ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf137k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AM260480.1| Ralstonia eutropha H16 chromosome 2 42 4.0
2gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 4.0
3gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genom... 42 4.0
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.0
5gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, com... 42 4.0
6emb|AL590411.7| Human DNA sequence from clone RP11-237J7 on chro... 42 4.0
7gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, com... 42 4.0
8emb|AM233972.1| Lathraea clandestina partial phya gene for phyto... 42 4.0

>emb|AM260480.1| Ralstonia eutropha H16 chromosome 2
          Length = 2912490
 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 831     gcaaggcgagaagcgcggccg 851
               |||||||||||||||||||||
Sbjct: 1835850 gcaaggcgagaagcgcggccg 1835870



to top

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 835     ggcgagaagcgcggccgccac 855
               |||||||||||||||||||||
Sbjct: 3484865 ggcgagaagcgcggccgccac 3484885



to top

>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete
             sequence
          Length = 131589

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 884   cactggtgcctggtggagtgg 904
             |||||||||||||||||||||
Sbjct: 73343 cactggtgcctggtggagtgg 73363



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 884      cactggtgcctggtggagtgg 904
                |||||||||||||||||||||
Sbjct: 18036399 cactggtgcctggtggagtgg 18036379



to top

>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence
          Length = 178965

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   cctggccgccggctgctaccc 493
             |||||||||||||||||||||
Sbjct: 43373 cctggccgccggctgctaccc 43353



to top

>emb|AL590411.7| Human DNA sequence from clone RP11-237J7 on chromosome 10 Contains two
              CpG islands, complete sequence
          Length = 128435

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    cctggccgccggctgctaccc 493
              |||||||||||||||||||||
Sbjct: 105528 cctggccgccggctgctaccc 105548



to top

>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence
          Length = 211403

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    cctggccgccggctgctaccc 493
              |||||||||||||||||||||
Sbjct: 199765 cctggccgccggctgctaccc 199785



to top

>emb|AM233972.1| Lathraea clandestina partial phya gene for phytochrome A, clone
           1595_4c_2
          Length = 1146

 Score = 42.1 bits (21), Expect = 4.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 489 taccccgaacgacttccaaat 509
           |||||||||||||||||||||
Sbjct: 822 taccccgaacgacttccaaat 842


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 127,557,113
Number of extensions: 5978853
Number of successful extensions: 100485
Number of sequences better than 10.0: 8
Number of HSP's gapped: 100485
Number of HSP's successfully gapped: 8
Length of query: 1046
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1023
Effective length of database: 18,503,978,556
Effective search space: 18929570062788
Effective search space used: 18929570062788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top