ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf138c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os03g0160900:Os03g0160900 37 0.020
2AK071766:Os02g0678400 31 1.1
3AK110192: 30 3.1
4AK105602:Os08g0369200 29 4.1
5AY644643:Os07g0655800 29 5.4
6AK106233:Os10g0524000 29 5.4
7AK065315:Os02g0675700 28 7.0
8AK103713:Os04g0376500 28 9.2
9AK061349:Os04g0376500 28 9.2

>Os03g0160900:Os03g0160900 |
          Length = 454
 Score = 37.0 bits (84), Expect = 0.020
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 392 EEQRDFKHQLKTKGRVTYELEVDEDDPRFKDECTTSSAGAGRRRHRPGVMKKQD----GQ 559
           EE+    +Q  TKG   YE++ DED+          +A +GRRR R GV  K++    G 
Sbjct: 391 EEREGILNQYYTKGYAEYEVDDDEDEDEGNKGHARVAATSGRRRFRHGVALKKNQSGGGS 450

Query: 560 IKRL 571
           I+++
Sbjct: 451 IRKI 454



to top

>AK071766:Os02g0678400 |
          Length = 203

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 8   P*GRWQRYPSERLRLQSNPSTSPGAGAFGCSVPMASSTCSDDKVAPLVQKHAPAGNP 178
           P  R +R P  R R  S+ +  PG G+  CS   A    S    AP   + AP+  P
Sbjct: 48  PPPRSRRRPRSRRRTSSSSTAGPG-GSGACSASSAPRGASPSPTAPGASRTAPSSRP 103



to top

>AK110192: |
          Length = 849

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 71  SPGAGAFGCSVPMASSTCSDDKVAPL--VQKHAPAGNP 178
           SPGA A   S+P +SST + +   P    Q+H P G P
Sbjct: 348 SPGAAAAANSLPASSSTTAGNGPLPAGWEQRHTPEGRP 385



to top

>AK105602:Os08g0369200 |
          Length = 511

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 559 LSVLLFHDARAVPPPSCSSRAGGAF 485
           L++ L H AR  PPP+ SSRA  A+
Sbjct: 82  LALSLLHAARLHPPPAASSRAADAY 106



to top

>AY644643:Os07g0655800 |
          Length = 299

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
 Frame = +2

Query: 428 KGRVTYELEVDEDDPRFKDECTTSSAGAG-----------RRRHR 529
           K  VT + EVD DD   +   T + AGAG           RRRHR
Sbjct: 130 KSMVTVDAEVDTDDDALRVNGTGAGAGAGNHTRGSGGVVVRRRHR 174



to top

>AK106233:Os10g0524000 |
          Length = 414

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 392 EEQRDFKHQLKTKGRVTYELEVDEDDPRFKDECTTSSAGA 511
           EE+ D K QL   G + +  + D+DD    DE    +AGA
Sbjct: 180 EEEADDKEQLSPVGVMDFPFDEDDDDAAAVDEDERVAAGA 219



to top

>AK065315:Os02g0675700 |
          Length = 646

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 56  SNPSTSPGAGAFGCSVPMASSTCSDDKVAPLVQKHAPAGNPEAL 187
           S+PS SP + +   +V   ++T +  + A   +K  PAG  +AL
Sbjct: 48  SSPSASPSSVSVATAVACTTTTTATTRSATRPRKRTPAGQGQAL 91



to top

>AK103713:Os04g0376500 |
          Length = 347

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 12  KAAGSAILPSGSGSNPIQAHLPEPAPL 92
           KAAG   LP    SNPI   +PEP+ L
Sbjct: 285 KAAGEEPLPEEDPSNPIFKPIPEPSRL 311



to top

>AK061349:Os04g0376500 |
          Length = 330

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 12  KAAGSAILPSGSGSNPIQAHLPEPAPL 92
           KAAG   LP    SNPI   +PEP+ L
Sbjct: 268 KAAGEEPLPEEDPSNPIFKPIPEPSRL 294


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 26,368,719
Number of extensions: 598787
Number of successful extensions: 1968
Number of sequences better than 10.0: 9
Number of HSP's gapped: 1967
Number of HSP's successfully gapped: 9
Length of query: 309
Length of database: 15,399,855
Length adjustment: 100
Effective length of query: 209
Effective length of database: 11,395,755
Effective search space: 2381712795
Effective search space used: 2381712795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top