ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf137l17 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g12390:12006.t01116:unspliced-genomic transferase, transferring glycosyl groups, putative, expressed| Length = 6132 Score = 39.1 bits (79), Expect = 0.031 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -1 / -1 Query: 553 QNKSRTQTKFPRKSKQTDGSWHAAGSEVAGLRYHVCEHKSMEFKIPNDSLRHTSPRHRAK 374 + K++ TK S + +W S A R+H H+ F++ + H H+ Sbjct: 1170 ERKTQLNTKKNSNSAKVSRNWSRESSVNAPSRHHTNSHRQPSFEMAENDATHPLTPHQCA 991 Query: 373 AHRTE 359 HRTE Sbjct: 990 DHRTE 976
>LOC_Os05g07720:12005.t00652:unspliced-genomic alliin lyase 2 precursor, putative, expressed| Length = 2990 Score = 28.6 bits (56), Expect(2) = 0.13 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 / -1 Query: 561 TAPKTNQEHRQNSLENPNKQMAHGMPPGQK*LV 463 TA T + R+ S NP + H +P +K*L+ Sbjct: 668 TALPTRRWRRRTSRSNPGSRNQHRLPTSEK*LI 570 Score = 25.8 bits (50), Expect(2) = 0.13 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = -1 / -1 Query: 442 HKSMEFKIPNDSLRHTSPRHRA 377 H E KI RH +PRH A Sbjct: 479 HHHKEIKIGTKLTRHATPRHAA 414
>LOC_Os02g44730:12002.t04063:unspliced-genomic tetracycline transporter protein, putative, expressed| Length = 2913 Score = 36.8 bits (74), Expect = 0.15 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 / -2 Query: 194 FLAACWRRTIAILGQEQKKPDMK 126 + + CW+RTIA+L Q+ KPD K Sbjct: 1322 WFSECWKRTIALLNQQATKPDCK 1254
>LOC_Os04g52960:12004.t04770:unspliced-genomic nucleolin, putative, expressed| Length = 7118 Score = 35.4 bits (71), Expect = 0.39 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 / -1 Query: 603 IRTIFFFILAMQKDTAPKTNQEHRQNS 523 IRTIF FIL +Q+ P+ HR+NS Sbjct: 4601 IRTIFRFILGLQRGVPPRGQDYHRKNS 4521
>LOC_Os01g61110:12001.t05491:unspliced-genomic ulp1 protease family, C-terminal catalytic domain containing protein| Length = 10381 Score = 29.0 bits (57), Expect(2) = 0.40 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +3 / +3 Query: 147 FLA*NCNCSPPTCGEESILRPDRTRGEGTFLALPVCF 257 FL * NC+PPT E R +R R + L+L + F Sbjct: 3138 FLL*ISNCAPPTQRENFGQRRERGRKRNSALSLSLSF 3248 Score = 23.5 bits (45), Expect(2) = 0.40 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +2 / +1 Query: 38 PLSDIGFSPRLDP 76 PLSD+GF LDP Sbjct: 3052 PLSDVGFLFGLDP 3090
>LOC_Os11g24320:12011.t02053:unspliced-genomic conserved hypothetical protein| Length = 3720 Score = 34.5 bits (69), Expect = 0.73 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 / -1 Query: 510 LDFLGNFVCVLDLFWVLCPFAWRG 581 L+F+GNFV + L+W L F W G Sbjct: 2211 LEFIGNFVMCVLLYWTLRSFRWLG 2140
>LOC_Os02g29870:12002.t02680:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 8295 Score = 34.5 bits (69), Expect = 0.73 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +3 / +2 Query: 237 LALPVCFLSSGRPLFIQDLPVTKQINFYTQVICFRYCICPFSVLC 371 L LP+ FLSS P +Q PV + +++ + C C F C Sbjct: 4418 LPLPLLFLSSPAPPLVQPSPVATAVVVHSRSLVSYCCFC*FPCCC 4552
>LOC_Os04g05430:12004.t00424:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass, expressed| Length = 11727 Score = 29.5 bits (58), Expect(2) = 0.76 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 / +3 Query: 246 PVCFLSSGRPLFIQDLPVTKQINFYTQVICFRYCICPFSVLC 371 P+ FLSS P +Q PV + ++ + C C F C Sbjct: 1203 PLLFLSSPAPPLVQPSPVATAVVVRSRSLVSYCCFC*FPCCC 1328 Score = 28.1 bits (55), Expect(2) = 0.76 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +1 / +2 Query: 523 GILSVFLICFGCCVLLHGED 582 GI+S ++C GC + + GE+ Sbjct: 5021 GIISSSVVCLGCAISIDGEE 5080
>LOC_Os09g12340:12009.t01024:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1335 Score = 34.1 bits (68), Expect = 1.0 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 / +3 Query: 484 AGSEVAGLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 +G G+ Y C H S +S+ H+SP H+++ TE ++ R + Sbjct: 78 SGPPGRGIGYR*CRHISAHQCRSGESIDHSSPAHQSRQRYTEGNPLRSRSE 230
>LOC_Os05g28680:12005.t02516:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5715 Score = 34.1 bits (68), Expect = 1.0 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S +S+ H+SP H+++ TE ++ R + Sbjct: 582 GIGYRGCRHISAHQCRSGESIDHSSPAHQSRQRYTEGNPLRSRSE 716
>LOC_Os05g08610:12005.t00740:unspliced-genomic protein binding protein, putative, expressed| Length = 4778 Score = 34.1 bits (68), Expect = 1.0 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +2 / -3 Query: 125 FSCPVSSVLGLKLQLFAANMRRGIYP*ARSNQRGGHFPSSPRLLFKL 265 FSC V LG KL +A M R ++ A + FPS R+ F L Sbjct: 4317 FSCEV*KSLGEKLTASSAEMTRSLFVPAATTPTPTSFPSPSRVFFDL 4177
>LOC_Os04g39710:12004.t03538:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4584 Score = 34.1 bits (68), Expect = 1.0 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S +S H+ P H+++ H TE ++ R + Sbjct: 699 GIGYR*CRHVSAHQCRSGESSGHSGPTHQSRQHYTEGNPLRSRSE 833
>LOC_Os03g36860:12003.t03150:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2341 Score = 34.1 bits (68), Expect = 1.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 / +2 Query: 342 TENKLPAYRNLSALSPANPG*TEGGRSLKSRRGELGKCPP 223 T + R+ S SP PG + +L RRG+LG C P Sbjct: 149 TPRRASGSRHPSTASPGKPGAGDSCSALAGRRGQLGHCCP 268
>LOC_Os01g56630:12001.t05073:unspliced-genomic dymeclin, putative, expressed| Length = 6981 Score = 34.1 bits (68), Expect = 1.0 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -1 / -3 Query: 232 VPSPLVRSGLRIDSSPHVGGEQLQF*AKNRRNRT*KANQRRGGINTAHEKSRR 74 VP PL+R G P +GG++++ A RR + +RR G + RR Sbjct: 352 VPRPLLREGQLEQLPPELGGDRVRLPADQRREHLLRRPRRRRGPRHRAQPRRR 194
>LOC_Os01g71620:12001.t06455:unspliced-genomic expressed protein| Length = 7591 Score = 30.4 bits (60), Expect(2) = 1.3 Identities = 21/62 (33%), Positives = 26/62 (41%) Frame = +2 / +1 Query: 101 YPAPTLICFSCPVSSVLGLKLQLFAANMRRGIYP*ARSNQRGGHFPSSPRLLFKLRPPSV 280 +P P L + S L L L + RR A S P SPR L +L PPS Sbjct: 73 WPHPALAAAALTHSPPSRLSLSLSLSPSRRRCLRLAPSPSSSPPPPPSPRFLPQLYPPSP 252 Query: 281 YP 286 +P Sbjct: 253 HP 258 Score = 25.8 bits (50), Expect(2) = 1.3 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = +3 / +1 Query: 303 KQINFYTQVICFRYCICPFSVLC 371 K I F+ I CP+S+LC Sbjct: 4420 KVIEFFAVTIVSPVMFCPYSILC 4488
>LOC_Os05g25300:12005.t02186:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5386 Score = 33.1 bits (66), Expect = 1.9 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = -1 / +1 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S +S RH+ P H+++ TE ++ R + Sbjct: 3010 GIGYR*CRHVSAHQCRSRESNRHSGPAHQSRQRYTEGNPLRSRSE 3144
>LOC_Os03g44870:12003.t03871:unspliced-genomic hypothetical protein| Length = 1042 Score = 33.1 bits (66), Expect = 1.9 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = -2 / +2 Query: 399 TPRRATGRKHTEQRTGRCNTENKLPAYRNLSALSPANPG*TEGGRSLKSRRGELGKCPPL 220 +P R K T R R + P + + LSP P + G S+ GE +CP Sbjct: 119 SPERERVHKVTSPRRKRHPQASMSPILEDQAELSPKTPLRSAGSPRS*SKSGECYRCPAY 298 Query: 219 WFD 211 W + Sbjct: 299 WLN 307
>LOC_Os02g46010:12002.t04188:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2414 Score = 33.1 bits (66), Expect = 1.9 Identities = 12/45 (26%), Positives = 25/45 (55%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S + +++ ++SP H+A++ TE ++ R + Sbjct: 624 GIGYR*CWHVSARQRRSGETIDYSSPAHQARSSDTEGNSLRSRSE 758
>LOC_Os12g15540:12012.t01409:unspliced-genomic hypothetical protein| Length = 250 Score = 27.6 bits (54), Expect(2) = 2.3 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -2 / -2 Query: 600 RTIFFFILAMQKDTAPKTNQEHRQNSLENPNKQMAHGMPPGQ 475 + I FILA+ + P Q+ ++N + Q H PP Q Sbjct: 249 QAIIKFILAVNRSFLPTLFQQMKKNQQHECHSQHLHESPPLQ 124 Score = 21.7 bits (41), Expect(2) = 2.3 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = -2 / -3 Query: 255 SRRGELGKCPPLW 217 SR +GKCP W Sbjct: 104 SRSHAMGKCPSPW 66
>LOC_Os04g54930:12004.t04966:unspliced-genomic multidrug resistance protein 11, putative, expressed| Length = 6404 Score = 27.2 bits (53), Expect(2) = 2.4 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = -2 / -1 Query: 309 SALSPANPG*TEGGRSLKSRRGELG 235 SA SPA P T RSLK RR G Sbjct: 1289 SARSPAAPRCTSSTRSLKPRRDNRG 1215 Score = 22.6 bits (43), Expect(2) = 2.4 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 / -2 Query: 177 AANNCNFRPRTEETGHEKQINV 112 AA N RPR HEK+ N+ Sbjct: 1114 AAMNSGKRPRRRIRRHEKRTNM 1049
>LOC_Os06g14510:12006.t01326:unspliced-genomic glucose-6-phosphate isomerase, cytosolic B, putative, expressed| Length = 7151 Score = 32.7 bits (65), Expect = 2.6 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -3 / +1 Query: 503 RWLMACRRVRSSWFKISCL 447 RWL+ R+ RS W++I CL Sbjct: 433 RWLLVGRKARSIWYQIGCL 489
>LOC_Os03g63040:12003.t05525:unspliced-genomic expressed protein| Length = 5914 Score = 32.7 bits (65), Expect = 2.6 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 / -3 Query: 315 FYTQVICFRYCICPFSVLCAF 377 F + CF C CPFS LC F Sbjct: 3308 FLLLIPCFYLCSCPFSCLCVF 3246
>LOC_Os03g20020:12003.t01764:unspliced-genomic beta-fructofuranosidase, putative, expressed| Length = 4557 Score = 32.7 bits (65), Expect = 2.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 / +2 Query: 315 FYTQVICFRYCICPFSVLCAFARWRGEV*RRE 410 F+ ++C CIC FS L +RW G * E Sbjct: 3899 FFPPIVCLIICIC*FSSL*PVSRWVGVT*HSE 3994
>LOC_Os03g01110:12003.t00011:unspliced-genomic RNA methyltransferase, TrmH family protein, expressed| Length = 13313 Score = 32.7 bits (65), Expect = 2.6 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +1 / +2 Query: 541 LICFGCCVLLHGE 579 LICFGCCVL +G+ Sbjct: 9950 LICFGCCVLFYGD 9988
>LOC_Os03g27970:12003.t02470:unspliced-genomic pre-mRNA-splicing factor PRP17, putative, expressed| Length = 3574 Score = 27.2 bits (53), Expect(2) = 3.4 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -1 / +3 Query: 574 HAKGHSTQNKSRTQTKFPR 518 ++KG S QN+++T FPR Sbjct: 30 NSKGKSNQNRNQTSPNFPR 86 Score = 22.1 bits (42), Expect(2) = 3.4 Identities = 7/12 (58%), Positives = 7/12 (58%) Frame = -2 / +3 Query: 516 NPNKQMAHGMPP 481 NPN HG PP Sbjct: 93 NPNPTRRHGSPP 128
>LOC_Os09g35790:12009.t03057:unspliced-genomic heat shock factor protein 7, putative, expressed| Length = 3914 Score = 26.3 bits (51), Expect(3) = 3.5 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +3 / +3 Query: 174 PPTCGEESILRPDRTRGEGTFLALPVCFLSSG 269 PP E+ R R+R G + P C SG Sbjct: 1332 PPAAAAEAARRRRRSRTRGPYTGQPPCTTRSG 1427 Score = 23.1 bits (44), Expect(3) = 3.5 Identities = 7/16 (43%), Positives = 13/16 (81%) Frame = +3 / +1 Query: 54 GLALVLILLDFSCAVF 101 GLA+ ++ LDF+C ++ Sbjct: 478 GLAMSVMCLDFACLLY 525 Score = 23.1 bits (44), Expect(3) = 3.5 Identities = 6/22 (27%), Positives = 12/22 (54%) Frame = +3 / +2 Query: 297 VTKQINFYTQVICFRYCICPFS 362 + + + Q +C +C+C FS Sbjct: 3743 IVEGLKLTLQALCVCWCVCVFS 3808
>LOC_Os06g30920:12006.t02794:unspliced-genomic AGP16, putative, expressed| Length = 3059 Score = 32.2 bits (64), Expect = 3.6 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 / -1 Query: 309 INFYTQVICFRYCICPFSVLCAFARWRGE 395 +NFYT+ F+Y + P+ L +F R RG+ Sbjct: 1118 VNFYTKHGKFQYSVVPWKSLSSFYRMRGQ 1032
>LOC_Os02g57800:12002.t05351:unspliced-genomic rf1 protein, mitochondrial precursor, putative, expressed| Length = 5139 Score = 32.2 bits (64), Expect = 3.6 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +3 / -2 Query: 456 YLKPATSDPAACHEPSVCLDFLGNFVCVLDLFWVLCPFA 572 YL P S P CLD L ++ V +FW C A Sbjct: 3098 YLPPNHSPSDETARPLTCLDALKQYISVKYVFWDFCSLA 2982
>LOC_Os01g29830:12001.t06800:unspliced-genomic expressed protein| Length = 2770 Score = 32.2 bits (64), Expect = 3.6 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +3 / +2 Query: 489 CHEPSVCLDFLGNFVCVLDLFWVLCPFAWRG 581 C PS+CL + N++C + + C W+G Sbjct: 1301 CLHPSLCLS*VYNYLCYIPFSELYCVLGWQG 1393
>LOC_Os04g50850:12004.t04563:unspliced-genomic pepsin A, putative, expressed| Length = 1609 Score = 32.2 bits (64), Expect = 3.6 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -2 / +3 Query: 267 RSLKSRRGELGKCPPLWF 214 R + RRGE+G+ PP+WF Sbjct: 876 RRRRRRRGEIGELPPVWF 929
>LOC_Os01g71810:12001.t06473:unspliced-genomic glucan endo-1,3-beta-glucosidase GV, putative, expressed| Length = 2770 Score = 32.2 bits (64), Expect = 3.6 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 / -1 Query: 344 LHLPVLCSVCFRPVARRGVTKRIIRNFEFHRFVFTNMIS 460 LH+ +LC+ R R+ T I+R FEF+ F+ + +S Sbjct: 616 LHISLLCTSSERGEERKNSTCHILRPFEFNFFMVGSCVS 500
>LOC_Os01g13360:12001.t01198:unspliced-genomic phosphatidylinositol 3- and 4-kinase family protein, expressed| Length = 3511 Score = 32.2 bits (64), Expect = 3.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +1 / -3 Query: 382 GGAARCDEENHSEF*IP*ICVHKHDILNQLLLTRRHAMSH 501 G + C + NH+ I I +HKH+ILN+L + H +H Sbjct: 773 GQRSMC*DINHNFDLIILITLHKHNILNKLNIVLPHKKAH 654
>LOC_Os02g12680:12002.t01065:unspliced-genomic cytochrome P450 74A3, putative, expressed| Length = 1721 Score = 28.6 bits (56), Expect(2) = 3.7 Identities = 16/49 (32%), Positives = 20/49 (40%) Frame = -2 / -2 Query: 390 RATGRKHTEQRTGRCNTENKLPAYRNLSALSPANPG*TEGGRSLKSRRG 244 R GR+ +R G + A R A P P GGR +RRG Sbjct: 493 RGAGRRRRGRRAGGGRRRARATACRCRRACRPCPPWSRRGGRGSCARRG 347 Score = 24.0 bits (46), Expect(2) = 3.7 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = -1 / -3 Query: 442 HKSMEFKIPNDSLRHTSPRHR 380 H E +P + LRH P HR Sbjct: 1512 HVGGERVVPPEQLRHHQPPHR 1450
>LOC_Os07g37560:12007.t03425:unspliced-genomic myosin-5C, putative, expressed| Length = 8899 Score = 31.8 bits (63), Expect = 4.9 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = -3 / +3 Query: 500 WLMACRRVRSSWFK 459 WL CR VR+SWFK Sbjct: 8256 WLPCCREVRTSWFK 8297
>LOC_Os03g01790:12003.t00072:unspliced-genomic transposon protein, putative, unclassified| Length = 3952 Score = 31.8 bits (63), Expect = 4.9 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 / +1 Query: 318 YTQVICFRYCICPFSVLCAF 377 YT+ +CF C C F+ C+F Sbjct: 391 YTRTVCFASCYCSFTSQCSF 450
>LOC_Os01g11414:12001.t01012:unspliced-genomic calcium ion binding protein, putative, expressed| Length = 4957 Score = 31.8 bits (63), Expect = 4.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 / +2 Query: 462 KPATSDPAACHEPSVCLDFLGNFVCVLDLFWVLCPFA 572 KP++ +P CH+ S +GN +L F +C F+ Sbjct: 1895 KPSSLNPFVCHKDSNSP*IIGNIALILVKFVAICSFS 2005
>LOC_Os08g39810:12008.t03712:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 8109 Score = 31.8 bits (63), Expect = 4.9 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQ 344 G+ Y C H S +S+ H+SP H+++ TE ++ Sbjct: 7149 GIGYR*CRHVSAHQCRSGESIGHSSPAHQSRQRYTEENPLR 7271
>LOC_Os07g41640:12007.t03819:unspliced-genomic DNA binding protein, putative, expressed| Length = 4446 Score = 31.8 bits (63), Expect = 4.9 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +2 / +3 Query: 86 FMCRVYPAPTLICFSCPVSSVLGLKLQLFAANMRRG 193 FMC + PTL+C SC V L +RRG Sbjct: 2094 FMCHLLCRPTLLCLSCLRRKVAILHTWKICTKIRRG 2201
>LOC_Os02g47270:12002.t04312:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4201 Score = 31.8 bits (63), Expect = 4.9 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQ 344 G+ Y C H S +S+ H+SP H+++ TE +Q Sbjct: 582 GIGYR*CRHISTHQCRSGESIDHSSPAHQSRQLYTEGNPLQ 704
>LOC_Os03g28300:12003.t02500:unspliced-genomic ATP binding protein, putative, expressed| Length = 7759 Score = 30.4 bits (60), Expect(2) = 5.6 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 / -2 Query: 592 FLLHPRHAKGHSTQNKSR 539 F HPR + HST+NKSR Sbjct: 4086 FWSHPRKSSSHSTRNKSR 4033 Score = 23.5 bits (45), Expect(2) = 5.6 Identities = 11/40 (27%), Positives = 18/40 (45%) Frame = -1 / -3 Query: 472 VAGLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENG 353 + L HVC S+ + +P DS+ + A+ R G Sbjct: 1526 LVALSGHVCSSISLSWMMPGDSMSPSFHLTYARGFRRYRG 1407
>LOC_Os03g23250:12003.t02070:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6664 Score = 25.4 bits (49), Expect(2) = 5.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 / +2 Query: 297 PANPG*TEGGRSLKSRRGELGKCPPLWF 214 PA G +GG+ K++R + G PP F Sbjct: 755 PAIGGGIQGGKRGKTKRNQWGLIPPNQF 838 Score = 23.1 bits (44), Expect(2) = 5.9 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = -1 / +1 Query: 214 RSGLRIDSSPHVGGEQLQF*AKNRRNRT*KANQRRGGINTA 92 RSG R+ H GG + Q R A + GG+ A Sbjct: 925 RSGTRLTGGSHAGGARRQRTCGARARGKEAAARAGGGLGRA 1047
>LOC_Os02g12320:12002.t01030:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass, expressed| Length = 8540 Score = 27.6 bits (54), Expect(2) = 6.1 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = +3 / +1 Query: 246 PVCFLSSGRPLFIQDLPVTKQINFYTQVICFRYCICPFSVLC 371 P+ FLSS P +Q PV + ++ C C F C Sbjct: 64 PLLFLSSPVPPLVQPSPVATAVVVRSRSFVSYCCFC*FPCCC 189 Score = 26.3 bits (51), Expect(2) = 6.1 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +1 / +1 Query: 523 GILSVFLICFGCCVLLHGED 582 GI+S ++C GC + + GE+ Sbjct: 3880 GIISSSVVCPGCAISIDGEE 3939
>LOC_Os07g39620:12007.t03623:unspliced-genomic C2 domain containing protein, expressed| Length = 2258 Score = 31.3 bits (62), Expect = 6.7 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = -3 / -2 Query: 398 HLAAPPGESTQNRERADAIPKTNYLRIEIYLLCHRQILDKQRA 270 H APP R R +P+ R+ + L+ +LD RA Sbjct: 904 HRVAPPAVDDLRRRRRRPLPRQRQPRVHVLLVVDADVLDVPRA 776
>LOC_Os04g52606:12004.t04735:unspliced-genomic SHR5-receptor-like kinase, putative, expressed| Length = 10687 Score = 31.3 bits (62), Expect = 6.7 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 / +3 Query: 573 WRG*RRKSFGFPLICNKNEIFNQK 644 W+G R S G LICN EI+N K Sbjct: 1263 WQGLYRHSLGS*LICNTCEIYNSK 1334
>LOC_Os11g26730:12011.t02288:unspliced-genomic hypothetical protein| Length = 776 Score = 31.3 bits (62), Expect = 6.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -1 / -3 Query: 589 LLHPRHAKGHSTQNKSRTQTKFPRKSKQTDGSWHAAGS 476 LLHP H+ Q R + +PR S +W A GS Sbjct: 768 LLHPSSPSSHTGQMPPRPSSWWPRTSSGQVWAWGACGS 655
>LOC_Os10g25280:12010.t01949:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3168 Score = 31.3 bits (62), Expect = 6.8 Identities = 12/45 (26%), Positives = 21/45 (46%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S +S H+ P H+++ TE ++ R + Sbjct: 780 GIGYRRCRHVSTHQCGSGESSDHSGPTHQSRQRNTEGNPLRSRSE 914
>LOC_Os04g34380:12004.t03113:unspliced-genomic hypothetical protein| Length = 1511 Score = 31.3 bits (62), Expect = 6.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 / -1 Query: 393 RRATGRKHTEQRTGRCNTENKLPAYRNLSALSP 295 R++ R+ +R GRC TE+ P Y +A SP Sbjct: 299 RQSADRRRRRRRWGRCATEHLPPRYGLAAATSP 201
>LOC_Os02g41702:12002.t03757:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2208 Score = 31.3 bits (62), Expect = 6.8 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -1 / +1 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S +S H+ P H+++ TE ++ R Q Sbjct: 580 GIGYR*CRHVSAHQCRSGESSGHSGPAHQSRQRYTEGNLLRSRSQ 714
>LOC_Os02g12580:12002.t01055:unspliced-genomic OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed| Length = 4850 Score = 31.3 bits (62), Expect = 6.8 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 / +2 Query: 91 VPCLSRPDVDLLFMSGFFCSWPKIA 165 V C+S+ DV +FM+ FC +P +A Sbjct: 3998 VICMSQEDVSAVFMTVLFCMFPHLA 4072
>LOC_Os01g43980:12001.t03910:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7290 Score = 29.5 bits (58), Expect(2) = 7.1 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 / -2 Query: 202 RIDSSPHVGGEQLQF*AKNRRNRT*KANQRRGGINTAH 89 RI S+ + GE+ * + R+NRT +R+GG T H Sbjct: 191 RIRSATILCGEEKMS*GRARKNRTSTLCRRKGGKRTNH 78 Score = 24.0 bits (46), Expect(2) = 7.1 Identities = 8/20 (40%), Positives = 15/20 (75%) Frame = -3 / -1 Query: 344 IPKTNYLRIEIYLLCHRQIL 285 IPK++ +E L+CHR+++ Sbjct: 6213 IPKSSIQCLEA*LVCHRRLI 6154
>LOC_Os05g43070:12005.t03800:unspliced-genomic hypothetical protein| Length = 5006 Score = 30.9 bits (61), Expect = 9.2 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +3 / -3 Query: 162 CNCSPPTCGEESILRPDRTRGEGTFLALPVCFLSSGRPLFI 284 C C PP+C E R R RG+ ++ L F+ LFI Sbjct: 4431 CCCQPPSCTVEPRRRKGRERGDDKWVLLIYLFIYLFIYLFI 4309
>LOC_Os05g10580:12005.t00892:unspliced-genomic cullin-1, putative, expressed| Length = 4100 Score = 30.9 bits (61), Expect = 9.2 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +3 / +1 Query: 537 VLDLFWVLCPFAWRG 581 VL LFW +C F WRG Sbjct: 850 VLRLFWFVCDFFWRG 894
>LOC_Os03g45260:12003.t03903:unspliced-genomic membrin 11, putative, expressed| Length = 4081 Score = 30.9 bits (61), Expect = 9.2 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +3 / -2 Query: 288 DLPVTKQINFYTQVICFRY 344 +LP+ +NF TQ+ CFR+ Sbjct: 3672 ELPLVSTVNFQTQICCFRH 3616
>LOC_Os01g27750:12001.t02476:unspliced-genomic shikimate biosynthesis protein aroDE, putative, expressed| Length = 13580 Score = 30.9 bits (61), Expect = 9.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 / +2 Query: 174 PPTCGEESILRPDRTRGEGTFLALPV 251 PP + S+ R RTRGE T L +P+ Sbjct: 137 PPLLADRSLARRRRTRGEMTLLCVPL 214
>LOC_Os10g32210:12010.t02539:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 714 Score = 30.9 bits (61), Expect = 9.3 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -1 / +3 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTE 359 G+ Y C H S +S+ H+SP H+++ TE Sbjct: 582 GIGYRGCRHISAHQCRSGESIDHSSPAHQSRQRYTE 689
>LOC_Os09g15270:12009.t01316:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5730 Score = 30.9 bits (61), Expect = 9.3 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 / +2 Query: 318 RNLSALSPANPG*TEGGRSLKSRRGELGKCPP 223 R S SP+ PG + +L R G+LG C P Sbjct: 173 RRTSTASPSKPGAGDSCSALAGRLGQLGHCCP 268
>LOC_Os03g63830:12003.t05600:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5665 Score = 30.9 bits (61), Expect = 9.3 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -1 / +1 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H S+ +S+ H+S H+++ TE ++ R + Sbjct: 799 GIGYR*CRHISVHQCRSGESIDHSSSAHQSRQRYTEGNPLRSRSE 933
>LOC_Os03g54860:12003.t04750:unspliced-genomic 60S ribosomal protein L13a-2, putative| Length = 1785 Score = 30.9 bits (61), Expect = 9.3 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -1 / -2 Query: 616 QINGNPNDFLLHPRH 572 + NGNP+DFL HP H Sbjct: 836 KFNGNPSDFLHHPDH 792
>LOC_Os03g23990:12003.t02094:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2554 Score = 30.9 bits (61), Expect = 9.3 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -1 / +2 Query: 466 GLRYHVCEHKSMEFKIPNDSLRHTSPRHRAKAHRTENGQMQYRKQ 332 G+ Y C H SM +S +T P H ++ TE ++ R + Sbjct: 818 GIGYRRCRHVSMHQCGSGESSDYTGPAH*SRQRNTEGNSLRPRSE 952
>LOC_Os02g46970:12002.t04283:unspliced-genomic 4-coumarate--CoA ligase 2, putative, expressed| Length = 3662 Score = 30.9 bits (61), Expect = 9.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 / +3 Query: 139 FFCSWPKIAIVRRQHAARNLSL 204 F +W + IVRRQH +R+L L Sbjct: 1872 FSITWQNVVIVRRQHPSRSLHL 1937
>LOC_Os02g14300:12002.t01225:unspliced-genomic hypothetical protein| Length = 2443 Score = 30.9 bits (61), Expect = 9.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 / -1 Query: 571 AKGHSTQNKSRTQTKFPRKSKQTDGSWHAAGSEVAGLRYHVCE 443 + H QN+S T+ +FP +++Q A S L YH+ E Sbjct: 1816 SSAHVKQNQSLTKIQFPIRARQHHAPLPVASSSDLCLPYHINE 1688 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 276,958,716 Number of extensions: 4765362 Number of successful extensions: 21938 Number of sequences better than 10.0: 61 Length of query: 218 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 170 Effective length of database: 52,912,542 Effective search space: 8995132140 Effective search space used: 8995132140 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
