ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf138d02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049220.1| Oryza sativa (japonica cultivar-group) Os01g0267400 (Os01g0267400) mRNA, complete cds Length = 456 Score = 400 bits (202), Expect = e-108 Identities = 348/396 (87%), Gaps = 3/396 (0%) Strand = Plus / Plus Query: 252 ggaaaaggaagctatgttccgccgcagtatgttccgttatatggtgtagatactgaggag 311 |||||||| ||||| |||||||| ||||| |||| |||||||| | |||||||||||| Sbjct: 7 ggaaaagggagctacgttccgcctcagtacattccattatatggcctggatactgaggag 66 Query: 312 gatagcgttcctgaggtggaggagaacattgccacgcgccaaagattaagcagggatcct 371 ||| ||||| ||| || ||||||| |||| ||||||| | |||| | |||||||| Sbjct: 67 gatcgcgtttctgcgg---aggagaatgatgccgcgcgccacaagttaacccgggatcct 123 Query: 372 acacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgttgtattgat 431 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 124 acacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgttttattggt 183 Query: 432 gcgacttgcccctgctttctttttggaaaaaatgcacagttcttgggatctggaactctc 491 || ||||| || ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 184 gcaacttgtccttgcttcctttttggaaggaatgcacagttcttgggatctggaactctt 243 Query: 492 gctggatcatgcaccacccattgcatgctttggggccttctgacaagtttctgctgtctg 551 |||||||||||||| || ||||||||||||||||||||||| |||||| |||||||| || Sbjct: 244 gctggatcatgcactacacattgcatgctttggggccttctcacaagtctctgctgtgtg 303 Query: 552 tgtactggggggcttgtattagcagttccagggtctgctgttgcttgttatgcttgtgga 611 | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 304 tttactgggggccttgtattggcagttccaggatctgctgttgcttgttatgcttgtgga 363 Query: 612 taccgccaagcactaagaacgaagtacaaccttccg 647 || || |||||||||||| | || ||||| |||||| Sbjct: 364 tatcgacaagcactaagagcaaaatacaatcttccg 399
>dbj|AK242388.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J080051F22, full insert sequence Length = 1121 Score = 363 bits (183), Expect = 8e-97 Identities = 282/315 (89%) Strand = Plus / Plus Query: 425 tattgatgcgacttgcccctgctttctttttggaaaaaatgcacagttcttgggatctgg 484 ||||| ||| ||||| || ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 454 tattggtgcaacttgtccttgcttcctttttggaaggaatgcacagttcttgggatctgg 513 Query: 485 aactctcgctggatcatgcaccacccattgcatgctttggggccttctgacaagtttctg 544 |||||| |||||||||||||| || ||||||||||||||||||||||| |||||| |||| Sbjct: 514 aactcttgctggatcatgcactacacattgcatgctttggggccttctcacaagtctctg 573 Query: 545 ctgtctgtgtactggggggcttgtattagcagttccagggtctgctgttgcttgttatgc 604 |||| ||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 574 ctgtgtgtttactgggggccttgtattggcagttccaggatctgctgttgcttgttatgc 633 Query: 605 ttgtggataccgccaagcactaagaacgaagtacaaccttccggaagcaccatgcggcga 664 ||||||||| || |||||||||||| | || ||||| ||||||||||||||||| ||||| Sbjct: 634 ttgtggatatcgacaagcactaagagcaaaatacaatcttccggaagcaccatgtggcga 693 Query: 665 tttgacgacgcacttattttgccatctgtgtgcgatatgccaagagtacagggagatccg 724 ||| || ||||||||||| || || |||||||| ||||| |||||||||||||||||||| Sbjct: 694 tttaacaacgcacttattctgtcacctgtgtgctatatgtcaagagtacagggagatccg 753 Query: 725 cgagagatcagacag 739 |||||| ||||||| Sbjct: 754 cgagaggacagacag 768 Score = 147 bits (74), Expect = 9e-32 Identities = 154/180 (85%), Gaps = 3/180 (1%) Strand = Plus / Plus Query: 243 gagatggttggaaaaggaagctatgttccgccgcagtatgttccgttatatggtgtagat 302 ||||||| |||||||| ||||| |||||||| ||||| |||| |||||||| | ||| Sbjct: 223 gagatggccggaaaagggagctacgttccgcctcagtacattccattatatggcctggat 282 Query: 303 actgaggaggatagcgttcctgaggtggaggagaacattgccacgcgccaaagattaagc 362 |||||||||||| ||||| ||| || ||||||| |||| ||||||| | |||| | Sbjct: 283 actgaggaggatcgcgtttctgcgg---aggagaatgatgccgcgcgccacaagttaacc 339 Query: 363 agggatcctacacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgt 422 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 cgggatcctacacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgt 399
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 262 bits (132), Expect = 2e-66 Identities = 201/224 (89%) Strand = Plus / Minus Query: 425 tattgatgcgacttgcccctgctttctttttggaaaaaatgcacagttcttgggatctgg 484 ||||| ||| ||||| || ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 9173638 tattggtgcaacttgtccttgcttcctttttggaaggaatgcacagttcttgggatctgg 9173579 Query: 485 aactctcgctggatcatgcaccacccattgcatgctttggggccttctgacaagtttctg 544 |||||| |||||||||||||| || ||||||||||||||||||||||| |||||| |||| Sbjct: 9173578 aactcttgctggatcatgcactacacattgcatgctttggggccttctcacaagtctctg 9173519 Query: 545 ctgtctgtgtactggggggcttgtattagcagttccagggtctgctgttgcttgttatgc 604 |||| ||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 9173518 ctgtgtgtttactgggggccttgtattggcagttccaggatctgctgttgcttgttatgc 9173459 Query: 605 ttgtggataccgccaagcactaagaacgaagtacaaccttccgg 648 ||||||||| || |||||||||||| | || ||||| ||||||| Sbjct: 9173458 ttgtggatatcgacaagcactaagagcaaaatacaatcttccgg 9173415 Score = 147 bits (74), Expect = 9e-32 Identities = 154/180 (85%), Gaps = 3/180 (1%) Strand = Plus / Minus Query: 243 gagatggttggaaaaggaagctatgttccgccgcagtatgttccgttatatggtgtagat 302 ||||||| |||||||| ||||| |||||||| ||||| |||| |||||||| | ||| Sbjct: 9174313 gagatggccggaaaagggagctacgttccgcctcagtacattccattatatggcctggat 9174254 Query: 303 actgaggaggatagcgttcctgaggtggaggagaacattgccacgcgccaaagattaagc 362 |||||||||||| ||||| ||| || ||||||| |||| ||||||| | |||| | Sbjct: 9174253 actgaggaggatcgcgtttctgcgg---aggagaatgatgccgcgcgccacaagttaacc 9174197 Query: 363 agggatcctacacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgt 422 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9174196 cgggatcctacacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgt 9174137 Score = 105 bits (53), Expect = 3e-19 Identities = 83/93 (89%) Strand = Plus / Minus Query: 647 ggaagcaccatgcggcgatttgacgacgcacttattttgccatctgtgtgcgatatgcca 706 |||||||||||| |||||||| || ||||||||||| || || |||||||| ||||| || Sbjct: 9172679 ggaagcaccatgtggcgatttaacaacgcacttattctgtcacctgtgtgctatatgtca 9172620 Query: 707 agagtacagggagatccgcgagagatcagacag 739 |||||||||||||||||||||||| ||||||| Sbjct: 9172619 agagtacagggagatccgcgagaggacagacag 9172587
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 262 bits (132), Expect = 2e-66 Identities = 201/224 (89%) Strand = Plus / Minus Query: 425 tattgatgcgacttgcccctgctttctttttggaaaaaatgcacagttcttgggatctgg 484 ||||| ||| ||||| || ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 74020 tattggtgcaacttgtccttgcttcctttttggaaggaatgcacagttcttgggatctgg 73961 Query: 485 aactctcgctggatcatgcaccacccattgcatgctttggggccttctgacaagtttctg 544 |||||| |||||||||||||| || ||||||||||||||||||||||| |||||| |||| Sbjct: 73960 aactcttgctggatcatgcactacacattgcatgctttggggccttctcacaagtctctg 73901 Query: 545 ctgtctgtgtactggggggcttgtattagcagttccagggtctgctgttgcttgttatgc 604 |||| ||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 73900 ctgtgtgtttactgggggccttgtattggcagttccaggatctgctgttgcttgttatgc 73841 Query: 605 ttgtggataccgccaagcactaagaacgaagtacaaccttccgg 648 ||||||||| || |||||||||||| | || ||||| ||||||| Sbjct: 73840 ttgtggatatcgacaagcactaagagcaaaatacaatcttccgg 73797 Score = 147 bits (74), Expect = 9e-32 Identities = 154/180 (85%), Gaps = 3/180 (1%) Strand = Plus / Minus Query: 243 gagatggttggaaaaggaagctatgttccgccgcagtatgttccgttatatggtgtagat 302 ||||||| |||||||| ||||| |||||||| ||||| |||| |||||||| | ||| Sbjct: 74695 gagatggccggaaaagggagctacgttccgcctcagtacattccattatatggcctggat 74636 Query: 303 actgaggaggatagcgttcctgaggtggaggagaacattgccacgcgccaaagattaagc 362 |||||||||||| ||||| ||| || ||||||| |||| ||||||| | |||| | Sbjct: 74635 actgaggaggatcgcgtttctgcgg---aggagaatgatgccgcgcgccacaagttaacc 74579 Query: 363 agggatcctacacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgt 422 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74578 cgggatcctacacaatggtcttcaggcatctgtgcttgttttgatgatccacagagctgt 74519 Score = 105 bits (53), Expect = 3e-19 Identities = 83/93 (89%) Strand = Plus / Minus Query: 647 ggaagcaccatgcggcgatttgacgacgcacttattttgccatctgtgtgcgatatgcca 706 |||||||||||| |||||||| || ||||||||||| || || |||||||| ||||| || Sbjct: 73061 ggaagcaccatgtggcgatttaacaacgcacttattctgtcacctgtgtgctatatgtca 73002 Query: 707 agagtacagggagatccgcgagagatcagacag 739 |||||||||||||||||||||||| ||||||| Sbjct: 73001 agagtacagggagatccgcgagaggacagacag 72969
>ref|NM_001049219.1| Oryza sativa (japonica cultivar-group) Os01g0267300 (Os01g0267300) mRNA, complete cds Length = 1701 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Minus Query: 705 caagagtacagggagatccgcgagagatcagacag 739 |||||||||||||||||||||||||| ||||||| Sbjct: 1700 caagagtacagggagatccgcgagaggacagacag 1666
>emb|CR381579.22| Zebrafish DNA sequence from clone CH211-229N1 in linkage group 15, complete sequence Length = 130841 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Minus Query: 390 atctgtgcttgttttgatgatccacag 416 |||||||||||||||||||||| |||| Sbjct: 42920 atctgtgcttgttttgatgatcaacag 42894
>emb|BX255890.6| Zebrafish DNA sequence from clone CH211-236L15, complete sequence Length = 175490 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 ctttggggccttctgacaagtt 540 |||||||||||||||||||||| Sbjct: 18847 ctttggggccttctgacaagtt 18868
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 gtgaggcgaggccgcggataa 196 ||||||||||||||||||||| Sbjct: 20788629 gtgaggcgaggccgcggataa 20788609
>ref|NM_002545.3| Homo sapiens opioid binding protein/cell adhesion molecule-like (OPCML), transcript variant 1, mRNA Length = 6300 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 tttctttttggaaaaaatgca 467 ||||||||||||||||||||| Sbjct: 5140 tttctttttggaaaaaatgca 5160
>ref|NM_001012393.1| Homo sapiens opioid binding protein/cell adhesion molecule-like (OPCML), transcript variant 2, mRNA Length = 6413 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 tttctttttggaaaaaatgca 467 ||||||||||||||||||||| Sbjct: 5253 tttctttttggaaaaaatgca 5273
>gb|AC121840.3| Mus musculus BAC clone RP24-79E2 from chromosome 3, complete sequence Length = 180558 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 991 agcatgtaacattttttcttc 1011 ||||||||||||||||||||| Sbjct: 153637 agcatgtaacattttttcttc 153617
>dbj|AK125185.1| Homo sapiens cDNA FLJ43195 fis, clone FEBRA2002456 Length = 2197 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 tttctttttggaaaaaatgca 467 ||||||||||||||||||||| Sbjct: 1898 tttctttttggaaaaaatgca 1918
>gb|AC022400.9| Homo sapiens chromosome 10 clone RP11-574K11, complete sequence Length = 183797 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 905 tgtcagattttatgcagctgg 925 ||||||||||||||||||||| Sbjct: 62429 tgtcagattttatgcagctgg 62409
>emb|BX537377.1|HSM805672 Homo sapiens mRNA; cDNA DKFZp686H1949 (from clone DKFZp686H1949); complete cds Length = 6380 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 tttctttttggaaaaaatgca 467 ||||||||||||||||||||| Sbjct: 5205 tttctttttggaaaaaatgca 5225
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 gtgaggcgaggccgcggataa 196 ||||||||||||||||||||| Sbjct: 61398 gtgaggcgaggccgcggataa 61378
>dbj|AP006704.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588c, complete sequence Length = 16978 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 378 tggtcttcaggcatctgtgcttgttttgatgat 410 |||||||| || |||||||||||||| |||||| Sbjct: 11229 tggtcttctggaatctgtgcttgtttcgatgat 11261
>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1, complete sequence Length = 180744 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 990 tagcatgtaacattttttctt 1010 ||||||||||||||||||||| Sbjct: 81529 tagcatgtaacattttttctt 81549
>dbj|AP000843.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684N3, complete sequence Length = 191204 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 447 tttctttttggaaaaaatgca 467 ||||||||||||||||||||| Sbjct: 75873 tttctttttggaaaaaatgca 75853
>gb|AF070577.1|AF070577 Homo sapiens clone 24461 mRNA sequence Length = 1540 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 tttctttttggaaaaaatgca 467 ||||||||||||||||||||| Sbjct: 363 tttctttttggaaaaaatgca 383 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 178,080,913 Number of extensions: 9170931 Number of successful extensions: 160020 Number of sequences better than 10.0: 19 Number of HSP's gapped: 160016 Number of HSP's successfully gapped: 24 Length of query: 1030 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1007 Effective length of database: 18,503,978,556 Effective search space: 18633506405892 Effective search space used: 18633506405892 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
