ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf135j23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001059899.1| Oryza sativa (japonica cultivar-group) Os04g... 434 e-118
2dbj|AK061581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 434 e-118
3ref|NM_001054059.1| Oryza sativa (japonica cultivar-group) Os02g... 268 4e-68
4emb|CR855230.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 248 3e-62
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 248 3e-62
6emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4,... 248 3e-62
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 168 2e-38
8dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic D... 168 2e-38
9dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic D... 168 2e-38
10emb|CR855194.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 64 1e-06
11ref|NM_001059274.1| Oryza sativa (japonica cultivar-group) Os04g... 64 1e-06
12emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 64 1e-06
13dbj|AK121151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-06
14dbj|AK110902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-06
15ref|NM_001057108.1| Oryza sativa (japonica cultivar-group) Os03g... 56 3e-04
16dbj|AK099721.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-04
17gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 54 0.001
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 0.001
19emb|AL354737.12| Human DNA sequence from clone RP11-569H20 on ch... 44 0.96
20dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 44 0.96
21gb|AC189668.2| Taeniopygia guttata BAC clone TGMCBa-17H12 from c... 42 3.8
22gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome 42 3.8
23gb|AY590469.1| Homo sapiens MCM3 minichromosome maintenance defi... 42 3.8
24dbj|AK054878.1| Homo sapiens cDNA FLJ30316 fis, clone BRACE2003540 42 3.8
25dbj|AK001370.1| Homo sapiens cDNA FLJ10508 fis, clone NT2RP2000603 42 3.8
26gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 42 3.8
27ref|NR_002776.1| Homo sapiens MCM3 minichromosome maintenance de... 42 3.8
28gb|AF426263.1| Homo sapiens MCM3APAS mRNA, partial sequence 42 3.8
29gb|AC022538.7| Homo sapiens chromosome 10 clone RP11-420L7, comp... 42 3.8
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
31gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 3.8
32emb|AL645844.18| Mouse DNA sequence from clone RP23-82B4 on chro... 42 3.8
33gb|M28508.1|INS493STY Insertion element IS493 from Streptomyces ... 42 3.8
34dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
35dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
36dbj|AK100008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.8
37gb|AF026538.1|AF026538 Hordeum vulgare ABA-responsive protein mR... 42 3.8
38dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 3.8
39gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 42 3.8
40emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chr... 42 3.8
41dbj|AP001469.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 42 3.8 
>ref|NM_001059899.1| Oryza sativa (japonica cultivar-group) Os04g0526800 (Os04g0526800)
           mRNA, complete cds
          Length = 1103
 Score =  434 bits (219), Expect = e-118
 Identities = 350/393 (89%), Gaps = 3/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 287 ggagttccggtgacctctgaggcgtacgggatagaggagaaggcgtcgtcggccagggac 346
           ||||| ||||||||| |  ||||||  || ||||||||| ||| ||||| ||||||||  
Sbjct: 160 ggagtcccggtgaccgccaaggcgtttggcatagaggaggaggtgtcgttggccaggg-- 217

                                                                       
Query: 347 ggccagtcgttcaggaagggcgacggcgaccaccttgccgtttctttgacgcatccgagc 406
            |||||||||||||||||| ||||||||| |||||||| || || ||| |||| || |||
Sbjct: 218 -gccagtcgttcaggaaggccgacggcgatcaccttgcggtctcgttgtcgcaccccagc 276

                                                                       
Query: 407 ctctacacgtctttcggctacaagcacagcagcaagggtcaggttgtccactgggtgagc 466
           |  || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 277 ccttatacgtctttcggctataagcacagcagcaagggtcaggttatccactgggtgagc 336

                                                                       
Query: 467 aagctgagcagaagggcgcaaggcttccgtgagcatgtgatcttgggtcccaagatatcg 526
           ||||||||||||||||| || |||||| | |||||||||| |||||| || ||| | |||
Sbjct: 337 aagctgagcagaagggcacagggcttcagggagcatgtgaccttggggccaaagctgtcg 396

                                                                       
Query: 527 gagaccgtgaaggggaagctgagcctgggggccaagatcctgtaggccggcgggatcgag 586
           ||||| ||||||||||||||||||||||| || || |||||| |||||||||||||||||
Sbjct: 397 gagacggtgaaggggaagctgagcctgggcgcgaaaatcctgcaggccggcgggatcgag 456

                                                                       
Query: 587 cgcgtgttccggaaggcgttcacggcggacaaaggcgagcggctggtgaaggcgctgcag 646
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 457 cgcgtgttccggaaggcgttctcggcggagaaaggcgagcggctggtgaaggcgctgcag 516

                                            
Query: 647 tgctacctctacaccaccggcgggcccatcgcc 679
           |||||||| ||||||||||||||||||||||||
Sbjct: 517 tgctacctgtacaccaccggcgggcccatcgcc 549
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>dbj|AK061581.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H09, full
           insert sequence
          Length = 1103

 Score =  434 bits (219), Expect = e-118
 Identities = 350/393 (89%), Gaps = 3/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 287 ggagttccggtgacctctgaggcgtacgggatagaggagaaggcgtcgtcggccagggac 346
           ||||| ||||||||| |  ||||||  || ||||||||| ||| ||||| ||||||||  
Sbjct: 160 ggagtcccggtgaccgccaaggcgtttggcatagaggaggaggtgtcgttggccaggg-- 217

                                                                       
Query: 347 ggccagtcgttcaggaagggcgacggcgaccaccttgccgtttctttgacgcatccgagc 406
            |||||||||||||||||| ||||||||| |||||||| || || ||| |||| || |||
Sbjct: 218 -gccagtcgttcaggaaggccgacggcgatcaccttgcggtctcgttgtcgcaccccagc 276

                                                                       
Query: 407 ctctacacgtctttcggctacaagcacagcagcaagggtcaggttgtccactgggtgagc 466
           |  || |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 277 ccttatacgtctttcggctataagcacagcagcaagggtcaggttatccactgggtgagc 336

                                                                       
Query: 467 aagctgagcagaagggcgcaaggcttccgtgagcatgtgatcttgggtcccaagatatcg 526
           ||||||||||||||||| || |||||| | |||||||||| |||||| || ||| | |||
Sbjct: 337 aagctgagcagaagggcacagggcttcagggagcatgtgaccttggggccaaagctgtcg 396

                                                                       
Query: 527 gagaccgtgaaggggaagctgagcctgggggccaagatcctgtaggccggcgggatcgag 586
           ||||| ||||||||||||||||||||||| || || |||||| |||||||||||||||||
Sbjct: 397 gagacggtgaaggggaagctgagcctgggcgcgaaaatcctgcaggccggcgggatcgag 456

                                                                       
Query: 587 cgcgtgttccggaaggcgttcacggcggacaaaggcgagcggctggtgaaggcgctgcag 646
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 457 cgcgtgttccggaaggcgttctcggcggagaaaggcgagcggctggtgaaggcgctgcag 516

                                            
Query: 647 tgctacctctacaccaccggcgggcccatcgcc 679
           |||||||| ||||||||||||||||||||||||
Sbjct: 517 tgctacctgtacaccaccggcgggcccatcgcc 549
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>ref|NM_001054059.1| Oryza sativa (japonica cultivar-group) Os02g0636600 (Os02g0636600)
           mRNA, complete cds
          Length = 690

 Score =  268 bits (135), Expect = 4e-68
 Identities = 273/319 (85%)
 Strand = Plus / Plus

                                                                       
Query: 361 gaagggcgacggcgaccaccttgccgtttctttgacgcatccgagcctctacacgtcttt 420
           ||||| ||||||||||| ||| ||||| || |||||||| |||||||  |||||||||||
Sbjct: 96  gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 155

                                                                       
Query: 421 cggctacaagcacagcagcaagggtcaggttgtccactgggtgagcaagctgagcagaag 480
           |||||||||||||||||| |||   |||||  |||||||||||| ||||||| ||||| |
Sbjct: 156 cggctacaagcacagcagtaagctccaggtgatccactgggtgaacaagctgggcagacg 215

                                                                       
Query: 481 ggcgcaaggcttccgtgagcatgtgatcttgggtcccaagatatcggagaccgtgaaggg 540
           ||| || || ||| | || ||||||| |||||| || ||| | |||||||| |||| |||
Sbjct: 216 ggctcagggtttcagggatcatgtgaccttggggccgaagctgtcggagacggtgagggg 275

                                                                       
Query: 541 gaagctgagcctgggggccaagatcctgtaggccggcgggatcgagcgcgtgttccggaa 600
           ||||||||||||||| || | ||||||| ||||||||||  | ||||||||||||||| |
Sbjct: 276 gaagctgagcctgggcgcgaggatcctgcaggccggcggcgtggagcgcgtgttccggca 335

                                                                       
Query: 601 ggcgttcacggcggacaaaggcgagcggctggtgaaggcgctgcagtgctacctctacac 660
           ||| ||| ||||||| || || ||||||||||||||||| || |||||||||||||||||
Sbjct: 336 ggccttctcggcggagaagggagagcggctggtgaaggccctccagtgctacctctacac 395

                              
Query: 661 caccggcgggcccatcgcc 679
           ||||||||| |||||||||
Sbjct: 396 caccggcggccccatcgcc 414
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>emb|CR855230.1| Oryza sativa genomic DNA, chromosome 4, BAC clone:
             OSIGBa0115K01-H0319F09, complete sequence
          Length = 189580

 Score =  248 bits (125), Expect = 3e-62
 Identities = 164/177 (92%)
 Strand = Plus / Minus

                                                                         
Query: 503   gtgatcttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggccaag 562
             |||| |||||| || ||| | |||||||| ||||||||||||||||||||||| || || 
Sbjct: 53381 gtgaccttggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaa 53322

                                                                         
Query: 563   atcctgtaggccggcgggatcgagcgcgtgttccggaaggcgttcacggcggacaaaggc 622
             |||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 53321 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgttctcggcggagaaaggc 53262

                                                                      
Query: 623   gagcggctggtgaaggcgctgcagtgctacctctacaccaccggcgggcccatcgcc 679
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 53261 gagcggctggtgaaggcgctgcagtgctacctgtacaccaccggcgggcccatcgcc 53205



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                         
Query: 435   gcagcaagggtcaggttgtccactgggtgagcaagctgagcagaagggcgcaaggcttcc 494
             ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| 
Sbjct: 53569 gcagcaagggtcaggttatccactgggtgagcaagctgagcagaagggcacagggcttca 53510

                      
Query: 495   gtgagcatg 503
             | |||||||
Sbjct: 53509 gggagcatg 53501



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 124/149 (83%), Gaps = 3/149 (2%)
 Strand = Plus / Minus

                                                                         
Query: 287   ggagttccggtgacctctgaggcgtacgggatagaggagaaggcgtcgtcggccagggac 346
             ||||| ||||||||| |  ||||||  || ||||||||| ||| ||||| ||||||||  
Sbjct: 53821 ggagtcccggtgaccgccaaggcgtttggcatagaggaggaggtgtcgttggccaggg-- 53764

                                                                         
Query: 347   ggccagtcgttcaggaagggcgacggcgaccaccttgccgtttctttgacgcatccgagc 406
              |||||||||||||||||| ||||||||| |||||||| || || ||| |||| || |||
Sbjct: 53763 -gccagtcgttcaggaaggccgacggcgatcaccttgcggtctcgttgtcgcaccccagc 53705

                                          
Query: 407   ctctacacgtctttcggctacaagcacag 435
             |  || |||||||||||||| ||||||||
Sbjct: 53704 ccttatacgtctttcggctataagcacag 53676
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score =  248 bits (125), Expect = 3e-62
 Identities = 164/177 (92%)
 Strand = Plus / Minus

                                                                            
Query: 503      gtgatcttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggccaag 562
                |||| |||||| || ||| | |||||||| ||||||||||||||||||||||| || || 
Sbjct: 26316621 gtgaccttggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaa 26316562

                                                                            
Query: 563      atcctgtaggccggcgggatcgagcgcgtgttccggaaggcgttcacggcggacaaaggc 622
                |||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 26316561 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgttctcggcggagaaaggc 26316502

                                                                         
Query: 623      gagcggctggtgaaggcgctgcagtgctacctctacaccaccggcgggcccatcgcc 679
                |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 26316501 gagcggctggtgaaggcgctgcagtgctacctgtacaccaccggcgggcccatcgcc 26316445



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                            
Query: 435      gcagcaagggtcaggttgtccactgggtgagcaagctgagcagaagggcgcaaggcttcc 494
                ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| 
Sbjct: 26316809 gcagcaagggtcaggttatccactgggtgagcaagctgagcagaagggcacagggcttca 26316750

                         
Query: 495      gtgagcatg 503
                | |||||||
Sbjct: 26316749 gggagcatg 26316741



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 124/149 (83%), Gaps = 3/149 (2%)
 Strand = Plus / Minus

                                                                            
Query: 287      ggagttccggtgacctctgaggcgtacgggatagaggagaaggcgtcgtcggccagggac 346
                ||||| ||||||||| |  ||||||  || ||||||||| ||| ||||| ||||||||  
Sbjct: 26317061 ggagtcccggtgaccgccaaggcgtttggcatagaggaggaggtgtcgttggccaggg-- 26317004

                                                                            
Query: 347      ggccagtcgttcaggaagggcgacggcgaccaccttgccgtttctttgacgcatccgagc 406
                 |||||||||||||||||| ||||||||| |||||||| || || ||| |||| || |||
Sbjct: 26317003 -gccagtcgttcaggaaggccgacggcgatcaccttgcggtctcgttgtcgcaccccagc 26316945

                                             
Query: 407      ctctacacgtctttcggctacaagcacag 435
                |  || |||||||||||||| ||||||||
Sbjct: 26316944 ccttatacgtctttcggctataagcacag 26316916



 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 191      cgctgggccacaccgacatggacgtgaagatctccgagac 230
                ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 20385321 cgctgggccacaccgacgtcgacgtgaagatctccgagac 20385360
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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
             complete sequence
          Length = 141545

 Score =  248 bits (125), Expect = 3e-62
 Identities = 164/177 (92%)
 Strand = Plus / Minus

                                                                         
Query: 503   gtgatcttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggccaag 562
             |||| |||||| || ||| | |||||||| ||||||||||||||||||||||| || || 
Sbjct: 93198 gtgaccttggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaa 93139

                                                                         
Query: 563   atcctgtaggccggcgggatcgagcgcgtgttccggaaggcgttcacggcggacaaaggc 622
             |||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 93138 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgttctcggcggagaaaggc 93079

                                                                      
Query: 623   gagcggctggtgaaggcgctgcagtgctacctctacaccaccggcgggcccatcgcc 679
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 93078 gagcggctggtgaaggcgctgcagtgctacctgtacaccaccggcgggcccatcgcc 93022



 Score = 97.6 bits (49), Expect = 7e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                         
Query: 435   gcagcaagggtcaggttgtccactgggtgagcaagctgagcagaagggcgcaaggcttcc 494
             ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| 
Sbjct: 93386 gcagcaagggtcaggttatccactgggtgagcaagctgagcagaagggcacagggcttca 93327

                      
Query: 495   gtgagcatg 503
             | |||||||
Sbjct: 93326 gggagcatg 93318



 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 124/149 (83%), Gaps = 3/149 (2%)
 Strand = Plus / Minus

                                                                         
Query: 287   ggagttccggtgacctctgaggcgtacgggatagaggagaaggcgtcgtcggccagggac 346
             ||||| ||||||||| |  ||||||  || ||||||||| ||| ||||| ||||||||  
Sbjct: 93638 ggagtcccggtgaccgccaaggcgtttggcatagaggaggaggtgtcgttggccaggg-- 93581

                                                                         
Query: 347   ggccagtcgttcaggaagggcgacggcgaccaccttgccgtttctttgacgcatccgagc 406
              |||||||||||||||||| ||||||||| |||||||| || || ||| |||| || |||
Sbjct: 93580 -gccagtcgttcaggaaggccgacggcgatcaccttgcggtctcgttgtcgcaccccagc 93522

                                          
Query: 407   ctctacacgtctttcggctacaagcacag 435
             |  || |||||||||||||| ||||||||
Sbjct: 93521 ccttatacgtctttcggctataagcacag 93493
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score =  168 bits (85), Expect = 2e-38
 Identities = 154/177 (87%)
 Strand = Plus / Minus

                                                                            
Query: 503      gtgatcttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggccaag 562
                |||| |||||| || ||| | |||||||| |||| |||||||||||||||||| || | |
Sbjct: 25542411 gtgaccttggggccgaagctgtcggagacggtgagggggaagctgagcctgggcgcgagg 25542352

                                                                            
Query: 563      atcctgtaggccggcgggatcgagcgcgtgttccggaaggcgttcacggcggacaaaggc 622
                |||||| ||||||||||  | ||||||||||||||| |||| ||| ||||||| || || 
Sbjct: 25542351 atcctgcaggccggcggcgtggagcgcgtgttccggcaggccttctcggcggagaaggga 25542292

                                                                         
Query: 623      gagcggctggtgaaggcgctgcagtgctacctctacaccaccggcgggcccatcgcc 679
                ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 25542291 gagcggctggtgaaggccctccagtgctacctctacaccaccggcggccccatcgcc 25542235



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                            
Query: 361      gaagggcgacggcgaccaccttgccgtttctttgacgcatccgagcctctacacgtcttt 420
                ||||| ||||||||||| ||| ||||| || |||||||| |||||||  |||||||||||
Sbjct: 25542778 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 25542719

                               
Query: 421      cggctacaagcacag 435
                |||||||||||||||
Sbjct: 25542718 cggctacaagcacag 25542704
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>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0014E22
          Length = 157627

 Score =  168 bits (85), Expect = 2e-38
 Identities = 154/177 (87%)
 Strand = Plus / Minus

                                                                         
Query: 503   gtgatcttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggccaag 562
             |||| |||||| || ||| | |||||||| |||| |||||||||||||||||| || | |
Sbjct: 12458 gtgaccttggggccgaagctgtcggagacggtgagggggaagctgagcctgggcgcgagg 12399

                                                                         
Query: 563   atcctgtaggccggcgggatcgagcgcgtgttccggaaggcgttcacggcggacaaaggc 622
             |||||| ||||||||||  | ||||||||||||||| |||| ||| ||||||| || || 
Sbjct: 12398 atcctgcaggccggcggcgtggagcgcgtgttccggcaggccttctcggcggagaaggga 12339

                                                                      
Query: 623   gagcggctggtgaaggcgctgcagtgctacctctacaccaccggcgggcccatcgcc 679
             ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 12338 gagcggctggtgaaggccctccagtgctacctctacaccaccggcggccccatcgcc 12282



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                         
Query: 361   gaagggcgacggcgaccaccttgccgtttctttgacgcatccgagcctctacacgtcttt 420
             ||||| ||||||||||| ||| ||||| || |||||||| |||||||  |||||||||||
Sbjct: 12825 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 12766

                            
Query: 421   cggctacaagcacag 435
             |||||||||||||||
Sbjct: 12765 cggctacaagcacag 12751
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>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1581_H09
          Length = 86699

 Score =  168 bits (85), Expect = 2e-38
 Identities = 154/177 (87%)
 Strand = Plus / Minus

                                                                         
Query: 503   gtgatcttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggccaag 562
             |||| |||||| || ||| | |||||||| |||| |||||||||||||||||| || | |
Sbjct: 33810 gtgaccttggggccgaagctgtcggagacggtgagggggaagctgagcctgggcgcgagg 33751

                                                                         
Query: 563   atcctgtaggccggcgggatcgagcgcgtgttccggaaggcgttcacggcggacaaaggc 622
             |||||| ||||||||||  | ||||||||||||||| |||| ||| ||||||| || || 
Sbjct: 33750 atcctgcaggccggcggcgtggagcgcgtgttccggcaggccttctcggcggagaaggga 33691

                                                                      
Query: 623   gagcggctggtgaaggcgctgcagtgctacctctacaccaccggcgggcccatcgcc 679
             ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 33690 gagcggctggtgaaggccctccagtgctacctctacaccaccggcggccccatcgcc 33634



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                         
Query: 361   gaagggcgacggcgaccaccttgccgtttctttgacgcatccgagcctctacacgtcttt 420
             ||||| ||||||||||| ||| ||||| || |||||||| |||||||  |||||||||||
Sbjct: 34177 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 34118

                            
Query: 421   cggctacaagcacag 435
             |||||||||||||||
Sbjct: 34117 cggctacaagcacag 34103
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>emb|CR855194.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0134P10,
            complete sequence
          Length = 78352

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 191  cgctgggccacaccgacatggacgtgaagatctccgagac 230
            ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 5686 cgctgggccacaccgacgtcgacgtgaagatctccgagac 5725
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>ref|NM_001059274.1| Oryza sativa (japonica cultivar-group) Os04g0412300 (Os04g0412300)
           mRNA, complete cds
          Length = 1981

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 191 cgctgggccacaccgacatggacgtgaagatctccgagac 230
           ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 942 cgctgggccacaccgacgtcgacgtgaagatctccgagac 981
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
              complete sequence
          Length = 143301

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 191    cgctgggccacaccgacatggacgtgaagatctccgagac 230
              ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 115954 cgctgggccacaccgacgtcgacgtgaagatctccgagac 115993
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>dbj|AK121151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078I08, full
           insert sequence
          Length = 1981

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 191 cgctgggccacaccgacatggacgtgaagatctccgagac 230
           ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 942 cgctgggccacaccgacgtcgacgtgaagatctccgagac 981
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>dbj|AK110902.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B03, full
            insert sequence
          Length = 1598

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                    
Query: 191  cgctgggccacaccgacatggacgtgaagatctccgagac 230
            ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1176 cgctgggccacaccgacgtcgacgtgaagatctccgagac 1215
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>ref|NM_001057108.1| Oryza sativa (japonica cultivar-group) Os03g0586900 (Os03g0586900)
           mRNA, complete cds
          Length = 2448

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 685 caacaagggcgacgtgcttccgcctcacaagt 716
           ||||||||||||||||||||| ||||||||||
Sbjct: 282 caacaagggcgacgtgcttccacctcacaagt 313
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>dbj|AK099721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088F16, full
           insert sequence
          Length = 2451

 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 685 caacaagggcgacgtgcttccgcctcacaagt 716
           ||||||||||||||||||||| ||||||||||
Sbjct: 285 caacaagggcgacgtgcttccacctcacaagt 316
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 685    caacaagggcgacgtgcttccgcctcacaag 715
              ||||||||||||||||||||| |||||||||
Sbjct: 175007 caacaagggcgacgtgcttccacctcacaag 175037
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 685      caacaagggcgacgtgcttccgcctcacaag 715
                ||||||||||||||||||||| |||||||||
Sbjct: 21475125 caacaagggcgacgtgcttccacctcacaag 21475155
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>emb|AL354737.12| Human DNA sequence from clone RP11-569H20 on chromosome X, complete
             sequence
          Length = 172991

 Score = 44.1 bits (22), Expect = 0.96
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 773   gccttcattttttaaaagtttg 794
             ||||||||||||||||||||||
Sbjct: 27261 gccttcattttttaaaagtttg 27240
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 44.1 bits (22), Expect = 0.96
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 894    attttttggttgaataccagat 915
              ||||||||||||||||||||||
Sbjct: 578363 attttttggttgaataccagat 578384
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>gb|AC189668.2| Taeniopygia guttata BAC clone TGMCBa-17H12 from chromosome unknown,
              complete sequence
          Length = 152181

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 953    ttattatgaaatattatgcattatt 977
              |||||||||||||||||| ||||||
Sbjct: 112453 ttattatgaaatattatgaattatt 112429
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>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome
          Length = 3225748

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 364     gggcgacggcgaccaccttgccgtt 388
               ||||||||||||| |||||||||||
Sbjct: 1768122 gggcgacggcgacgaccttgccgtt 1768146
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>gb|AY590469.1| Homo sapiens MCM3 minichromosome maintenance deficient 3 (S.
             cerevisiae) associated protein (MCM3AP) gene, complete cds
          Length = 54127

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 777   tcattttttaaaagtttggtgtaca 801
             ||||||||||||||||| |||||||
Sbjct: 36001 tcattttttaaaagttttgtgtaca 35977
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>dbj|AK054878.1| Homo sapiens cDNA FLJ30316 fis, clone BRACE2003540
          Length = 2719

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 777  tcattttttaaaagtttggtgtaca 801
            ||||||||||||||||| |||||||
Sbjct: 2263 tcattttttaaaagttttgtgtaca 2287
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>dbj|AK001370.1| Homo sapiens cDNA FLJ10508 fis, clone NT2RP2000603
          Length = 2543

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 777  tcattttttaaaagtttggtgtaca 801
            ||||||||||||||||| |||||||
Sbjct: 2078 tcattttttaaaagttttgtgtaca 2102
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    gtgagcaagctgagcagaagg 481
              |||||||||||||||||||||
Sbjct: 215884 gtgagcaagctgagcagaagg 215904
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>ref|NR_002776.1| Homo sapiens MCM3 minichromosome maintenance deficient 3 (S.
            cerevisiae) associated protein antisense (MCM3APAS) on
            chromosome 21
 gb|BC059792.1| Homo sapiens cDNA clone MGC:61921 IMAGE:6713090, complete cds
          Length = 2354

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 777  tcattttttaaaagtttggtgtaca 801
            ||||||||||||||||| |||||||
Sbjct: 1865 tcattttttaaaagttttgtgtaca 1889
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>gb|AF426263.1| Homo sapiens MCM3APAS mRNA, partial sequence
          Length = 2543

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 777  tcattttttaaaagtttggtgtaca 801
            ||||||||||||||||| |||||||
Sbjct: 2078 tcattttttaaaagttttgtgtaca 2102
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>gb|AC022538.7| Homo sapiens chromosome 10 clone RP11-420L7, complete sequence
          Length = 166014

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 943    ttggttgattttattatgaaa 963
              |||||||||||||||||||||
Sbjct: 112147 ttggttgattttattatgaaa 112167
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 895     ttttttggttgaataccagatttgt 919
               ||||||||| |||||||||||||||
Sbjct: 4190876 ttttttggtggaataccagatttgt 4190852
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 570     aggccggcgggatcgagcgcg 590
               |||||||||||||||||||||
Sbjct: 2801368 aggccggcgggatcgagcgcg 2801348
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>emb|AL645844.18| Mouse DNA sequence from clone RP23-82B4 on chromosome 11 Contains a
             heat shock protein Hsp90 family pseudogene, complete
             sequence
          Length = 146832

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 820   ataattctgaagaaaacccac 840
             |||||||||||||||||||||
Sbjct: 49161 ataattctgaagaaaacccac 49181
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>gb|M28508.1|INS493STY Insertion element IS493 from Streptomyces lividans
          Length = 1643

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 325 gaaggcgtcgtcggccaggga 345
           |||||||||||||||||||||
Sbjct: 502 gaaggcgtcgtcggccaggga 482
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>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1361_E02
          Length = 100168

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 895   ttttttggttgaataccagatttgt 919
             ||||||||| |||||||||||||||
Sbjct: 74498 ttttttggtggaataccagatttgt 74474
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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1014_E09
          Length = 184624

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 895   ttttttggttgaataccagatttgt 919
             ||||||||| |||||||||||||||
Sbjct: 11930 ttttttggtggaataccagatttgt 11906
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>dbj|AK100008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136M08, full
            insert sequence
          Length = 3590

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 895  ttttttggttgaataccagatttgt 919
            ||||||||| |||||||||||||||
Sbjct: 2523 ttttttggtggaataccagatttgt 2499
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>gb|AF026538.1|AF026538 Hordeum vulgare ABA-responsive protein mRNA, complete cds
          Length = 1326

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 538 ggggaagctgagcctgggggc 558
           |||||||||||||||||||||
Sbjct: 718 ggggaagctgagcctgggggc 738
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>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 777    tcattttttaaaagtttggtgtaca 801
              ||||||||||||||||| |||||||
Sbjct: 268967 tcattttttaaaagttttgtgtaca 268991
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    gtgagcaagctgagcagaagg 481
              |||||||||||||||||||||
Sbjct: 214592 gtgagcaagctgagcagaagg 214612
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>emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chromosome 4, complete
             sequence
          Length = 197911

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 932   tgtaatgtactttggttgatt 952
             |||||||||||||||||||||
Sbjct: 10632 tgtaatgtactttggttgatt 10612
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>dbj|AP001469.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:B178H12, telomere
             region, complete sequence
          Length = 47859

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 777   tcattttttaaaagtttggtgtaca 801
             ||||||||||||||||| |||||||
Sbjct: 29917 tcattttttaaaagttttgtgtaca 29941


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 164,391,471
Number of extensions: 9804194
Number of successful extensions: 220697
Number of sequences better than 10.0: 41
Number of HSP's gapped: 220697
Number of HSP's successfully gapped: 51
Length of query: 1001
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 978
Effective length of database: 18,503,978,556
Effective search space: 18096891027768
Effective search space used: 18096891027768
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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