 tggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 617 |||||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct: 375 tggtgcctttcttcggtttttgacgagtaccatcgctttgctgctgccaaag 324
>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE Length = 120299 Score = 56.0 bits (28), Expect = 3e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 558 tgcagaaatggtgcctgtcatcggtctttgacgagtaccagcgcttcgctgctgcgaaag 617 |||| ||||||||| |||| || || |||||||||||||||||||| || || ||||||| Sbjct: 86964 tgcaaaaatggtgcttgtcgtctgtttttgacgagtaccagcgctttgcagcagcgaaag 87023
>gb|AY103919.1| Zea mays PCO099246 mRNA sequence Length = 1461 Score = 52.0 bits (26), Expect = 0.004 Identities = 50/58 (86%) Strand = Plus / Minus Query: 619 gaggagcaccgacctgagattcatggagctgttcgacgtcgcgagcttgaagcacctg 676 ||||||||| |||| ||| ||||||||||||||||| | ||||||||| ||||||| Sbjct: 147 gaggagcactgaccagaggttcatggagctgttcgatgcttcgagcttgacgcacctg 90
>dbj|AK228069.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-56-C10 Length = 1114 Score = 46.1 bits (23), Expect = 0.26 Identities = 50/59 (84%) Strand = Plus / Plus Query: 539 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 597 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 548 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 606 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcga 246 ||||||||||||||| |||||||||| Sbjct: 230 ccgccgctcaacttctccatggtcga 255
>ref|NM_100379.2| Arabidopsis thaliana phosphoprotein phosphatase (AT1G05000) mRNA, complete cds Length = 1104 Score = 46.1 bits (23), Expect = 0.26 Identities = 50/59 (84%) Strand = Plus / Plus Query: 539 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 597 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 548 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 606 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcga 246 ||||||||||||||| |||||||||| Sbjct: 230 ccgccgctcaacttctccatggtcga 255
>gb|AC005322.2|T7A14 Arabidopsis thaliana chromosome 1 BAC T7A14 sequence, complete sequence Length = 54157 Score = 46.1 bits (23), Expect = 0.26 Identities = 50/59 (84%) Strand = Plus / Minus Query: 539 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 597 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 48326 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 48268 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 ccgccgctcaacttcgccatggtcga 246 ||||||||||||||| |||||||||| Sbjct: 50730 ccgccgctcaacttctccatggtcga 50705
>gb|BT005210.1| Arabidopsis thaliana At1g05000 mRNA, complete cds Length = 648 Score = 46.1 bits (23), Expect = 0.26 Identities = 50/59 (84%) Strand = Plus / Plus Query: 539 gttggttgcatgaggaagttgcagaaatggtgcctgtcatcggtctttgacgagtacca 597 ||||||||| |||||||| | ||||||||||| || ||||| | || ||||||||||| Sbjct: 481 gttggttgcttgaggaagctccagaaatggtgtttgacatcgatattcgacgagtacca 539 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 221 ccgccgctcaacttcgccatggtcga 246 ||||||||||||||| |||||||||| Sbjct: 163 ccgccgctcaacttctccatggtcga 188
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 585 ttgacgagtaccagcgcttcgc 606 |||||||||||||||||||||| Sbjct: 1849978 ttgacgagtaccagcgcttcgc 1849999
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 ggtcgacgacggcatctaccgc 262 |||||||||||||||||||||| Sbjct: 2022819 ggtcgacgacggcatctaccgc 2022840
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 cccatgcccccgccgctgctgg 185 |||||||||||||||||||||| Sbjct: 667814 cccatgcccccgccgctgctgg 667835
>ref|NM_001050973.1| Oryza sativa (japonica cultivar-group) Os01g0780600 (Os01g0780600) mRNA, complete cds Length = 2306 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 gtcgacgacggcatctaccgc 262 ||||||||||||||||||||| Sbjct: 1551 gtcgacgacggcatctaccgc 1571
>ref|XM_001212463.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_03285) mRNA, complete cds Length = 1593 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 ggagatgagcggcctggagctgtgg 136 ||||||||||||||||| ||||||| Sbjct: 510 ggagatgagcggcctggggctgtgg 534
>ref|XM_001208840.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_01475) mRNA, complete cds Length = 858 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 ggagttcctcgacaagaacgg 381 ||||||||||||||||||||| Sbjct: 819 ggagttcctcgacaagaacgg 839
>emb|CR847880.11| Zebrafish DNA sequence from clone DKEY-165L13 in linkage group 12, complete sequence Length = 158507 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1033 ttctttgcatgaatgcatctaaatt 1057 |||||||||||||||||| |||||| Sbjct: 16258 ttctttgcatgaatgcatttaaatt 16282
>ref|XM_001076585.1| PREDICTED: Rattus norvegicus adenomatosis polyposis coli 2 (predicted) (Apc2_predicted), mRNA Length = 7343 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 caagcagagggccctggaggc 90 ||||||||||||||||||||| Sbjct: 2421 caagcagagggccctggaggc 2441
>ref|XM_234910.4| PREDICTED: Rattus norvegicus adenomatosis polyposis coli 2 (predicted) (Apc2_predicted), mRNA Length = 7343 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 caagcagagggccctggaggc 90 ||||||||||||||||||||| Sbjct: 2421 caagcagagggccctggaggc 2441
>emb|CR392038.8| Zebrafish DNA sequence from clone DKEY-172J4 in linkage group 7, complete sequence Length = 73718 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 catgaagctggaaatcatgcccaag 73 |||||||||| |||||||||||||| Sbjct: 9308 catgaagctgaaaatcatgcccaag 9284
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 160 cttccccatgcccccgccgctgctggcgg 188 |||||||||||| ||| |||||||||||| Sbjct: 6903552 cttccccatgccgccgtcgctgctggcgg 6903524
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 aggccatggagatgagcggcctgga 129 ||||||||||||||| ||||||||| Sbjct: 1325843 aggccatggagatgatcggcctgga 1325819
>gb|BT017942.1| Zea mays clone EL01N0521C02.c mRNA sequence Length = 243 Score = 42.1 bits (21), Expect = 4.1 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 970 ccattgttttcgggtactgaagctctgtactcgagcagcattgct 1014 |||||||||| |||||||||||| ||||||||||||| ||||| Sbjct: 134 ccattgtttttgggtactgaagc-aggtactcgagcagctttgct 177
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 gtcgacgacggcatctaccgc 262 ||||||||||||||||||||| Sbjct: 33058839 gtcgacgacggcatctaccgc 33058819
>ref|XM_688407.1| PREDICTED: Danio rerio similar to diacylglycerol kinase, delta 130kDa isoform 1 (LOC565110), partial mRNA Length = 1330 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaag 73 |||||||||| |||||||||||||| Sbjct: 513 catgaagctgaaaatcatgcccaag 537
>ref|XM_688420.1| PREDICTED: Danio rerio similar to diacylglycerol kinase, delta 130kDa isoform 1 (LOC565122), partial mRNA Length = 3097 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 catgaagctggaaatcatgcccaag 73 |||||||||| |||||||||||||| Sbjct: 3018 catgaagctgaaaatcatgcccaag 3042
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 gtcgacgacggcatctaccgc 262 ||||||||||||||||||||| Sbjct: 125067 gtcgacgacggcatctaccgc 125047
>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166966 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 550 gaggaagttgcagaaatggtgcctg 574 ||||||||||||||||||| ||||| Sbjct: 10634 gaggaagttgcagaaatggggcctg 10610
>dbj|AK120823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019D06, full insert sequence Length = 2307 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 gtcgacgacggcatctaccgc 262 ||||||||||||||||||||| Sbjct: 1552 gtcgacgacggcatctaccgc 1572
>gb|AC106731.3| Homo sapiens chromosome 5 clone CTD-2216D16, complete sequence Length = 132722 Score = 42.1 bits (21), Expect = 4.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 86 gaggcggggcagcgggaggaggccatgga 114 |||||||||||| |||||| ||||||||| Sbjct: 80679 gaggcggggcagagggaggtggccatgga 80707
>emb|AJ414553.1|BPR414553 Beta procumbens repeat element AluI family pAp22, clone pAp22 Length = 582 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 842 gcaaaacagaagattgaagaa 862 ||||||||||||||||||||| Sbjct: 266 gcaaaacagaagattgaagaa 286
>emb|AJ438178.1|BPR438178 Beta procumbens retrotransposon Athila-like Ty3-gypsy Length = 2110 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 842 gcaaaacagaagattgaagaa 862 ||||||||||||||||||||| Sbjct: 266 gcaaaacagaagattgaagaa 286 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 178,260,673 Number of extensions: 9701081 Number of successful extensions: 203381 Number of sequences better than 10.0: 46 Number of HSP's gapped: 203360 Number of HSP's successfully gapped: 94 Length of query: 1089 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1066 Effective length of database: 18,503,978,556 Effective search space: 19725241140696 Effective search space used: 19725241140696 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
