ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf134o11 |
|---|---|
| Clone Library Name | barley_pub |
>P26683:RPOD_ANASP RNA polymerase sigma factor rpoD - Anabaena sp. (strain PCC 7120)| Length = 390 Score = 194 bits (494), Expect = 1e-48 Identities = 109/325 (33%), Positives = 182/325 (56%), Gaps = 1/325 (0%) Frame = +2 Query: 872 DVVQCSVADSKKKDRPKKYGRVLGPDEPFRLFLRDRETTEFLTAKEERHLFSQIQNLMXX 1051 D A S+++ + KK ++ RL+L++ L A EE L +I +L+ Sbjct: 57 DAKSGKAAKSRRRTQSKKKHYT---EDSIRLYLQEIGRIRLLRADEEIELARKIADLLEL 113 Query: 1052 XXXXXXXXXXCGREPTLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKY 1231 R+P EWA+AV + + +HIGRR ++KM +SN RLV+ +A+KY Sbjct: 114 ERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKY 173 Query: 1232 QGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPE 1411 GL +DL+Q+G GL++ EKF+ KG +F TYA WWIRQAI ++I SR IRLP Sbjct: 174 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233 Query: 1412 SVYARLKKVGK-ARLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSN 1588 +Y + ++ K +L G +PT + +A R ++IEKL + + P S++ + Sbjct: 234 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 293 Query: 1589 DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLH 1768 + + E ++P+ V + ++R+ + + L LS RE++++ R+G+ DG KTL Sbjct: 294 EDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLE 352 Query: 1769 VIGDMYGLSKERIRQLQNRALDKLK 1843 IG ++ +++ERIRQ++ +AL KL+ Sbjct: 353 EIGQIFNVTRERIRQIEAKALRKLR 377
>P38023:RPOD_SYNP7 RNA polymerase sigma factor rpoD1 - Synechococcus sp. (strain PCC| 7942) (Anacystis nidulans R2) Length = 399 Score = 186 bits (473), Expect = 3e-46 Identities = 103/300 (34%), Positives = 169/300 (56%), Gaps = 1/300 (0%) Frame = +2 Query: 947 DEPFRLFLRDRETTEFLTAKEERHLFSQIQNLMXXXXXXXXXXXXCGREPTLPEWAQAVG 1126 ++ RL+L++ L A EE L QI +L+ R P+ EWA AV Sbjct: 88 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147 Query: 1127 MGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKF 1306 + + + GRR ++KM +SN RLV+ +A+KY GL +DL+Q+G GL++ EKF Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 207 Query: 1307 NPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGK-ARLECILEGEQPT 1483 + KG +F TYA WWIRQAI ++I SR IRLP +Y + ++ K +L G +PT Sbjct: 208 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 267 Query: 1484 NQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIM 1663 + +A R ++IEKL + + P S++ + + + E ++P+ V + + Sbjct: 268 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPEDEVAKNL 326 Query: 1664 MRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +R+ + L LS RE++++ R+G+ DG KTL IG ++ +++ERIRQ++ +AL KL+ Sbjct: 327 LREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>Q9Z7F0:RPOD_CHLPN RNA polymerase sigma factor rpoD - Chlamydia pneumoniae| (Chlamydophila pneumoniae) Length = 572 Score = 176 bits (447), Expect = 3e-43 Identities = 92/265 (34%), Positives = 159/265 (60%), Gaps = 1/265 (0%) Frame = +2 Query: 1097 TLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGC 1276 TL E+ + V M LQ + + +++M SN RLVI +A+KY GL DL+Q+G Sbjct: 296 TLEEFKKDVRM----LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGN 351 Query: 1277 CGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLE 1456 GLMK EKF +G +F TYA WWIRQA+ ++I +R IR+P + + KV + + Sbjct: 352 MGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKK 411 Query: 1457 CILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNID 1633 ++E G++PT + +A G++ +++ ++ + P S+Q +V +F + ED ++ Sbjct: 412 LMMETGKEPTPEELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVE 471 Query: 1634 SPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQ 1813 SP M++ +++E L L+ RE+ ++ HRFG+ DG+PKTL +G + +++ERIRQ Sbjct: 472 SPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQ 531 Query: 1814 LQNRALDKLKRSVSTQGFDVYLDLL 1888 ++ +AL K++ + ++ +LDLL Sbjct: 532 IEAKALRKMRHPIRSKQLRAFLDLL 556
>P18333:RPOD_CHLTR RNA polymerase sigma factor rpoD - Chlamydia trachomatis| Length = 571 Score = 175 bits (443), Expect = 8e-43 Identities = 101/309 (32%), Positives = 172/309 (55%), Gaps = 1/309 (0%) Frame = +2 Query: 965 FLRDRETTEFLTAKEERHLFSQIQNLMXXXXXXXXXXXXCGREPTLPEWAQAVGMGCKDL 1144 FL+ + L A+ ER+ F+ + L GR TL E+ + V M L Sbjct: 255 FLQLEQQINDLKARAERNKFAAAK-LAAARRKLHKREVAAGR--TLEEFKKDVRM----L 307 Query: 1145 QSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGC 1324 Q + + +++M SN RLVI +A+KY GL DL+Q+G GLMK EKF +G Sbjct: 308 QRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGY 367 Query: 1325 RFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVAR 1501 +F TYA WWIRQA+ ++I +R IR+P + + KV + + ++E G++PT + + Sbjct: 368 KFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGE 427 Query: 1502 RAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVR 1681 G + +++ ++ + P S+Q +V +F + ED ++SP M++ +++ Sbjct: 428 ELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKDKMK 487 Query: 1682 EFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQ 1861 E L L+ RE+ ++ HRFG+ DG PKTL +G + +++ERIRQ++ +AL K++ + ++ Sbjct: 488 EVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSK 547 Query: 1862 GFDVYLDLL 1888 +LDLL Sbjct: 548 QLRAFLDLL 556
>P56835:RPOD_CHLMU RNA polymerase sigma factor rpoD - Chlamydia muridarum| Length = 571 Score = 174 bits (440), Expect = 2e-42 Identities = 91/265 (34%), Positives = 157/265 (59%), Gaps = 1/265 (0%) Frame = +2 Query: 1097 TLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGC 1276 TL E+ + V M LQ + + +++M SN RLVI +A+KY GL DL+Q+G Sbjct: 296 TLEEFKKDVRM----LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGN 351 Query: 1277 CGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLE 1456 GLMK EKF +G +F TYA WWIRQA+ ++I +R IR+P + + KV + + Sbjct: 352 MGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKK 411 Query: 1457 CILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNID 1633 ++E G++PT + + G + +++ ++ + P S+Q +V + +F + ED ++ Sbjct: 412 LMMETGKEPTPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVE 471 Query: 1634 SPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQ 1813 SP M++ +++E L L+ RE+ ++ HRFG+ DG PKTL +G + +++ERIRQ Sbjct: 472 SPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQ 531 Query: 1814 LQNRALDKLKRSVSTQGFDVYLDLL 1888 ++ +AL K++ + ++ +LDLL Sbjct: 532 IEAKALRKMRHPIRSKQLRAFLDLL 556
>Q03066:RPSC_ANASP RNA polymerase sigma-C factor - Anabaena sp. (strain PCC 7120)| Length = 416 Score = 170 bits (430), Expect = 3e-41 Identities = 95/275 (34%), Positives = 163/275 (59%), Gaps = 5/275 (1%) Frame = +2 Query: 1082 CGREPTLPE----WAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLD 1249 C +P L E WA+ M ++L+ G + +E M ++N RLV+ VA+KYQ GL+ Sbjct: 143 CDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLE 202 Query: 1250 IEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARL 1429 + DLVQ+G GL + EKF+P+KG RF TYAYWWIRQ I ++I SR IRLP + +L Sbjct: 203 LLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKL 262 Query: 1430 KKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQ 1606 K+ KA+ + E G PT +++A ++ ++ ++ + + S++ +V + Sbjct: 263 NKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELG 322 Query: 1607 EITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMY 1786 E+ E + +P+ ++ R +++ ++ L L++RE++++ RFG+ DG P +L IG Sbjct: 323 ELLETDGV-TPEEMLMRESLQRDLQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRAL 381 Query: 1787 GLSKERIRQLQNRALDKLKRSVSTQGFDVYLDLLT 1891 LS+ER+RQ++++AL KL++ YL+ L+ Sbjct: 382 DLSRERVRQIESKALQKLRQPKRRNLIRDYLESLS 416
>P77994:RPOD_THEMA RNA polymerase sigma factor rpoD - Thermotoga maritima| Length = 399 Score = 170 bits (430), Expect = 3e-41 Identities = 84/246 (34%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 ++ +EK+ SN RLV+ +A++Y G GL +DL+Q+G GL+K EKF+ KG +F TYA Sbjct: 153 KKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYAT 212 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 WWIRQAI ++I +R IR+P + + K+ + R E + GE+P+ + +A+ G E Sbjct: 213 WWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPE 272 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ ++ ++ S++ + ++ + ++ D +I SP R++MR+++ + L LS Sbjct: 273 KIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLS 332 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE ++ R+G+ DG+PKTL +G + +++ERIRQ++ +AL KL+ ++ L Sbjct: 333 PREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLS 392 Query: 1883 LLTSND 1900 L+ N+ Sbjct: 393 LMDENE 398
>P52322:RPOD_MICAE RNA polymerase sigma factor rpoD1 - Microcystis aeruginosa| Length = 416 Score = 167 bits (423), Expect = 2e-40 Identities = 90/253 (35%), Positives = 147/253 (58%), Gaps = 3/253 (1%) Frame = +2 Query: 1094 PTLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDG 1273 P L EW + ++ GRR +EKM +SN RLV+ +A+KY GL +DL+Q+G Sbjct: 154 PLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 213 Query: 1274 CCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARL 1453 GL++ EKF+ KG +F TYA WWIRQAI ++I SR IRLP +Y + ++ K Sbjct: 214 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTK 273 Query: 1454 ECILEGE---QPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDP 1624 IL E +PT + +A + ++IEKL + + P S++ + + + E Sbjct: 274 --ILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD 331 Query: 1625 NIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKER 1804 ++P+ V + ++R+ + L LS RE++++ R+G+ DG KTL IG ++ +++ER Sbjct: 332 G-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRER 390 Query: 1805 IRQLQNRALDKLK 1843 IRQ++ +AL KL+ Sbjct: 391 IRQIEAKALRKLR 403
>P18182:HRDA_STRCO RNA polymerase principal sigma factor hrdA - Streptomyces coelicolor| Length = 396 Score = 166 bits (420), Expect = 4e-40 Identities = 86/249 (34%), Positives = 148/249 (59%), Gaps = 1/249 (0%) Frame = +2 Query: 1139 DLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSK 1318 DL + +GR + ++ +N RLV+ VA++Y G GL + DLVQ+G GL++ EKF+ ++ Sbjct: 148 DLDRLVVLGRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYAR 207 Query: 1319 GCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNV 1495 G +F TYA WWIRQA+ +++ +R IR+P V + +V + + + E G +PT Q V Sbjct: 208 GYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEV 267 Query: 1496 ARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQ 1675 A ++ E++ ++ ++P S+ V D V ++ ED + SP +++RQ Sbjct: 268 AAHLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQH 327 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 + L L RE+++V+ R+G+ DG P+TL IG ++G+++ERIRQ++++ L KL+ Sbjct: 328 LEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAY 387 Query: 1856 TQGFDVYLD 1882 YLD Sbjct: 388 ADQLRGYLD 396
>P18183:HRDB_STRCO RNA polymerase principal sigma factor hrdB - Streptomyces coelicolor| Length = 511 Score = 166 bits (419), Expect = 5e-40 Identities = 118/430 (27%), Positives = 211/430 (49%), Gaps = 12/430 (2%) Frame = +2 Query: 629 PVTTSTSTPDAQSGAILDRGATSAATVMKEVTILTEESGTSVESKHPYDKLLSNGQVFIR 808 PVT+ +T A A AT A V +E + + K K + + Sbjct: 101 PVTSRKATAPAAPAA----PATEPAAVEEEAPAKKAAAKKTTAKKATAKKTTAKKAAAKK 156 Query: 809 ST------RLLERRSKKRNVPRASTS----TDVVQCSVADSKKKDRPKKYGRVLGPD-EP 955 +T LLE + + P+A+T T+ ++D + D P + G +P Sbjct: 157 TTAKKEDGELLEDEATEE--PKAATEEPEGTENAGFVLSDEDEDDAPAQQVAAAGATADP 214 Query: 956 FRLFLRDRETTEFLTAKEERHLFSQIQNLMXXXXXXXXXXXXCGREPTLPEWAQAVGMGC 1135 + +L+ L A++E L +I+ + E L + Sbjct: 215 VKDYLKQIGKVPLLNAEQEVELAKRIEAGLFA-------------EDKLANSDKLAPKLK 261 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 ++L+ GRR + + +N RLV+ +A++Y G G+ DL+Q+G GL++ EKF+ + Sbjct: 262 RELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 321 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI +++ +R IR+P + + K+ + + + + + G +PT + Sbjct: 322 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 381 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A+ ++ EK+ +++ R+P S+ + + F ++ ED P V ++++ Sbjct: 382 LAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQE 441 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 Q+ L LS RE +V RFG+ DG+PKTL IG +YG+++ERIRQ++++ + KL+ Sbjct: 442 QLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPS 501 Query: 1853 STQGFDVYLD 1882 +Q YLD Sbjct: 502 RSQVLRDYLD 511
>P74565:RPOD_SYNY3 RNA polymerase sigma factor rpoD - Synechocystis sp. (strain PCC| 6803) Length = 425 Score = 165 bits (418), Expect = 6e-40 Identities = 85/247 (34%), Positives = 145/247 (58%), Gaps = 1/247 (0%) Frame = +2 Query: 1106 EWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGL 1285 EW+Q + + + RR ++KM +SN RLV+ +A+KY GL +DL+Q+G GL Sbjct: 167 EWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 226 Query: 1286 MKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGK-ARLECI 1462 ++ EKF+ KG +F TYA WWIRQAI ++I SR IRLP +Y + ++ K +L Sbjct: 227 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQ 286 Query: 1463 LEGEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPD 1642 +PT + +A + ++IEKL + + P S++ + + + E ++P+ Sbjct: 287 EMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ETPE 345 Query: 1643 LVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQN 1822 V + ++R+ + L LS RE++++ R+G+ DG KTL IG ++ +++ERIRQ++ Sbjct: 346 DEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEA 405 Query: 1823 RALDKLK 1843 +AL KL+ Sbjct: 406 KALRKLR 412
>P33118:RPSB_CORDI RNA polymerase sigma factor sigB - Corynebacterium diphtheriae| Length = 329 Score = 165 bits (417), Expect = 8e-40 Identities = 83/248 (33%), Positives = 140/248 (56%), Gaps = 1/248 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 +DL+ + GR+ R + +N RLV+ +A++Y G G+ + DL+Q+G GL++ EKF+ S Sbjct: 80 RDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYS 139 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI + + SR IRLP + ++ K+ + + E + G + TN+ Sbjct: 140 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEE 199 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A +GI K+ L ++R P S+ V +++ + ED + V + Sbjct: 200 LAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHS 259 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 +R L L RE++++ R+G+ DG P+TL IG +GLS+ER+RQ++ + KL+ Sbjct: 260 DIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGA 319 Query: 1853 STQGFDVY 1876 + Y Sbjct: 320 RAEKLRAY 327
>P77951:HRDB_STRGR RNA polymerase principal sigma factor hrdB - Streptomyces griseus| Length = 514 Score = 165 bits (417), Expect = 8e-40 Identities = 84/250 (33%), Positives = 150/250 (60%), Gaps = 1/250 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 ++L+ GRR + + +N RLV+ +A++Y G G+ DL+Q+G GL++ EKF+ + Sbjct: 265 RELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 324 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI +++ +R IR+P + + K+ + + + + + G +PT + Sbjct: 325 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEE 384 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A+ ++ EK+ +++ R+P S+ + + F ++ ED P V ++++ Sbjct: 385 LAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQE 444 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 Q+ L LS RE +V RFG+ DG+PKTL IG +YG+++ERIRQ++++ + KL+ Sbjct: 445 QLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPS 504 Query: 1853 STQGFDVYLD 1882 +Q YLD Sbjct: 505 RSQVLRDYLD 514
>P52323:RPOD_BORBU RNA polymerase sigma factor rpoD - Borrelia burgdorferi (Lyme disease| spirochete) Length = 631 Score = 163 bits (413), Expect = 2e-39 Identities = 83/240 (34%), Positives = 145/240 (60%), Gaps = 1/240 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 + ++++ ++N RLV+ +A+KY GL DLVQ+G GL+K EKF +G +F TYA Sbjct: 389 QHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYAT 448 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECI-LEGEQPTNQNVARRAGISIE 1522 WWIRQAI +SI +R IR+P + ++ ++ + I + G+ PT++ ++ R G ++ Sbjct: 449 WWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGWELK 508 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ +K+ +R+P S++ + + + ED I +P ++++ Q+R LG L Sbjct: 509 KVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAILGTLP 568 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE+E+V+ RFG+ DG TL +G + +++ERIRQ++++AL +LK TQ YL+ Sbjct: 569 EREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLE 628
>O83506:RPOD_TREPA RNA polymerase sigma factor rpoD - Treponema pallidum| Length = 611 Score = 162 bits (411), Expect = 4e-39 Identities = 82/256 (32%), Positives = 154/256 (60%), Gaps = 5/256 (1%) Frame = +2 Query: 1130 GCKDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTF 1297 G + +IH G ++ ++K+ +N RLV+ +A+KY GL DLVQ+G GL+K Sbjct: 355 GILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAV 414 Query: 1298 EKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GE 1474 EKF KG +F TYA WWIRQAI +SI +R IR+P + ++ KV + + + + G Sbjct: 415 EKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGR 474 Query: 1475 QPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVD 1654 +P+++ +A++ ++EK+ ++K+ R+P S++ + + + + D ++++P V + Sbjct: 475 EPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTE 534 Query: 1655 RIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALD 1834 R++++++VR L L RE E++ RFG+ +TL +G + +++ERIRQ++ +AL Sbjct: 535 RVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALK 594 Query: 1835 KLKRSVSTQGFDVYLD 1882 +L+ ++ +LD Sbjct: 595 RLRHPRHSRRLKDFLD 610
>P0A4J0:RPOD_STRR6 RNA polymerase sigma factor rpoD - Streptococcus pneumoniae (strain| ATCC BAA-255 / R6) Length = 369 Score = 162 bits (410), Expect = 5e-39 Identities = 82/239 (34%), Positives = 149/239 (62%), Gaps = 2/239 (0%) Frame = +2 Query: 1136 KDLQSSIHIGR-RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNP 1312 K+L ++ G ++++A +N RLV+ +A++Y G G+ DL+Q+G GLMK +KF+ Sbjct: 118 KELALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDY 177 Query: 1313 SKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQ 1489 SKG +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G+ PT + Sbjct: 178 SKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPE 237 Query: 1490 NVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 1669 +A R ++ +K+ ++ ++P S++ + D + ED I++P RI++R Sbjct: 238 QIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLR 297 Query: 1670 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 +Q+ E L L+ RE+ ++ RFG+ DG+ +TL +G ++ +++ERIRQ++ +AL KL++ Sbjct: 298 EQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>P0A4I9:RPOD_STRPN RNA polymerase sigma factor rpoD - Streptococcus pneumoniae| Length = 369 Score = 162 bits (410), Expect = 5e-39 Identities = 82/239 (34%), Positives = 149/239 (62%), Gaps = 2/239 (0%) Frame = +2 Query: 1136 KDLQSSIHIGR-RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNP 1312 K+L ++ G ++++A +N RLV+ +A++Y G G+ DL+Q+G GLMK +KF+ Sbjct: 118 KELALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDY 177 Query: 1313 SKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQ 1489 SKG +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G+ PT + Sbjct: 178 SKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPE 237 Query: 1490 NVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 1669 +A R ++ +K+ ++ ++P S++ + D + ED I++P RI++R Sbjct: 238 QIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLR 297 Query: 1670 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 +Q+ E L L+ RE+ ++ RFG+ DG+ +TL +G ++ +++ERIRQ++ +AL KL++ Sbjct: 298 EQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>Q59914:HRDD_STRGR RNA polymerase principal sigma factor hrdD - Streptomyces griseus| Length = 332 Score = 162 bits (410), Expect = 5e-39 Identities = 90/254 (35%), Positives = 143/254 (56%), Gaps = 1/254 (0%) Frame = +2 Query: 1112 AQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMK 1291 + + G ++L++ + G R ++ RSN RLV+ VAR+Y GL + DL+Q+G GL++ Sbjct: 76 SDSAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 135 Query: 1292 TFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE- 1468 EKF+ +KG +F TYA WWIRQAI +SI SR IRLP + L ++ + + E E Sbjct: 136 AVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREN 195 Query: 1469 GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLV 1648 G P +A + E++ + R P S+ V F ++ ED + SP+ Sbjct: 196 GRDPEPAEIAAELSSTPERVTDVLDWARDPVSLNMSVDDEGETQFGDLLEDTSAVSPEQS 255 Query: 1649 VDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRA 1828 V ++ +++ + +G L R I++ R+GI DG +TL +G +GL++ERIRQ++ A Sbjct: 256 VLTLLRSEELDDLIGQLDDRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHA 315 Query: 1829 LDKLKRSVSTQGFD 1870 L +LKR GFD Sbjct: 316 LLELKRMAHDTGFD 329
>Q59996:RPSC_SYNY3 Probable RNA polymerase sigma-C factor - Synechocystis sp. (strain| PCC 6803) Length = 404 Score = 162 bits (409), Expect = 7e-39 Identities = 87/246 (35%), Positives = 148/246 (60%), Gaps = 1/246 (0%) Frame = +2 Query: 1109 WAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLM 1288 WA+ G+ ++L++ G + M ++N RLV+ VA+KYQ GL++ DL+Q+G GL Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 203 Query: 1289 KTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE 1468 + EKF+P+KG RF TY+YWWIRQ I ++I SR+IRLP + +L K+ +A+ + E Sbjct: 204 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQE 263 Query: 1469 -GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDL 1645 G P VA G++ E++ ++ + + S++ +V + ++ E + SP+ Sbjct: 264 KGHTPKIDEVAEELGMTPEQVREVLTQVPRSVSLELKVGQDKDTELMDLLE-TDTQSPED 322 Query: 1646 VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNR 1825 + R ++ ++E L L+ RE+E++ RFG DG +L IG + LS+ER+RQ++ + Sbjct: 323 ELMREALQNDMQEILLDLTPREQEVIALRFGFQDGVAHSLSEIGRILNLSRERVRQIEAK 382 Query: 1826 ALDKLK 1843 AL KL+ Sbjct: 383 ALQKLR 388
>P27785:RPOD_STRAU RNA polymerase sigma factor rpoD - Streptomyces aureofaciens| Length = 317 Score = 160 bits (406), Expect = 2e-38 Identities = 97/310 (31%), Positives = 165/310 (53%), Gaps = 1/310 (0%) Frame = +2 Query: 956 FRLFLRDRETTEFLTAKEERHLFSQIQNLMXXXXXXXXXXXXCGREPTLPEWAQAVGMGC 1135 FR +LR+ LTA EE L +++ + E L A Sbjct: 21 FRQYLREIGRIPLLTAAEEVDLARRVEAGLFA-------------EEKLGGAADLDSQLA 67 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 DL + +GR + ++ SN RLV+ VA++Y G GL + DLVQ+G GL++ EKF+ + Sbjct: 68 VDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA 127 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 +G +F TYA WWIRQA+ +++ +R IR+P V + +V + + + E G +PT + Sbjct: 128 RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEE 187 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 VA ++ E++ ++ ++P S+ V D V ++ ED + SP + + Sbjct: 188 VAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCE 247 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 + L L RE+++V+ R+G+ DG P+TL IG ++G+++ERIRQ++++ L+KL+ Sbjct: 248 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 307 Query: 1853 STQGFDVYLD 1882 YLD Sbjct: 308 FADQLRGYLD 317
>P0A602:RPOD_MYCTU RNA polymerase sigma factor rpoD - Mycobacterium tuberculosis| Length = 528 Score = 160 bits (406), Expect = 2e-38 Identities = 83/250 (33%), Positives = 145/250 (58%), Gaps = 1/250 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 +D+ G R + + +N RLV+ +A++Y G G+ DL+Q+G GL++ EKF+ + Sbjct: 279 RDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 338 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI +++ +R IR+P + + K+G+ + E + + G +PT + Sbjct: 339 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 398 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A+ I+ EK+ +++ R+P S+ + + ED V +++ Sbjct: 399 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQD 458 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 Q++ L LS RE +V RFG+ DG+P+TL IG +YG+++ERIRQ++++ + KL+ Sbjct: 459 QLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 518 Query: 1853 STQGFDVYLD 1882 +Q YLD Sbjct: 519 RSQVLRDYLD 528
>P0A603:RPOD_MYCBO RNA polymerase sigma factor rpoD - Mycobacterium bovis| Length = 528 Score = 160 bits (406), Expect = 2e-38 Identities = 83/250 (33%), Positives = 145/250 (58%), Gaps = 1/250 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 +D+ G R + + +N RLV+ +A++Y G G+ DL+Q+G GL++ EKF+ + Sbjct: 279 RDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 338 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI +++ +R IR+P + + K+G+ + E + + G +PT + Sbjct: 339 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEE 398 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A+ I+ EK+ +++ R+P S+ + + ED V +++ Sbjct: 399 LAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQD 458 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 Q++ L LS RE +V RFG+ DG+P+TL IG +YG+++ERIRQ++++ + KL+ Sbjct: 459 QLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPS 518 Query: 1853 STQGFDVYLD 1882 +Q YLD Sbjct: 519 RSQVLRDYLD 528
>Q60012:HRDD_STRVF RNA polymerase principal sigma factor hrdD - Streptomyces| viridifaciens Length = 332 Score = 160 bits (406), Expect = 2e-38 Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 1/246 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 ++LQ+ + G R ++ RSN RLV+ VAR+Y GL + DL+Q+G GL++ EKF+ Sbjct: 84 EELQALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYR 143 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI +SI SR IRLP + L ++ + + E E G P Sbjct: 144 KGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAE 203 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 VA G + E++ + R P S+ V F ++ ED + SP+ V ++ + Sbjct: 204 VAAELGSTPERVIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSE 263 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 ++ + +G L R I++ R+GI DG +TL +G +GL++ERIRQ++ AL +LK+ Sbjct: 264 ELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLA 323 Query: 1853 STQGFD 1870 GFD Sbjct: 324 RDTGFD 329
>O33662:RPOD_STRMU RNA polymerase sigma factor rpoD - Streptococcus mutans| Length = 371 Score = 160 bits (404), Expect = 3e-38 Identities = 81/238 (34%), Positives = 148/238 (62%), Gaps = 2/238 (0%) Frame = +2 Query: 1136 KDLQSSIHIGR-RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNP 1312 K+L ++ G ++++A +N RLV+ +A++Y G G+ DL+Q+G GLMK +KF+ Sbjct: 120 KELAIAVENGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDY 179 Query: 1313 SKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQ 1489 SKG +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G+ PT + Sbjct: 180 SKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPE 239 Query: 1490 NVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 1669 +A R ++ +K+ ++ ++P S++ + D + ED I++P R+++R Sbjct: 240 QIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLR 299 Query: 1670 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Q+ E L L+ RE+ ++ RFG+ DG+ +TL +G ++ +++ERIRQ++ +AL KL+ Sbjct: 300 EQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLR 357
>P59117:RPOD_LEPIN RNA polymerase sigma factor rpoD - Leptospira interrogans| Length = 585 Score = 158 bits (400), Expect = 8e-38 Identities = 102/399 (25%), Positives = 198/399 (49%), Gaps = 7/399 (1%) Frame = +2 Query: 707 VMKEVTILTEESGTSVESKHPYDKLLSNGQVFIRSTRLLERRSKKRNVPRASTSTDVVQC 886 + + V+ + + S TS + K +K+ ++ ++ + R L K+ + V + Sbjct: 195 LQEAVSKIRKYSETSKKYKEFKEKIDASTEIIHNAIRELGVSQKEIQKISQKIKSMVFRI 254 Query: 887 SVADSKKKDRPKKYGRVLGPDEPFRLFLRDRETTEFLTAK------EERHLFSQIQNLMX 1048 D +YG+ + + F F+ E + + K E R + I+N Sbjct: 255 KEIDRHFLKIKAQYGQDVRDIKAFNRFIEKNEKLDDIEVKMGVNIDEVREVIKDIRNNER 314 Query: 1049 XXXXXXXXXXXCGREPTLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARK 1228 +E + +W + + G +++ + ++++ ++N RLV+ +A++ Sbjct: 315 KLRRMEQEAGSTVQE--IKDWGEKIIKGEREISQA-------KKELVKANLRLVVSIAKR 365 Query: 1229 YQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLP 1408 Y G+ DL+Q+G GL+K +KF KG +F TYA WWIRQAI ++I +R IR+P Sbjct: 366 YANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVP 425 Query: 1409 ESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWS 1585 + ++ KV + I E G P N+ +A R G ++K+ +K R+P S++ V S Sbjct: 426 VHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGS 485 Query: 1586 NDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTL 1765 + + D +++P ++ +Q+R+ L L RE++++ RFG+ DG P+TL Sbjct: 486 EEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTL 545 Query: 1766 HVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 +G + +++ERIRQ++ +AL +L+ ++ Y+D Sbjct: 546 EEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
>P61540:RPOD_LEPIC RNA polymerase sigma factor rpoD - Leptospira interrogans serogroup| Icterohaemorrhagiae serovar copenhageni Length = 585 Score = 158 bits (400), Expect = 8e-38 Identities = 102/399 (25%), Positives = 198/399 (49%), Gaps = 7/399 (1%) Frame = +2 Query: 707 VMKEVTILTEESGTSVESKHPYDKLLSNGQVFIRSTRLLERRSKKRNVPRASTSTDVVQC 886 + + V+ + + S TS + K +K+ ++ ++ + R L K+ + V + Sbjct: 195 LQEAVSKIRKYSETSKKYKEFKEKIDASTEIIHNAIRELGVSQKEIQKISQKIKSMVFRI 254 Query: 887 SVADSKKKDRPKKYGRVLGPDEPFRLFLRDRETTEFLTAK------EERHLFSQIQNLMX 1048 D +YG+ + + F F+ E + + K E R + I+N Sbjct: 255 KEIDRHFLKIKAQYGQDVRDIKAFNRFIEKNEKLDDIEVKMGVNIDEVREVIKDIRNNER 314 Query: 1049 XXXXXXXXXXXCGREPTLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARK 1228 +E + +W + + G +++ + ++++ ++N RLV+ +A++ Sbjct: 315 KLRRMEQEAGSTVQE--IKDWGEKIIKGEREISQA-------KKELVKANLRLVVSIAKR 365 Query: 1229 YQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLP 1408 Y G+ DL+Q+G GL+K +KF KG +F TYA WWIRQAI ++I +R IR+P Sbjct: 366 YANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVP 425 Query: 1409 ESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWS 1585 + ++ KV + I E G P N+ +A R G ++K+ +K R+P S++ V S Sbjct: 426 VHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGS 485 Query: 1586 NDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTL 1765 + + D +++P ++ +Q+R+ L L RE++++ RFG+ DG P+TL Sbjct: 486 EEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTL 545 Query: 1766 HVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 +G + +++ERIRQ++ +AL +L+ ++ Y+D Sbjct: 546 EEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
>P18249:HRDD_STRCO RNA polymerase principal sigma factor hrdD - Streptomyces coelicolor| Length = 332 Score = 158 bits (400), Expect = 8e-38 Identities = 89/246 (36%), Positives = 140/246 (56%), Gaps = 1/246 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 ++LQ+ I R ++ RSN RLV+ VAR+Y GL + DL+Q+G GL++ EKF+ Sbjct: 84 EELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYR 143 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI +SI SR IRLP + L ++ + + E E G +P Sbjct: 144 KGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAE 203 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A G + E++ + R P S+ V F ++ ED + SP+ V ++ + Sbjct: 204 IAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQFGDLLEDTSAVSPEQSVLTLLRSE 263 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 ++ + +G L R I++ R+GI DG +TL +G +GL++ERIRQ++ AL +LK+ Sbjct: 264 ELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLA 323 Query: 1853 STQGFD 1870 GF+ Sbjct: 324 RDTGFE 329
>P55993:RPOD_HELPY RNA polymerase sigma factor rpoD - Helicobacter pylori (Campylobacter| pylori) Length = 671 Score = 156 bits (394), Expect = 4e-37 Identities = 86/233 (36%), Positives = 140/233 (60%), Gaps = 5/233 (2%) Frame = +2 Query: 1160 IGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTY 1339 I R + KMA+SN RLV+ +A+++ GL DL+Q+G GLMK +KF KG +F TY Sbjct: 428 ISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTY 487 Query: 1340 AYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGIS 1516 A WWI+QAI ++I +R IR+P + + ++ K + I E G++P + VA G+S Sbjct: 488 ATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLS 547 Query: 1517 IEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIM---MRQQVREF 1687 ++K+ + T++P S++ V ++D F + ED NI S +D IM ++ Q+ Sbjct: 548 LDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSS---IDHIMREDLKAQIESV 604 Query: 1688 LGILSTREKEIVEHRFGIYDGE-PKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 L L+ REK ++ RFG+ D E +TL IG +++ER+RQ+++ A+ KL+ Sbjct: 605 LDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLR 657
>Q9ZMY3:RPOD_HELPJ RNA polymerase sigma factor rpoD - Helicobacter pylori J99| (Campylobacter pylori J99) Length = 681 Score = 156 bits (394), Expect = 4e-37 Identities = 86/233 (36%), Positives = 140/233 (60%), Gaps = 5/233 (2%) Frame = +2 Query: 1160 IGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTY 1339 I R + KMA+SN RLV+ +A+++ GL DL+Q+G GLMK +KF KG +F TY Sbjct: 438 ISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTY 497 Query: 1340 AYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGIS 1516 A WWI+QAI ++I +R IR+P + + ++ K + I E G++P + VA G+S Sbjct: 498 ATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLS 557 Query: 1517 IEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIM---MRQQVREF 1687 ++K+ + T++P S++ V ++D F + ED NI S +D IM ++ Q+ Sbjct: 558 LDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSS---IDHIMREDLKAQIESV 614 Query: 1688 LGILSTREKEIVEHRFGIYDGE-PKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 L L+ REK ++ RFG+ D E +TL IG +++ER+RQ+++ A+ KL+ Sbjct: 615 LDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLR 667
>P18184:HRDC_STRCO RNA polymerase principal sigma factor hrdC - Streptomyces coelicolor| Length = 339 Score = 155 bits (393), Expect = 5e-37 Identities = 81/238 (34%), Positives = 141/238 (59%), Gaps = 2/238 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 + L+ ++H G+ ++ M R+N RLV+ +A+++ GL + D++Q+G GL++ EKF+ + Sbjct: 90 RTLEETVHDGQEAKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHT 149 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKA--RLECILEGEQPTNQ 1489 KG +F TYA WWIRQAI++ + H+R +RLP V +L+K+ K +L L+ E PT + Sbjct: 150 KGFKFSTYATWWIRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDRE-PTTE 208 Query: 1490 NVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 1669 VA +GI ++K+ L+ R S+ V ++ D + V + + Sbjct: 209 EVAAESGIDVDKVVWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALA 268 Query: 1670 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 ++RE +G L+ RE I+ R+G++DG P+TL + GL++ER+RQL+ +L L+ Sbjct: 269 AELREAVGTLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLR 326
>Q03065:RPSB_ANASP RNA polymerase sigma-B factor - Anabaena sp. (strain PCC 7120)| Length = 332 Score = 154 bits (390), Expect = 1e-36 Identities = 91/296 (30%), Positives = 156/296 (52%), Gaps = 1/296 (0%) Frame = +2 Query: 962 LFLRDRETTEFLTAKEERHLFSQIQNLMXXXXXXXXXXXXCGREPTLPEWAQAVGMGCKD 1141 ++L L+ ++E Q+Q +M REPTL EWA + + Sbjct: 27 IYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDV 86 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 L + G+ ++KM ++N RLV+ +A+KYQ L+ DL+Q+G GL + EKF+P+ G Sbjct: 87 LLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLG 146 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVA 1498 +F TYAYWWIRQ I ++I + SR IRLP + +L K+ + E + G +A Sbjct: 147 YKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIA 206 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQV 1678 + + ++ + R+P S+ ++ Q++ +D + SP+ +R ++ Q + Sbjct: 207 QALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDGM-SPERYAERELLYQDI 265 Query: 1679 REFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 L L+ ++KE++ RFG+ G TL I G+S+ER+RQ++ +AL L+R Sbjct: 266 HNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRR 321
>P52328:RPSD2_BACSP RNA polymerase sigma factor rpoD - Bacillus sp.| Length = 377 Score = 153 bits (387), Expect = 3e-36 Identities = 76/237 (32%), Positives = 142/237 (59%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 141 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWI 200 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + E G +PT + +A +S+EK+ Sbjct: 201 RQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVR 260 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED +P ++++Q+ + L L+ RE Sbjct: 261 EIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTERE 320 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 321 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 377
>P52326:RPOD_PSEFL RNA polymerase sigma factor rpoD - Pseudomonas fluorescens| Length = 615 Score = 153 bits (387), Expect = 3e-36 Identities = 85/254 (33%), Positives = 141/254 (55%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 361 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 420 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 421 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 480 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + + R + +K+ K+ ++P SM+ + ++ + ED + SP V Sbjct: 481 TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE 540 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +++ RE L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 541 SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 600 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 601 RHPTRSEHLRSFLD 614
>P26480:RPOD_PSEAE RNA polymerase sigma factor rpoD - Pseudomonas aeruginosa| Length = 617 Score = 152 bits (385), Expect = 4e-36 Identities = 83/254 (32%), Positives = 142/254 (55%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 K++ ++ IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 363 KEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 422 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 423 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 482 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + + R + +K+ K+ ++P SM+ + ++ + ED + SP + Sbjct: 483 TPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSE 542 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +++ RE L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 543 SLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 602 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 603 RHPSRSEHLRSFLD 616
>P58290:RPOD_LACLC RNA polymerase sigma factor rpoD - Lactococcus lactis subsp. cremoris| (Streptococcus cremoris) Length = 364 Score = 152 bits (385), Expect = 4e-36 Identities = 74/224 (33%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 ++ +A +N RLV+ +A++Y G G+ DL+Q+G GLMK +KF+ +KG +F TYA WWI Sbjct: 129 KQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDQTKGFKFSTYATWWI 188 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + E G P+ + + + ++ +K+ Sbjct: 189 RQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVR 248 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED I+SP +RI++R+Q+ E + L+ RE Sbjct: 249 EVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDRE 308 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 + ++ RFG+ DG TL +G + +++ERIRQ++ +A+ KL+ Sbjct: 309 ENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR 352
>P52329:RPOD_ENTFA RNA polymerase sigma factor rpoD - Enterococcus faecalis| (Streptococcus faecalis) Length = 368 Score = 152 bits (385), Expect = 4e-36 Identities = 75/240 (31%), Positives = 142/240 (59%), Gaps = 1/240 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 + ++++A +N RLV+ +A++Y G G+ DL+Q+G GLMK EKF+ KG +F TYA Sbjct: 129 QEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYAT 188 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 WWIRQAI ++I +R IR+P + + K+ + + + + + G +PT + + + E Sbjct: 189 WWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTE 248 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ ++ ++P S++ + D + ED + SP ++++Q+ + L L+ Sbjct: 249 KVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLT 308 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE+ ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 309 DREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 368
>Q04506:RPOD_LACLA RNA polymerase sigma factor rpoD - Lactococcus lactis subsp. lactis| (Streptococcus lactis) Length = 386 Score = 152 bits (384), Expect = 6e-36 Identities = 74/224 (33%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 ++ +A +N RLV+ +A++Y G G+ DL+Q+G GLMK +KF+ +KG +F TYA WWI Sbjct: 151 KQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWI 210 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + E G P+ + + + ++ +K+ Sbjct: 211 RQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVR 270 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED I+SP +RI++R+Q+ E + L+ RE Sbjct: 271 EVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDRE 330 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 + ++ RFG+ DG TL +G + +++ERIRQ++ +A+ KL+ Sbjct: 331 ENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR 374
>Q89B10:RPOD_BUCBP RNA polymerase sigma factor rpoD - Buchnera aphidicola subsp.| Baizongia pistaciae Length = 609 Score = 152 bits (383), Expect = 7e-36 Identities = 85/254 (33%), Positives = 141/254 (55%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 K++ I +G +R +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 355 KNINKRISLGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 414 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 415 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQEIGREP 474 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + ++ R I +K+ K+ ++P SM+ + +D + ED NI+ P Sbjct: 475 TPEELSERMLIPEDKIRKVLKIAKEPISMETPIGEDDDSHLGDFLEDTNIELPLDSATSA 534 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R + L L+TRE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 535 SLRSATKNVLSGLTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 594 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 595 RHPSRSEILRSFLD 608
>Q87DT7:RPOD_XYLFT RNA polymerase sigma factor rpoD - Xylella fastidiosa (strain| Temecula1 / ATCC 700964) Length = 618 Score = 151 bits (382), Expect = 1e-35 Identities = 79/240 (32%), Positives = 137/240 (57%), Gaps = 1/240 (0%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 + +++M +N RLVI +A+KY GL DL+Q+G GLMK KF +G +F TYA W Sbjct: 378 KAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATW 437 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEK 1525 WIRQAI +SI +R IR+P + + K+ + + + + G + T + +A+ + +K Sbjct: 438 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDK 497 Query: 1526 LAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILST 1705 + K+ ++P SM+ + ++ + EDPN++SP + + + VRE L L+ Sbjct: 498 IRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETVREVLAGLTP 557 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDL 1885 RE +++ RFGI TL +G + +++ERIRQ++ +AL KL+ ++ +LD+ Sbjct: 558 REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI 617
>Q9PDM9:RPOD_XYLFA RNA polymerase sigma factor rpoD - Xylella fastidiosa| Length = 618 Score = 151 bits (382), Expect = 1e-35 Identities = 79/240 (32%), Positives = 137/240 (57%), Gaps = 1/240 (0%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 + +++M +N RLVI +A+KY GL DL+Q+G GLMK KF +G +F TYA W Sbjct: 378 KAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATW 437 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEK 1525 WIRQAI +SI +R IR+P + + K+ + + + + G + T + +A+ + +K Sbjct: 438 WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDK 497 Query: 1526 LAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILST 1705 + K+ ++P SM+ + ++ + EDPN++SP + + + VRE L L+ Sbjct: 498 IRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETVREVLAGLTP 557 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDL 1885 RE +++ RFGI TL +G + +++ERIRQ++ +AL KL+ ++ +LD+ Sbjct: 558 REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI 617
>Q8P4H2:RPOD_XANCP RNA polymerase sigma factor rpoD - Xanthomonas campestris pv.| campestris Length = 624 Score = 151 bits (381), Expect = 1e-35 Identities = 82/255 (32%), Positives = 144/255 (56%), Gaps = 5/255 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ ++ G R+ +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 369 KDISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 428 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + + G + Sbjct: 429 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREA 488 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + +A+ + +K+ K+ ++P SM+ + ++ + ED N++SP I Sbjct: 489 TPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNI 548 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 + + VR+ L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 549 NLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 608 Query: 1841 KRSVSTQGFDVYLDL 1885 + ++ +LD+ Sbjct: 609 RHPSRSEQLRSFLDI 623
>Q8PG33:RPOD_XANAC RNA polymerase sigma factor rpoD - Xanthomonas axonopodis pv. citri| Length = 625 Score = 150 bits (379), Expect = 2e-35 Identities = 79/241 (32%), Positives = 138/241 (57%), Gaps = 1/241 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 R+ +++M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G +F TYA Sbjct: 384 RKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 443 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 WWIRQAI +SI +R IR+P + + K+ + + + + G + T + +A+ + + Sbjct: 444 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPED 503 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ K+ ++P SM+ + ++ + ED N++SP I + + VR+ L L+ Sbjct: 504 KIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDVLAGLT 563 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE +++ RFGI TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 564 PREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD 623 Query: 1883 L 1885 + Sbjct: 624 I 624
>P52327:RPOD_PSEPU RNA polymerase sigma factor rpoD - Pseudomonas putida| Length = 614 Score = 149 bits (377), Expect = 4e-35 Identities = 82/254 (32%), Positives = 140/254 (55%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 K++ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 360 KEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 419 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 420 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 479 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + + R + +K+ K+ ++P SM+ + ++ + ED + SP V Sbjct: 480 TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIYVATVE 539 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +++ R+ L L+ RE +++ RFGI TL +G + +++ERIRQ++ +A KL Sbjct: 540 SLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKL 599 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 600 RHPTRSEHLRSFLD 613
>P33656:RPOD_CLOAB RNA polymerase sigma factor rpoD - Clostridium acetobutylicum| Length = 378 Score = 149 bits (377), Expect = 4e-35 Identities = 80/250 (32%), Positives = 144/250 (57%), Gaps = 2/250 (0%) Frame = +2 Query: 1139 DLQSSIHIG-RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 DL I G R R+K+A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ Sbjct: 129 DLAQRIKNGDRSARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFK 188 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 KG +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G +P + Sbjct: 189 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEE 248 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A+ + ++K+ ++ ++P S++ + + + D +P M+++ Sbjct: 249 IAKIMDMPVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKE 308 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 Q+ + L L+ RE++++ RFG+ DG +TL +G + +++ERIRQ++ +AL KL+ Sbjct: 309 QLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPS 368 Query: 1853 STQGFDVYLD 1882 ++ YLD Sbjct: 369 RSKKLKDYLD 378
>P06224:RPOD_BACSU RNA polymerase sigma factor rpoD - Bacillus subtilis| Length = 371 Score = 149 bits (377), Expect = 4e-35 Identities = 75/237 (31%), Positives = 140/237 (59%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+ +G GLMK EKF+ KG +F TYA WWI Sbjct: 135 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIHEGNMGLMKAVEKFDYRKGYKFSTYATWWI 194 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G +PT + +A ++ EK+ Sbjct: 195 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVR 254 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 255 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDRE 314 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 315 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 371
>O66381:RPOD_BACHD RNA polymerase sigma factor rpoD - Bacillus halodurans| Length = 372 Score = 149 bits (377), Expect = 4e-35 Identities = 74/237 (31%), Positives = 143/237 (60%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 136 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWWI 195 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G +P+ + VA ++ EK+ Sbjct: 196 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKVR 255 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED + +P ++++Q+ + L L+ RE Sbjct: 256 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDRE 315 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 316 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 372
>Q8CP24:RPOD_STAES RNA polymerase sigma factor rpoD - Staphylococcus epidermidis (strain| ATCC 12228) Length = 368 Score = 148 bits (374), Expect = 8e-35 Identities = 74/237 (31%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ SKG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>Q5HNY7:RPOD_STAEQ RNA polymerase sigma factor rpoD - Staphylococcus epidermidis (strain| ATCC 35984 / RP62A) Length = 368 Score = 148 bits (374), Expect = 8e-35 Identities = 74/237 (31%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ SKG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>P0A0I9:RPOD_STAAW RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain MW2)| Length = 368 Score = 148 bits (373), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>Q6G905:RPOD_STAAS RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain| MSSA476) Length = 368 Score = 148 bits (373), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>Q6GGD8:RPOD_STAAR RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain| MRSA252) Length = 368 Score = 148 bits (373), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>P0A0I8:RPOD_STAAM RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain Mu50| / ATCC 700699) Length = 368 Score = 148 bits (373), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>Q5HFJ9:RPOD_STAAC RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain COL)| Length = 368 Score = 148 bits (373), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>P0A0J0:RPOD_STAA8 RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain NCTC| 8325) Length = 368 Score = 148 bits (373), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>O24744:RPOD_SHEVI RNA polymerase sigma factor rpoD - Shewanella violacea| Length = 614 Score = 148 bits (373), Expect = 1e-34 Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 360 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 419 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 420 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 479 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 480 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGE 539 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R E L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 540 SLRNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 599 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 600 RHPSRSEILKSFLD 613
>P57163:RPOD_BUCAI RNA polymerase sigma factor rpoD - Buchnera aphidicola subsp.| Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 612 Score = 148 bits (373), Expect = 1e-34 Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 358 KDINKRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 417 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 418 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREP 477 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + ++ + I +K+ K+ ++P SM+ + +D + ED ++ P Sbjct: 478 TPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSE 537 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 538 SLRSATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 597 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 598 RHPSRSEVLRSFLD 611
>Q99TT5:RPOD_STAAN RNA polymerase sigma factor rpoD - Staphylococcus aureus (strain| N315) Length = 368 Score = 147 bits (372), Expect = 1e-34 Identities = 73/237 (30%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 + ++A +N RLV+ +A++Y G G+ DL+Q+G GL+K EKF+ +KG +F TYA WWI Sbjct: 132 KSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWI 191 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQAI ++I +R IR+P + + K+ + + + + + G P + + + EK+ Sbjct: 192 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVR 251 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ ++P S++ + D + ED SP ++++Q+ + L L+ RE Sbjct: 252 EVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDRE 311 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 312 ENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>P52331:RPOD_LISMO RNA polymerase sigma factor rpoD - Listeria monocytogenes| Length = 374 Score = 147 bits (371), Expect = 2e-34 Identities = 74/235 (31%), Positives = 138/235 (58%), Gaps = 1/235 (0%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 ++A +N RLV+ +A++Y G G+ DL+Q+G GLMK EKF+ +KG +F TYA WWIRQ Sbjct: 140 RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQ 199 Query: 1361 AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKL 1537 AI ++I +R IR+P + + K+ + + + + G P+ + + + EK+ ++ Sbjct: 200 AITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREI 259 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKE 1717 ++P S++ + D + ED + SP ++++Q+ + L L+ RE+ Sbjct: 260 LKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREEN 319 Query: 1718 IVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 320 VLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 374
>Q92BQ6:RPOD_LISIN RNA polymerase sigma factor rpoD - Listeria innocua| Length = 374 Score = 147 bits (371), Expect = 2e-34 Identities = 74/235 (31%), Positives = 138/235 (58%), Gaps = 1/235 (0%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 ++A +N RLV+ +A++Y G G+ DL+Q+G GLMK EKF+ +KG +F TYA WWIRQ Sbjct: 140 RLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQ 199 Query: 1361 AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKL 1537 AI ++I +R IR+P + + K+ + + + + G P+ + + + EK+ ++ Sbjct: 200 AITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREI 259 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKE 1717 ++P S++ + D + ED + SP ++++Q+ + L L+ RE+ Sbjct: 260 LKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREEN 319 Query: 1718 IVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 ++ RFG+ DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 320 VLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 374
>P52324:RPOD_CAUCR RNA polymerase sigma factor rpoD - Caulobacter crescentus| (Caulobacter vibrioides) Length = 652 Score = 147 bits (371), Expect = 2e-34 Identities = 79/240 (32%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 R+ +++M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G +F TYA Sbjct: 412 RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 471 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 WWIRQAI +SI +R IR+P + + K+ + + + E G +PT + +A + + +E Sbjct: 472 WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLE 531 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ K+ ++P S++ + + + ED N P + +R+ L L+ Sbjct: 532 KVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLT 591 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE+ ++ RFGI TL +G + +++ERIRQ++ +AL KLK ++ +LD Sbjct: 592 PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
>P0A2E3:RPOD_SALTY RNA polymerase sigma factor rpoD - Salmonella typhimurium| Length = 615 Score = 147 bits (370), Expect = 2e-34 Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 361 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 420 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 421 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 480 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 481 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 540 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 541 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 600 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 601 RHPSRSEVLRSFLD 614
>P0A2E4:RPOD_SALTI RNA polymerase sigma factor rpoD - Salmonella typhi| Length = 615 Score = 147 bits (370), Expect = 2e-34 Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 361 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 420 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 421 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 480 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 481 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 540 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 541 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 600 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 601 RHPSRSEVLRSFLD 614
>P32001:RPOD_BUCAP RNA polymerase sigma factor rpoD - Buchnera aphidicola subsp.| Schizaphis graminum Length = 617 Score = 147 bits (370), Expect = 2e-34 Identities = 82/254 (32%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG +R +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 363 KDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 422 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 423 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREP 482 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + ++ + I +K+ K+ ++P SM+ + +D + ED ++ P Sbjct: 483 TPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSE 542 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 543 SLRSATHDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 602 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 603 RHPSRSEVLRSFLD 616
>Q59753:RPOD_RHIME RNA polymerase sigma factor rpoD - Rhizobium meliloti (Sinorhizobium| meliloti) Length = 684 Score = 146 bits (369), Expect = 3e-34 Identities = 84/263 (31%), Positives = 141/263 (53%), Gaps = 1/263 (0%) Frame = +2 Query: 1097 TLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGC 1276 ++ E+ + V M +Q R +++M +N RLVI +A+KY GL DL+Q+G Sbjct: 425 SIAEFRRIVSM----VQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 480 Query: 1277 CGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLE 1456 GLMK +KF +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + Sbjct: 481 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ 540 Query: 1457 CILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNID 1633 + E G +PT + +A + + +EK+ K+ ++P S++ V + + ED N Sbjct: 541 MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL 600 Query: 1634 SPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQ 1813 P + +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ Sbjct: 601 LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ 660 Query: 1814 LQNRALDKLKRSVSTQGFDVYLD 1882 ++ +AL KLK ++ +LD Sbjct: 661 IEAKALRKLKHPSRSRKLRSFLD 683
>P00579:RPOD_ECOLI RNA polymerase sigma factor rpoD - Escherichia coli| Length = 613 Score = 146 bits (369), Expect = 3e-34 Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Frame = +2 Query: 1136 KDLQSSIHIG----RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEK 1303 KD+ + IG RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +K Sbjct: 359 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 418 Query: 1304 FNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQP 1480 F +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E G +P Sbjct: 419 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 478 Query: 1481 TNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI 1660 T + +A R + +K+ K+ ++P SM+ + ++ + ED ++ P Sbjct: 479 TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE 538 Query: 1661 MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 +R + L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL Sbjct: 539 SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 598 Query: 1841 KRSVSTQGFDVYLD 1882 + ++ +LD Sbjct: 599 RHPSRSEVLRSFLD 612
>P33452:RPOD_AGRT5 RNA polymerase sigma factor rpoD - Agrobacterium tumefaciens (strain| C58 / ATCC 33970) Length = 684 Score = 146 bits (369), Expect = 3e-34 Identities = 84/263 (31%), Positives = 141/263 (53%), Gaps = 1/263 (0%) Frame = +2 Query: 1097 TLPEWAQAVGMGCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGC 1276 ++ E+ + V M +Q R +++M +N RLVI +A+KY GL DL+Q+G Sbjct: 425 SIAEFRRIVSM----VQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 480 Query: 1277 CGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLE 1456 GLMK +KF +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + Sbjct: 481 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ 540 Query: 1457 CILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNID 1633 + E G +PT + +A + + +EK+ K+ ++P S++ V + + ED N Sbjct: 541 MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL 600 Query: 1634 SPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQ 1813 P + +R+ L L+ RE+ ++ RFGI TL +G + +++ERIRQ Sbjct: 601 LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ 660 Query: 1814 LQNRALDKLKRSVSTQGFDVYLD 1882 ++ +AL KLK ++ +LD Sbjct: 661 IEAKALRKLKHPSRSRKLRSFLD 683
>P52325:RPOD_NEIGO RNA polymerase sigma factor rpoD - Neisseria gonorrhoeae| Length = 642 Score = 146 bits (368), Expect = 4e-34 Identities = 81/250 (32%), Positives = 137/250 (54%), Gaps = 1/250 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 K++ SS + +++M ++N RLVI +A+KY GL DL+Q+G GLMK +KF Sbjct: 387 KNMVSSEKVSAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 446 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQN 1492 +G +F TYA WWIRQAI +SI +R IR+P + + K+ + + + E GE+P + Sbjct: 447 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAK 506 Query: 1493 VARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQ 1672 +A + +K+ K+ ++P SM+ + +D + ED N +P + + Sbjct: 507 LAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHE 566 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 +E L L+ RE +++ RFGI TL +G + +++ERIRQ++ +AL KL+ Sbjct: 567 VTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPT 626 Query: 1853 STQGFDVYLD 1882 + +LD Sbjct: 627 RSDRLRSFLD 636
>P17531:RPOD_MYXXA RNA polymerase sigma factor rpoD - Myxococcus xanthus| Length = 708 Score = 145 bits (367), Expect = 5e-34 Identities = 74/226 (32%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 R + ++ +N RLV+ +A+KY GL DL+Q+G GLMK +KF +G +F TYA W Sbjct: 469 RAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 528 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEK 1525 WIRQAI ++I +R IR+P + + K+ + + E G +PT + +A + + ++K Sbjct: 529 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDK 588 Query: 1526 LAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILST 1705 + K+ ++P S++ + + + ED ++ SP V + + +Q R+ L L+ Sbjct: 589 VRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTP 648 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 RE++++ RFGI + TL +G + +++ERIRQ++ +AL KL+ Sbjct: 649 REEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 694
>P43766:RPOD_HAEIN RNA polymerase sigma factor rpoD - Haemophilus influenzae| Length = 629 Score = 145 bits (367), Expect = 5e-34 Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 RR +++M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G +F TYA Sbjct: 389 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 448 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 WWIRQAI +SI +R IR+P + + K+ + + + E G + T + +A R G+ + Sbjct: 449 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQLLQEMGREATPEELAERMGMPED 508 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ K+ ++P SM+ + +D + ED ++ P ++ E L L+ Sbjct: 509 KIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEVLEGLT 568 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE +++ RFGI TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 569 PREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD 628
>P46400:RPOD_RHOCA RNA polymerase sigma factor rpoD - Rhodobacter capsulatus| (Rhodopseudomonas capsulata) Length = 674 Score = 143 bits (361), Expect = 3e-33 Identities = 78/240 (32%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 R+ +++M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G +F TYA Sbjct: 434 RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 493 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 WWIRQAI +SI +R IR+P + + K+ + + + E G +PT + +A + + +E Sbjct: 494 WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE 553 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 K+ K+ ++P S++ + + + ED N P + +++ L L+ Sbjct: 554 KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLT 613 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 RE+ ++ RFGI TL +G + +++ERIRQ++ +AL KLK ++ +LD Sbjct: 614 PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 673
>Q1RKH7:RPOD_RICBR RNA polymerase sigma factor rpoD - Rickettsia bellii (strain| RML369-C) Length = 641 Score = 142 bits (357), Expect = 8e-33 Identities = 79/242 (32%), Positives = 136/242 (56%), Gaps = 2/242 (0%) Frame = +2 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 +Q S + ++ M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G Sbjct: 378 IQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 437 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVA 1498 +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G +PT +A Sbjct: 438 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIA 497 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTF-QEITEDPNIDSPDLVVDRIMMRQQ 1675 R + I+K+ K+ ++P S+++ V D ++ + ED N +P + +R+ Sbjct: 498 ARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQSNLREV 557 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL KL+ + Sbjct: 558 TTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIR 617 Query: 1856 TQ 1861 ++ Sbjct: 618 SK 619
>Q68VQ5:RPOD_RICTY RNA polymerase sigma factor rpoD - Rickettsia typhi| Length = 635 Score = 140 bits (354), Expect = 2e-32 Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 2/242 (0%) Frame = +2 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 +Q S + ++ M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G Sbjct: 372 IQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 431 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVA 1498 +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G +PT +A Sbjct: 432 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIA 491 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVW-SNDAVTFQEITEDPNIDSPDLVVDRIMMRQQ 1675 R + ++K+ K+ ++P S+++ V +D + ED N +P + +R+ Sbjct: 492 NRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREV 551 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL KL+ + Sbjct: 552 TTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIR 611 Query: 1856 TQ 1861 ++ Sbjct: 612 SK 613
>P33451:RPOD_RICPR RNA polymerase sigma factor rpoD - Rickettsia prowazekii| Length = 635 Score = 140 bits (354), Expect = 2e-32 Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 2/242 (0%) Frame = +2 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 +Q S + ++ M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G Sbjct: 372 IQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 431 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVA 1498 +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G +PT +A Sbjct: 432 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIA 491 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVW-SNDAVTFQEITEDPNIDSPDLVVDRIMMRQQ 1675 R + ++K+ K+ ++P S+++ V +D + ED N +P + +R+ Sbjct: 492 NRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREV 551 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL KL+ + Sbjct: 552 TTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIR 611 Query: 1856 TQ 1861 ++ Sbjct: 612 SK 613
>Q4UJT1:RPOD_RICFE RNA polymerase sigma factor rpoD - Rickettsia felis (Rickettsia| azadi) Length = 635 Score = 140 bits (354), Expect = 2e-32 Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 2/242 (0%) Frame = +2 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 +Q S + ++ M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G Sbjct: 372 IQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 431 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVA 1498 +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G +PT +A Sbjct: 432 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIA 491 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVW-SNDAVTFQEITEDPNIDSPDLVVDRIMMRQQ 1675 R + ++K+ K+ ++P S+++ V +D + ED N +P + +R+ Sbjct: 492 NRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREV 551 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL KL+ + Sbjct: 552 TTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIR 611 Query: 1856 TQ 1861 ++ Sbjct: 612 SK 613
>Q92FZ8:RPOD_RICCN RNA polymerase sigma factor rpoD - Rickettsia conorii| Length = 634 Score = 140 bits (354), Expect = 2e-32 Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 2/242 (0%) Frame = +2 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 +Q S + ++ M +N RLVI +A+KY GL DL+Q+G GLMK +KF +G Sbjct: 371 IQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 430 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVA 1498 +F TYA WWIRQAI ++I +R IR+P + + K+ + + + E G +PT +A Sbjct: 431 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIA 490 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVW-SNDAVTFQEITEDPNIDSPDLVVDRIMMRQQ 1675 R + ++K+ K+ ++P S+++ V +D + ED N +P + +R+ Sbjct: 491 NRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREV 550 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 L L+ RE+ ++ RFGI TL +G + +++ERIRQ++++AL KL+ + Sbjct: 551 TTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIR 610 Query: 1856 TQ 1861 ++ Sbjct: 611 SK 612
>P47491:RPOD_MYCGE RNA polymerase sigma factor rpoD - Mycoplasma genitalium| Length = 497 Score = 138 bits (347), Expect = 1e-31 Identities = 78/232 (33%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 ++ SN RLV+ +A+K+ GLD DL+Q+G GL+K KFN S G +F TYA WWI+Q Sbjct: 249 QLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQ 308 Query: 1361 AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARR-----AGISIE 1522 AI ++I +R +R+P + + ++ KA E G +PT++ +A + G +++ Sbjct: 309 AITRAIADQARTVRIPVHMVETINRLAKAERALYQELGREPTDEELAEKMGGQAEGFNVK 368 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFL-GIL 1699 K+A++K + P S+ V ++ F + +D + +PD + +++ E L L Sbjct: 369 KIAEIKRLSLDPVSLDKTVGHDEESQFGDFVKDTDAQTPDEFTESRSNSEKIDELLNNNL 428 Query: 1700 STREKEIVEHRFGIYD-GEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 S +E+ IV R G+ EPKTL +G + +E+IRQ++N+A+ KL+ +V Sbjct: 429 SEQEELIVRMRIGMPPYNEPKTLDEVGQKILIPREKIRQIENKAIRKLRHAV 480
>P47765:RPOS_YEREN RNA polymerase sigma factor rpoS - Yersinia enterocolitica| Length = 331 Score = 137 bits (345), Expect = 2e-31 Identities = 71/234 (30%), Positives = 128/234 (54%), Gaps = 1/234 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R +M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 92 RRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 151 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP + L + E + +P+ + +A + ++ ++ Sbjct: 152 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 211 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ + S+ + + +I D N + P+ M+Q + ++L L+ ++ Sbjct: 212 RMLRLNERITSVDTPLGGDSEKALLDILSDENENGPEDTTQDDDMKQSIVKWLFELNAKQ 271 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 +E++ RFG+ E TL +G GL++ER+RQ+Q L +L+ + QG + Sbjct: 272 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQAQGLSI 325
>P35540:RPOS_SHIFL RNA polymerase sigma factor rpoS - Shigella flexneri| Length = 330 Score = 136 bits (342), Expect = 4e-31 Identities = 71/234 (30%), Positives = 129/234 (55%), Gaps = 1/234 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R +M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP + L + E + +P+ + +A + ++ ++ Sbjct: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ + S+ + + +I D + P+ M+Q + ++L L+ ++ Sbjct: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 +E++ RFG+ E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>P0A2E5:RPOS_SALTY RNA polymerase sigma factor rpoS - Salmonella typhimurium| Length = 330 Score = 136 bits (342), Expect = 4e-31 Identities = 71/234 (30%), Positives = 129/234 (55%), Gaps = 1/234 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R +M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP + L + E + +P+ + +A + ++ ++ Sbjct: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ + S+ + + +I D + P+ M+Q + ++L L+ ++ Sbjct: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 +E++ RFG+ E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>P0A2E6:RPOS_SALTI RNA polymerase sigma factor rpoS - Salmonella typhi| Length = 330 Score = 136 bits (342), Expect = 4e-31 Identities = 71/234 (30%), Positives = 129/234 (55%), Gaps = 1/234 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R +M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP + L + E + +P+ + +A + ++ ++ Sbjct: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ + S+ + + +I D + P+ M+Q + ++L L+ ++ Sbjct: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 +E++ RFG+ E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>P0A2E7:RPOS_SALDU RNA polymerase sigma factor rpoS - Salmonella dublin| Length = 330 Score = 136 bits (342), Expect = 4e-31 Identities = 71/234 (30%), Positives = 129/234 (55%), Gaps = 1/234 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R +M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP + L + E + +P+ + +A + ++ ++ Sbjct: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ + S+ + + +I D + P+ M+Q + ++L L+ ++ Sbjct: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 +E++ RFG+ E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>P13445:RPOS_ECOLI RNA polymerase sigma factor rpoS - Escherichia coli| Length = 330 Score = 136 bits (342), Expect = 4e-31 Identities = 71/234 (30%), Positives = 129/234 (55%), Gaps = 1/234 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R +M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP + L + E + +P+ + +A + ++ ++ Sbjct: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 Query: 1532 KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 ++ + S+ + + +I D + P+ M+Q + ++L L+ ++ Sbjct: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 +E++ RFG+ E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>O51804:RPOS_VIBCH RNA polymerase sigma factor rpoS - Vibrio cholerae| Length = 335 Score = 134 bits (338), Expect = 1e-30 Identities = 72/239 (30%), Positives = 129/239 (53%), Gaps = 6/239 (2%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R++M SN RLV+ ++R+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 92 RKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 151 Query: 1355 RQAIKKSIFKHSRLIRLP------ESVYARLKKVGKARLECILEGEQPTNQNVARRAGIS 1516 RQ I++++ +R IRLP ++Y R + RL+ +PT + +A Sbjct: 152 RQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLD-----HEPTPEEIALELDRP 206 Query: 1517 IEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGI 1696 ++ + K+ + S+ + + +I D + P+ +R+ + +L Sbjct: 207 VDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDE 266 Query: 1697 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 1873 L+ ++KE++ RFG+ EP TL +G L++ER+RQ+Q L +L+ + QG ++ Sbjct: 267 LNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNM 325
>P45684:RPOS_PSEAE RNA polymerase sigma factor rpoS - Pseudomonas aeruginosa| Length = 334 Score = 132 bits (331), Expect = 8e-30 Identities = 74/232 (31%), Positives = 129/232 (55%), Gaps = 2/232 (0%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R++M SN RLV+ +AR+Y GL + DL+++G GL++ EKF+P +G RF TYA WWI Sbjct: 96 RKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 155 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 RQ I+++I +R IRLP V L +A E + +P+ + +A + ++ Sbjct: 156 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVK 215 Query: 1532 KLKAKTRKPRSMQDQVW-SNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTR 1708 ++ + S+ + +D +T+D D +L+ D + + + ++L L+ + Sbjct: 216 RMLGLNERVTSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDD-DLSESIDQWLTELTDK 274 Query: 1709 EKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQG 1864 ++E+V RFG+ E TL +G GL++ER+RQ+Q AL +L+ + G Sbjct: 275 QREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLREILEKNG 326
>P78022:RPOD_MYCPN RNA polymerase sigma factor rpoD - Mycoplasma pneumoniae| Length = 499 Score = 129 bits (323), Expect = 7e-29 Identities = 75/232 (32%), Positives = 129/232 (55%), Gaps = 8/232 (3%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 ++ SN RLV+ +A+K+ GLD DL+Q+G GL+K KFN S G +F TYA WWI+Q Sbjct: 251 QLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQ 310 Query: 1361 AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARR-----AGISIE 1522 AI ++I +R +R+P + + ++ KA E G +PT + +A + G +++ Sbjct: 311 AITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMGGQAEGFTVK 370 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFL-GIL 1699 K+A++K + P S+ V ++ F + D + PD + +++ E L L Sbjct: 371 KIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNYEKIDELLNNCL 430 Query: 1700 STREKEIVEHRFGIYD-GEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 S +E+ IV R G+ E KTL + + +E+IRQ++ +A+ KL+++V Sbjct: 431 SEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLRQAV 482
>P43344:RPOD_SERMA RNA polymerase sigma factor rpoD - Serratia marcescens| Length = 215 Score = 119 bits (299), Expect = 4e-26 Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 1/214 (0%) Frame = +2 Query: 1244 LDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYA 1423 L DL+Q+G GLMK +KF +G +F TYA WWIRQAI +SI +R IR+P + Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 1424 RLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVT 1600 + K+ + + + E G +PT + +A R + +K+ K+ ++P SM+ + ++ Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 1601 FQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGD 1780 + ED ++ P +R + L L+ RE +++ RFGI TL +G Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 1781 MYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 1882 + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 181 QFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 214
>Q07083:RPSC_MYXXA RNA polymerase sigma-C factor - Myxococcus xanthus| Length = 295 Score = 117 bits (293), Expect = 2e-25 Identities = 83/254 (32%), Positives = 128/254 (50%), Gaps = 15/254 (5%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 ++ +N R V+ VA +Y+ YGL + DL+Q+ GLMK +KF+P KG R +YA WWIR Sbjct: 48 QLVTANLRFVVKVAYEYRSYGLKMSDLIQEANIGLMKAVQKFDPDKGIRLISYAVWWIRA 107 Query: 1361 AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLA-KL 1537 I+ I K+ L++L + R AR LE + NV ++ E++A KL Sbjct: 108 YIQNCILKNWSLVKLGTTQAQRRLFFSLARTRRELEKMGAGDANV-----VNAEEIARKL 162 Query: 1538 KAKTRKPRSMQDQVWSNDA-----------VTFQEITEDPNIDSPDLVVDR---IMMRQQ 1675 K + R M+ ++ D T + E ++ + D V DR + R+ Sbjct: 163 NVKASEVREMEQRMGGRDLSLDAPMGEDGDATHLDFVESESVSAVDEVADRQQANLTREL 222 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 V+ L L RE+ I+E R + TL +G+ +G S+ER RQL+ RA DKLK ++ Sbjct: 223 VQRALRRLDPRERFIIEQR--VMGDAEMTLSELGEHFGFSRERARQLEIRAKDKLKLALV 280 Query: 1856 TQGFDVYLDLLTSN 1897 T + +D T N Sbjct: 281 TLMAEAGVDESTLN 294
>Q01624:RPSB_STIAU RNA polymerase sigma-B factor - Stigmatella aurantiaca| Length = 296 Score = 110 bits (275), Expect = 2e-23 Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 15/240 (6%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 ++ SN R V+ V+ +Y+ YG+ + DL+Q+G GLMK +KF+P KG R +YA WWIR Sbjct: 49 RLVTSNLRFVVKVSYEYRSYGIKMSDLIQEGNIGLMKAVQKFDPDKGIRLISYAVWWIRA 108 Query: 1361 AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLA-KL 1537 I+ I K L++L + R AR LE A ++++++A KL Sbjct: 109 YIQNYILKSWSLVKLGTTQAQRKLFFSLARTRRELE-----KFGAGDGAVVNVDEIANKL 163 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI--------------MMRQQ 1675 K + R M+ ++ D + ED D V ++ + Sbjct: 164 NVKASEVREMEQRMGGRDLSLDAPMGEDGGNSHVDFVASAAAPQDDEFADKEEAGLINSR 223 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 V L L RE+ I+E R + + P TL +G+ +G S+ER RQL+ RA DKLK ++ Sbjct: 224 VHMALMRLDPRERFIIEQR--VMNERPMTLKELGEHFGFSRERARQLEIRAKDKLKAELA 281
>P50512:RP32_ZYMMO RNA polymerase sigma-32 factor - Zymomonas mobilis| Length = 302 Score = 110 bits (275), Expect = 2e-23 Identities = 70/251 (27%), Positives = 133/251 (52%), Gaps = 19/251 (7%) Frame = +2 Query: 1157 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 1336 H + ++ S+ RLV +A Y+GYGL + +L+ +G GLM+ +KF+P +G R T Sbjct: 48 HQDPKAASRLVTSHLRLVAKIAMGYRGYGLPVSELISEGNIGLMQGVKKFDPERGFRLAT 107 Query: 1337 YAYWWIRQAIKKSIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQ--NV 1495 YA WWI+ +I++ I + L+++ + ++ L+++ K+ + +G+ ++ ++ Sbjct: 108 YAIWWIKASIQEYILRSWSLVKMGTTAAQKKLFFNLRRL-KSNMNAFEDGDLKPDEVDSI 166 Query: 1496 ARRAGISIEKL------------AKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSP 1639 A G+S E++ + L R+ Q Q W D QE +D I+ Sbjct: 167 ATNLGVSNEEVVNMNRRMAMGGDSSLNITMREDGEGQMQDWLVD----QEPLQDQQIEEE 222 Query: 1640 DLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQ 1819 + + ++ + + E + L+ REK I+ R PKTL + +YG+S+ER+RQ++ Sbjct: 223 E---ESLVRHKLLIEAMDKLNDREKHILTER--RLSDNPKTLEELSQVYGVSRERVRQIE 277 Query: 1820 NRALDKLKRSV 1852 RA DKL++++ Sbjct: 278 VRAFDKLQKAI 288
>P19433:RPSB_MYXXA RNA polymerase sigma-B factor - Myxococcus xanthus| Length = 246 Score = 108 bits (269), Expect = 1e-22 Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Frame = +2 Query: 1184 MARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQA 1363 M +N R V+ VA +Y+ YG+ + DL+Q+G GLMK +KF+P KG R +YA WWIR Sbjct: 1 MVTANLRFVVKVAYEYRSYGIKMSDLIQEGNIGLMKAVQKFDPDKGIRLISYAVWWIRAY 60 Query: 1364 IKKSIFKHSRLIRLPES-----VYARLKKVGKARLECILEGEQPTN-QNVARRAGISIEK 1525 I+ I K L++L + ++ L + + LE G+ N ++ARR Sbjct: 61 IQNYILKSWSLVKLGTTQAHGKLFFSLART-RRELEKFGSGDAAVNVDDIARR------- 112 Query: 1526 LAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI--------------M 1663 L K + R M+ ++ D + ED D VV + Sbjct: 113 ---LHVKPGEVREMEQRMGGRDLSLDAPMGEDGGNSHVDFVVSAAAPQDDEFADKEEAGL 169 Query: 1664 MRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 + +VR L L RE I+E R + + P TL +G+ +G S+ER RQL+ RA DKLK Sbjct: 170 INARVRAALMRLDPREPFIIEQR--VMNERPMTLKELGEHFGFSRERARQLEIRAKDKLK 227 Query: 1844 RSVS 1855 ++ Sbjct: 228 SELA 231
>P50507:RP32_AGRTU RNA polymerase sigma-32 factor - Agrobacterium tumefaciens| Length = 300 Score = 107 bits (268), Expect = 2e-22 Identities = 71/254 (27%), Positives = 134/254 (52%), Gaps = 16/254 (6%) Frame = +2 Query: 1157 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 1336 H R K+ S+ RLV +A Y+GYGL I ++V +G GLM+ +KF+P +G R T Sbjct: 44 HGDRDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLAT 103 Query: 1337 YAYWWIRQAIKKSIFKHSRLIRL-----PESVYARLKKVGKARLECILEGE-QPTN-QNV 1495 YA WWI+ +I++ I + L+++ + ++ L+++ K R++ I +G+ +P + + + Sbjct: 104 YAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRRL-KGRIQAIDDGDLKPEHVKEI 162 Query: 1496 ARRAGISIEKLAKLKAKTRKPRSMQDQV---------WSNDAVTFQEITEDPNIDSPDLV 1648 A + +S E++ + + S+ + W + V E E I+ +L Sbjct: 163 ATKLQVSEEEVISMNRRLHGDASLNAPIKASEGESGQWQDWLVDDHESQEAVLIEQDELE 222 Query: 1649 VDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRA 1828 R M+ + +G+L+ RE+ I E R D P TL + + +S+ER+RQ++ RA Sbjct: 223 TRRRMLAKA----MGVLNDRERRIFEARRLAED--PVTLEELSSEFDISRERVRQIEVRA 276 Query: 1829 LDKLKRSVSTQGFD 1870 +K++ +V + + Sbjct: 277 FEKVQEAVQKEALE 290
>P48194:RP32_CAUCR RNA polymerase sigma-32 factor - Caulobacter crescentus (Caulobacter| vibrioides) Length = 295 Score = 107 bits (266), Expect = 3e-22 Identities = 65/247 (26%), Positives = 129/247 (52%), Gaps = 15/247 (6%) Frame = +2 Query: 1157 HIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPT 1336 H + KM S+ RLV +A Y+GYGL I +++ +G GLM+ +KF P KG R T Sbjct: 43 HQDPQAAHKMVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPEKGFRLAT 102 Query: 1337 YAYWWIRQAIKKSIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQ--NV 1495 YA WWIR +I++ I + L+++ + ++ L+K K+++ EG+ +Q + Sbjct: 103 YAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRK-AKSQIAAFQEGDLHPDQVSQI 161 Query: 1496 ARRAGISIEKLAKLKAKTRKP--------RSMQDQVWSNDAVTFQEITEDPNIDSPDLVV 1651 A + G+ ++ + + P R+ + W + ++++++ + + Sbjct: 162 ATKLGVLDSEVISMNRRLSGPDASLNAPLRADGESEWQDWLADEEQVSQETRVAEDE--- 218 Query: 1652 DRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRAL 1831 ++ + + E + L+ RE+ I+ R +P TL + YG+S+ER+RQ++ RA Sbjct: 219 EKSLRMSLLEEAMVELTDRERHILTER--RLKDDPTTLEELAAQYGVSRERVRQIEVRAF 276 Query: 1832 DKLKRSV 1852 +KL++++ Sbjct: 277 EKLQKTM 283
>Q8DD54:RP32_VIBVU RNA polymerase sigma-32 factor - Vibrio vulnificus| Length = 285 Score = 102 bits (255), Expect = 5e-21 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 15/235 (6%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R V+HVAR Y GYGL + DLVQ+G GLMK ++FNP G R ++A WI+ I + Sbjct: 56 SHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL GE T VAR G+ ++ ++ Sbjct: 116 YVLRNWRIVKIATTKAQRKLFFNLRK-SKKRLGWFNNGEVET---VARELGVEPAEVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEITEDPNI---DSPDLVVDRIMMR-------QQVREF 1687 +++ S D N+ ++ P + D V D + + ++ Sbjct: 172 ESRLAAVDSTFD--LPNEEDDSSSVSTAPVLYLEDKSSDVADNLEAQNWEAHTNNRLAMA 229 Query: 1688 LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L L R + IV R+ D + TL + +MYG+S ERIRQL+ A+ KLK +V Sbjct: 230 LASLDERSQHIVRSRW--LDDDKATLQDLAEMYGVSAERIRQLEKNAMKKLKMAV 282
>P50511:RP32_VIBCH RNA polymerase sigma-32 factor - Vibrio cholerae| Length = 286 Score = 102 bits (255), Expect = 5e-21 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 13/233 (5%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R V+HVAR Y GYGL + DLVQ+G GLMK ++FNP G R ++A WI+ I + Sbjct: 56 SHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL GE T VAR G+ ++ ++ Sbjct: 116 YVLRNWRIVKIATTKAQRKLFFNLRK-SKKRLGWFNNGEVET---VARELGVEPAEVREM 171 Query: 1538 KAKTRKPRSMQDQVWSND--------AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLG 1693 +++ + + +D V + E D+ + Q++ L Sbjct: 172 ESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALA 231 Query: 1694 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L R + IV R+ + D TL + +MYG+S ERIRQL+ A+ KLK +V Sbjct: 232 SLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283
>P44404:RP32_HAEIN RNA polymerase sigma-32 factor - Haemophilus influenzae| Length = 281 Score = 98.6 bits (244), Expect = 1e-19 Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 22/248 (8%) Frame = +2 Query: 1178 EKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIR 1357 +K+ S+ R VIHVAR Y GYGL DL+Q+G GLMK ++FNP G R ++A WI+ Sbjct: 50 KKLILSHLRFVIHVARGYSGYGLPQADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIK 109 Query: 1358 QAIKKSIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIE 1522 I + + ++ R++++ ++ L+K K RL E E VA G+S E Sbjct: 110 AEIHEYVLRNWRIVKVATTKAQRKLFFNLRKT-KQRLGWFNENEV---DMVANELGVSKE 165 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNID--SPDLVVD-------------- 1654 + +++++ S V F T+D + SP L ++ Sbjct: 166 DVIEMESR-----------MSGADVGFDLPTDDAETETYSPALYLEDKSSNFAAELENEN 214 Query: 1655 -RIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRAL 1831 +Q+ L L R ++I++ R+ D TLH + Y +S ERIRQL+ AL Sbjct: 215 FESQATEQLGAALQSLDARSQDIIKARW--LDDNKATLHDLAAKYNVSAERIRQLETNAL 272 Query: 1832 DKLKRSVS 1855 KLK +V+ Sbjct: 273 KKLKSAVN 280
>P50508:RP32_ENTCL RNA polymerase sigma-32 factor - Enterobacter cloacae| Length = 285 Score = 96.3 bits (238), Expect = 5e-19 Identities = 70/263 (26%), Positives = 125/263 (47%), Gaps = 15/263 (5%) Frame = +2 Query: 1109 WAQAVGMGCKDLQSSIHI--GRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCG 1282 W K+L +H + + S+ R V+HVAR Y GYGL DL+Q+G G Sbjct: 26 WPMLTAEEEKELAEKLHYQGDLEAAKTLILSHLRFVVHVARNYAGYGLPQADLIQEGNIG 85 Query: 1283 LMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRL-----PESVYARLKKVGKA 1447 LMK +FNP G R ++A WI+ I + + ++ R++++ ++ L+K K Sbjct: 86 LMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKT-KQ 144 Query: 1448 RLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEIT---- 1615 RL + E + VAR G+S + + +++++ D +DA Q + Sbjct: 145 RLGWFNQDEV---EMVARELGVSSKDVREMESRMAAQDMTFDMSADDDASDSQPMAPVLY 201 Query: 1616 -EDPNIDSPDLVVDRIMMRQQVREF---LGILSTREKEIVEHRFGIYDGEPKTLHVIGDM 1783 +D + D + + Q + + L R ++I+ R+ + + TL + D Sbjct: 202 LQDKTSNFADGIEEDNWEDQAANKLTFAMEGLDERSQDIIRARW-LDEDNKSTLQELADR 260 Query: 1784 YGLSKERIRQLQNRALDKLKRSV 1852 YG+S ER+RQL+ A+ KL+ ++ Sbjct: 261 YGVSAERVRQLEKNAMKKLRAAI 283
>P50510:RP32_SERMA RNA polymerase sigma-32 factor - Serratia marcescens| Length = 285 Score = 94.4 bits (233), Expect = 2e-18 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 21/246 (8%) Frame = +2 Query: 1178 EKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIR 1357 +++ S+ R V H+AR Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ Sbjct: 51 KQLILSHLRFVAHIARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIK 110 Query: 1358 QAIKKSIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIE 1522 I + + ++ R++++ ++ L+K K RL + E + VAR G++ + Sbjct: 111 AEIHEYVLRNWRIVKVATTKAQRKLFFNLRKT-KQRLGWFNQDEV---ELVARELGVTSK 166 Query: 1523 KLAKLKAK---------------TRKPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVD 1654 + +++++ R +SM ++ D + F E E+ N +S D Sbjct: 167 DVREMESRMAAQDMTFDPTPDDEARDGQSMAPVLYLQDKSSDFAEGIEEDNWESN--AAD 224 Query: 1655 RIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALD 1834 ++ L L R + I+ R+ + D TL + D YG+S ER+RQL+ A+ Sbjct: 225 KLAYA------LEGLDERSQHIIRARW-LDDDNKSTLQELADQYGVSAERVRQLEKNAMK 277 Query: 1835 KLKRSV 1852 KLK ++ Sbjct: 278 KLKMAI 283
>P0AGB3:RP32_ECOLI RNA polymerase sigma-32 factor - Escherichia coli| Length = 284 Score = 94.4 bits (233), Expect = 2e-18 Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R V+H+AR Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 56 SHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL + E + VAR G++ + + ++ Sbjct: 116 YVLRNWRIVKVATTKAQRKLFFNLRKT-KQRLGWFNQDEV---EMVARELGVTSKDVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEIT-----EDPNIDSPDLVVDRIMMRQ---QVREFLG 1693 +++ + M + S+D Q + +D + + D + D Q ++ + + Sbjct: 172 ESR-MAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQ 230 Query: 1694 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 231 GLDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>P0AGB4:RP32_ECOL6 RNA polymerase sigma-32 factor - Escherichia coli O6| Length = 284 Score = 94.4 bits (233), Expect = 2e-18 Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R V+H+AR Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 56 SHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL + E + VAR G++ + + ++ Sbjct: 116 YVLRNWRIVKVATTKAQRKLFFNLRKT-KQRLGWFNQDEV---EMVARELGVTSKDVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEIT-----EDPNIDSPDLVVDRIMMRQ---QVREFLG 1693 +++ + M + S+D Q + +D + + D + D Q ++ + + Sbjct: 172 ESR-MAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQ 230 Query: 1694 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 231 GLDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>P0AGB5:RP32_ECO57 RNA polymerase sigma-32 factor - Escherichia coli O157:H7| Length = 284 Score = 94.4 bits (233), Expect = 2e-18 Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R V+H+AR Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 56 SHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL + E + VAR G++ + + ++ Sbjct: 116 YVLRNWRIVKVATTKAQRKLFFNLRKT-KQRLGWFNQDEV---EMVARELGVTSKDVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEIT-----EDPNIDSPDLVVDRIMMRQ---QVREFLG 1693 +++ + M + S+D Q + +D + + D + D Q ++ + + Sbjct: 172 ESR-MAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQ 230 Query: 1694 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 231 GLDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>P50509:RP32_PROMI RNA polymerase sigma-32 factor - Proteus mirabilis| Length = 284 Score = 94.0 bits (232), Expect = 2e-18 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 22/242 (9%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R VIHVAR Y GYGL DL+Q+G GLMK FNP G R ++A WI+ I + Sbjct: 56 SHLRFVIHVARSYSGYGLPQADLIQEGNIGLMKAVRHFNPEVGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL + E + VA+ G+S + ++ Sbjct: 116 YVLRNWRIVKVATTKSQRKLFFNLRK-NKKRLGWFNQDEV---ELVAKELGVSESDVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQE--------ITEDPNIDSPDLV---------VDRIMM 1666 +++ S QD + A + ED + D D + DR+ + Sbjct: 172 ESR----MSAQDMAFDMSADDSDDPHPVAPVLFLEDKSSDFADGIEEDNWDNHAADRLTL 227 Query: 1667 RQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 + L R ++I+ R+ + D TL + D YG+S ER+RQL+ A+ KL+ Sbjct: 228 A------IKTLDERSQDIIRARW-LEDDNKSTLQELADKYGVSAERVRQLEKNAMKKLRL 280 Query: 1847 SV 1852 ++ Sbjct: 281 AI 282
>P11539:RP32_CITFR RNA polymerase sigma-32 factor - Citrobacter freundii| Length = 284 Score = 93.2 bits (230), Expect = 4e-18 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 13/233 (5%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R V+HVAR Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 56 SHLRFVVHVARNYAGYGLRQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL + E + VAR G+S + + ++ Sbjct: 116 YVLRNWRIVKVATTKAQRKLFFNLRKT-KQRLGWFNQDEV---EMVARELGVSSKDVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEIT-----EDPNIDSPDLVVDRIMMRQQVREF---LG 1693 +++ + M + S+D Q + +D + + D + + Q + + Sbjct: 172 ESR-MAAQDMTFDMSSDDESDSQPMAPVLYLQDKSSNFADGIEEDNWEDQAANKLTHAME 230 Query: 1694 ILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 231 GLDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>P42378:RP32_PSEAE RNA polymerase sigma-32 factor - Pseudomonas aeruginosa| Length = 284 Score = 92.0 bits (227), Expect = 9e-18 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 11/232 (4%) Frame = +2 Query: 1181 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 1360 +M ++ R V+H+A+ Y GYGL DL+Q+G GLMK ++FNP G R ++A WI+ Sbjct: 53 QMVLAHLRFVVHIAKSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKA 112 Query: 1361 AIKKSIFKHSRLIRLPESVYARL----KKVGKARLECILEGEQPTNQNVARRAGISIEKL 1528 I + I ++ R++++ + R + K RL + E VA G+ ++ Sbjct: 113 EIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEV---HRVAESLGVEPREV 169 Query: 1529 AKLKAK-TRKPRSMQDQVWSNDAVTFQ---EITEDPNIDSPDLVVD---RIMMRQQVREF 1687 +++++ T + + ++D +Q ED D + D + E Sbjct: 170 REMESRLTGQDMAFDPAADADDESAYQSPAHYLEDHRYDPARQLEDADWSDSSSANLHEA 229 Query: 1688 LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 L L R ++I++ R+ E TLH + + Y +S ERIRQL+ A+ KLK Sbjct: 230 LEGLDERSRDILQQRW--LSEEKATLHDLAEKYNVSAERIRQLEKNAMSKLK 279
>Q89B27:RP32_BUCBP RNA polymerase sigma-32 factor - Buchnera aphidicola subsp. Baizongia| pistaciae Length = 287 Score = 89.0 bits (219), Expect = 8e-17 Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 17/239 (7%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R VIHV+R Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 57 SHLRFVIHVSRNYSGYGLLQADLIQEGNIGLMKAVRRFNPKIGVRLVSFAVHWIKSEIHE 116 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL + E + VA+ G+ E + ++ Sbjct: 117 YVLRNWRIVKVATTKSQRKLFFNLRKT-KQRLGWFNDHEL---ELVAQELGVKREDVREM 172 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQE---------ITEDPNIDSPDLVVD---RIMMRQQVR 1681 +++ S QD + F+E +D D + V + ++ Sbjct: 173 ESR----MSAQDIALHHVPDNFREEQNFSYTIPYLKDSLSDFANHVEEDNWEAHKTNKLS 228 Query: 1682 EFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 1858 L L R + I+ R+ TL I YG+S ER+RQL+ A+ KLK ++ T Sbjct: 229 NALSSLDERSRNIIHARWLDDSDHKMTLREIAHNYGISAERVRQLEKNAMKKLKVAIET 287
>Q8KA76:RP32_BUCAP RNA polymerase sigma-32 factor - Buchnera aphidicola subsp.| Schizaphis graminum Length = 285 Score = 88.2 bits (217), Expect = 1e-16 Identities = 69/245 (28%), Positives = 117/245 (47%), Gaps = 25/245 (10%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R VIH++R Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 56 SHLRFVIHISRNYSGYGLLQADLIQEGNIGLMKAVRRFNPDIGVRLVSFAVHWIKSEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL Q + VAR G+S E + ++ Sbjct: 116 YVLRNWRIVKVATTKSQRKLFFNLRK-NKKRLGWF---NQEEIEIVARELGVSSEDVREM 171 Query: 1538 KAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREF---------- 1687 +++ S QD +TF E+ ++ + + ++ + F Sbjct: 172 ESR----MSAQD-------ITFNPFPEE-DLKDGKINGNMFYLQDKTSNFANGLEQDNWN 219 Query: 1688 ----------LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDK 1837 L L R + I+ R+ + E TL I + YG+S ER+RQL+ A+ K Sbjct: 220 KHTTSKLSNALLRLDERSRNIIRARW-LDKKEKNTLQKIANNYGISAERVRQLEKNAMKK 278 Query: 1838 LKRSV 1852 LK ++ Sbjct: 279 LKIAI 283
>O05385:RP32_BUCAI RNA polymerase sigma-32 factor - Buchnera aphidicola subsp.| Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 284 Score = 87.8 bits (216), Expect = 2e-16 Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 14/234 (5%) Frame = +2 Query: 1193 SNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKK 1372 S+ R VIH++R Y GYGL DL+Q+G GLMK +FNP G R ++A WI+ I + Sbjct: 56 SHLRFVIHISRNYSGYGLLQSDLIQEGNIGLMKAVRRFNPEIGVRLVSFAVHWIKSEIHE 115 Query: 1373 SIFKHSRLIRL-----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKL 1537 + ++ R++++ ++ L+K K RL E E Q VAR G+S + ++ Sbjct: 116 YVLRNWRIVKVATTKSQRKLFFNLRKT-KKRLGWFNEEE---IQIVARELGVSSRDVREM 171 Query: 1538 KAK--------TRKPRSMQDQVWSNDAVTFQEITED-PNIDSPDLVVDRIMMRQQVREFL 1690 +++ P D ++ Q+ T + N D + ++ L Sbjct: 172 ESRMSAQDVAFNPSPEEHCDSKTNSSIQYLQDKTSNFANGVEQDNWEEH--AANKLSSAL 229 Query: 1691 GILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 L R + I+ R+ + + TL I + YG+S ER+RQL+ A+ KLK ++ Sbjct: 230 LRLDERSRHIIHARW-LDKNKKNTLQNIANNYGISAERVRQLEKNAMKKLKLAI 282
>P26764:RPSF_BACLI RNA polymerase sigma-F factor - Bacillus licheniformis| Length = 255 Score = 84.7 bits (208), Expect = 1e-15 Identities = 65/240 (27%), Positives = 122/240 (50%), Gaps = 3/240 (1%) Frame = +2 Query: 1142 LQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKG 1321 +++S + ++ R+ + N RLV V +++ G + +DL Q GC GL+K+ +KF+ S Sbjct: 23 IKNSQNGDQKARDLLIEKNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSYD 82 Query: 1322 CRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECI-LEGEQPTNQNVA 1498 RF TYA I I++ I + +++ S+ K+ +A+ E G PT Q +A Sbjct: 83 VRFSTYAVPMIIGEIQRFI-RDDGTVKVSRSLKELGNKIRRAKEELSKSNGRIPTVQEIA 141 Query: 1499 RRAGISIEKLAKLKAKTRKPRSMQDQVWSNDA--VTFQEITEDPNIDSPDLVVDRIMMRQ 1672 IS E++ + R P S+ + V+ ND +T + D S + D+I +++ Sbjct: 142 DYLEISSEEVVMAQEAVRSPSSIHETVYENDGDPITLLDQIAD---QSEEKWFDKIALKE 198 Query: 1673 QVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 +++ L REK IV R+ + KT + D G+S+ ++ +L+ + L ++K + Sbjct: 199 AIKD----LDEREKLIVYLRY----YKDKTQSEVADRLGISQVQVSRLEKKILKQIKNQM 250
>P33658:RPSG_CLOAB RNA polymerase sigma-G factor - Clostridium acetobutylicum| Length = 257 Score = 82.8 bits (203), Expect = 5e-15 Identities = 62/230 (26%), Positives = 118/230 (51%), Gaps = 4/230 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 REK + N RLV+ V +++ G + +DL Q GC GL+K+ + F+ S+ +F TYA I Sbjct: 39 REKFIKGNLRLVLSVIQRFNNRGENADDLFQVGCIGLIKSIDNFDLSQNVKFSTYAVPMI 98 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 I++ + + + IR+ S+ + + R I + ++PT +A+ I E++ Sbjct: 99 IGEIRRYL-RDNNSIRVSRSLRDIAYRALQVRDRLISKNNKEPTVSQIAKELKIPREEVI 157 Query: 1532 KLKAKTRKPRSMQDQVWSNDA---VTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 + P S+ + ++ +D +I+++ N+D D + ++E + LS Sbjct: 158 FALDAIQDPISLFEPIYHDDGDAIYVMDQISDNKNLD------DSWLQNISIKEAMKKLS 211 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 REK I+ RF +DG +T + D G+S+ ++ +L+ AL +K+ V Sbjct: 212 DREKMILNMRF--FDG--RTQMEVADEIGISQAQVSRLEKTALKHMKKYV 257
>P62179:RP35_BACTK RNA polymerase sigma-35 factor precursor - Bacillus thuringiensis| subsp. kurstaki Length = 239 Score = 81.3 bits (199), Expect = 2e-14 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 3/227 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R + N RLV+++ARK++ G++IEDL+ G GL+K FNP K + TYA Sbjct: 59 RSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYA---- 114 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAK 1534 + I+ I H L++ K R E + ++P N + Sbjct: 115 SRCIENEILMH-------------LRRNNKNRSE--VSFDEPLNID-------------- 145 Query: 1535 LKAKTRKPRSMQDQVWSNDAVTFQEIT-EDPNIDSPDL--VVDRIMMRQQVREFLGILST 1705 W + + ++ D +I + DL VDR ++ + + + L+ Sbjct: 146 ---------------WDGNELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LND 186 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 REK+I+E RFG+ GE KT + DM G+S+ I +L+ R + +L++ Sbjct: 187 REKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRK 233
>P62178:RP35_BACCR RNA polymerase sigma-35 factor precursor - Bacillus cereus (strain| ATCC 14579 / DSM 31) Length = 239 Score = 81.3 bits (199), Expect = 2e-14 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 3/227 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R + N RLV+++ARK++ G++IEDL+ G GL+K FNP K + TYA Sbjct: 59 RSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYA---- 114 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAK 1534 + I+ I H L++ K R E + ++P N + Sbjct: 115 SRCIENEILMH-------------LRRNNKNRSE--VSFDEPLNID-------------- 145 Query: 1535 LKAKTRKPRSMQDQVWSNDAVTFQEIT-EDPNIDSPDL--VVDRIMMRQQVREFLGILST 1705 W + + ++ D +I + DL VDR ++ + + + L+ Sbjct: 146 ---------------WDGNELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LND 186 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 REK+I+E RFG+ GE KT + DM G+S+ I +L+ R + +L++ Sbjct: 187 REKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRK 233
>P62177:RP35_BACAN RNA polymerase sigma-35 factor precursor - Bacillus anthracis| Length = 239 Score = 81.3 bits (199), Expect = 2e-14 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 3/227 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R + N RLV+++ARK++ G++IEDL+ G GL+K FNP K + TYA Sbjct: 59 RSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYA---- 114 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAK 1534 + I+ I H L++ K R E + ++P N + Sbjct: 115 SRCIENEILMH-------------LRRNNKNRSE--VSFDEPLNID-------------- 145 Query: 1535 LKAKTRKPRSMQDQVWSNDAVTFQEIT-EDPNIDSPDL--VVDRIMMRQQVREFLGILST 1705 W + + ++ D +I + DL VDR ++ + + + L+ Sbjct: 146 ---------------WDGNELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LND 186 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 REK+I+E RFG+ GE KT + DM G+S+ I +L+ R + +L++ Sbjct: 187 REKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRK 233
>P19940:RPSG_BACSU RNA polymerase sigma-G factor - Bacillus subtilis| Length = 260 Score = 79.3 bits (194), Expect = 6e-14 Identities = 58/230 (25%), Positives = 121/230 (52%), Gaps = 4/230 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 REK+ N RLV+ V +++ G ++DL Q GC GLMK+ + F+ S +F TYA I Sbjct: 40 REKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDLSHNVKFSTYAVPMI 99 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLA 1531 I++ + + + IR+ S+ K + R I E ++PT +++A+ + E++ Sbjct: 100 IGEIRRYL-RDNNPIRVSRSLRDIAYKALQVRERLISETSKEPTAEDIAKVLEVPHEEIV 158 Query: 1532 KLKAKTRKPRSMQDQVWSNDA---VTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 + P S+ + ++++ +I+++ N DS ++ + +++ +R L+ Sbjct: 159 FALDAIQDPVSLFEPIYNDGGDPIYVMDQISDERNTDSQ--WIEELALKEGMRR----LN 212 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 REK I+ RF + G KT + + G+S+ ++ +L+ A+ ++ +++ Sbjct: 213 DREKMILRKRF--FQG--KTQMEVAEEIGISQAQVSRLEKAAIKQMNKNI 258
>P12254:RPSK_BACSU RNA polymerase sigma-K factor precursor - Bacillus subtilis| Length = 294 Score = 76.3 bits (186), Expect = 5e-13 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 15/237 (6%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R + N RLV H+ +K++ G D EDL+ G GL+K E ++ KG + TYA I Sbjct: 52 RNMLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKGIESYSAGKGTKLATYAARCI 111 Query: 1355 RQ--AIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTN-----QNVARRAGI 1513 I K H LIR ++Y G ++ N +++ + Sbjct: 112 ENEIVITKGGCIHPSLIRF--NIYGVRIHNGN------FFHDKVNNCFFIFKSMPPLFVM 163 Query: 1514 SIEKLAKLKA--KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMR--- 1669 + E L L+A KT+K S+ D + + + ++ ++ + N D V+D I + Sbjct: 164 NNEILMHLRALKKTKKDVSLHDPIGQDKEGNEISLIDVLKSENED----VIDTIQLNMEL 219 Query: 1670 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 ++V++++ IL REKE++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 220 EKVKQYIDILDDREKEVIVGRFGLDLKKEKTQREIAKELGISRSYVSRIEKRALMKM 276
>P07860:RPSF_BACSU RNA polymerase sigma-F factor - Bacillus subtilis| Length = 255 Score = 76.3 bits (186), Expect = 5e-13 Identities = 60/229 (26%), Positives = 114/229 (49%), Gaps = 3/229 (1%) Frame = +2 Query: 1166 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAY 1345 ++ R+ + N RLV V +++ G + +DL Q GC GL+K+ +KF+ + RF TYA Sbjct: 31 QQARDLLIEKNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLTYDVRFSTYAV 90 Query: 1346 WWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIE 1522 I I++ I + +++ S+ K+ +A+ E G PT Q +A I E Sbjct: 91 PMIIGEIQRFI-RDDGTVKVSRSLKELGNKIRRAKDELSKTLGRVPTVQEIADHLEIEAE 149 Query: 1523 KLAKLKAKTRKPRSMQDQVWSNDA--VTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGI 1696 + + R P S+ + V+ ND +T + D +S + D+I +++ + + Sbjct: 150 DVVLAQEAVRAPSSIHETVYENDGDPITLLDQIAD---NSEEKWFDKIALKEAISD---- 202 Query: 1697 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 L REK IV R+ + +T + + G+S+ ++ +L+ + L ++K Sbjct: 203 LEEREKLIVYLRY----YKDQTQSEVAERLGISQVQVSRLEKKILKQIK 247
>P62181:RP28_BACTK RNA polymerase sigma-28 factor precursor - Bacillus thuringiensis| subsp. kurstaki Length = 237 Score = 76.3 bits (186), Expect = 5e-13 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 3/227 (1%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 + R + N RLV H+ +K++ G D EDL+ G GL+K E ++ KG + TYA Sbjct: 48 QARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKLATYA-- 105 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKL 1528 + I+ I H R+++ Sbjct: 106 --ARCIENEILMHLRVLK------------------------------------------ 121 Query: 1529 AKLKAKTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGIL 1699 KT+K S+ D + + + ++ +I + + D D+ + M ++++E++ IL Sbjct: 122 -----KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDM-IQLSMELEKIKEYIDIL 175 Query: 1700 STREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 REKE++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 176 DEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>P62180:RP28_BACCR RNA polymerase sigma-28 factor precursor - Bacillus cereus (strain| ATCC 14579 / DSM 31) Length = 237 Score = 76.3 bits (186), Expect = 5e-13 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 3/227 (1%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 + R + N RLV H+ +K++ G D EDL+ G GL+K E ++ KG + TYA Sbjct: 48 QARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKLATYA-- 105 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKL 1528 + I+ I H R+++ Sbjct: 106 --ARCIENEILMHLRVLK------------------------------------------ 121 Query: 1529 AKLKAKTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGIL 1699 KT+K S+ D + + + ++ +I + + D D+ + M ++++E++ IL Sbjct: 122 -----KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDM-IQLSMELEKIKEYIDIL 175 Query: 1700 STREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 REKE++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 176 DEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>P62182:RP28_BACAN RNA polymerase sigma-28 factor precursor - Bacillus anthracis| Length = 237 Score = 76.3 bits (186), Expect = 5e-13 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 3/227 (1%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 + R + N RLV H+ +K++ G D EDL+ G GL+K E ++ KG + TYA Sbjct: 48 QARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKLATYA-- 105 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKL 1528 + I+ I H R+++ Sbjct: 106 --ARCIENEILMHLRVLK------------------------------------------ 121 Query: 1529 AKLKAKTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGIL 1699 KT+K S+ D + + + ++ +I + + D D+ + M ++++E++ IL Sbjct: 122 -----KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDM-IQLSMELEKIKEYIDIL 175 Query: 1700 STREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 1840 REKE++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 176 DEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>P35145:RPSF_BACME RNA polymerase sigma-F factor - Bacillus megaterium| Length = 253 Score = 75.1 bits (183), Expect = 1e-12 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R+ + + N RLV V +++ G + +DL Q GC GL+K+ +KF+ S +F TYA I Sbjct: 34 RDTIVQKNMRLVWSVVQRFINRGYEPDDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMI 93 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECI-LEGEQPTNQNVARRAGISIEKLA 1531 I++ I + +++ S+ K+ KA+ E L G PT VA ++ E++ Sbjct: 94 IGEIQRFI-RDDGTVKVSRSLKEMSNKIRKAKDELSKLLGRVPTVAEVAEHLDLTPEEVV 152 Query: 1532 KLKAKTRKPRSMQDQVWSNDA--VTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILST 1705 + R P S+ + V+ ND +T + D + D+I +++ + E L Sbjct: 153 LAQEANRAPSSIHETVYENDGDPITLLDQIAD---HTEAKWFDKIALKEAIEE----LDE 205 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 REK IV R+ + +T + G+S+ ++ +L+ + L ++K Sbjct: 206 REKLIVYLRY----YKDQTQSEVAARLGISQVQVSRLEKKILKQMK 247
>P06222:RPSE_BACSU RNA polymerase sigma-E factor precursor - Bacillus subtilis| Length = 239 Score = 74.7 bits (182), Expect = 1e-12 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 3/227 (1%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R + N RLV+++ARK++ G++IEDL+ G GL+K FNP K + TYA Sbjct: 59 RAILIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYA---- 114 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAK 1534 SR I + L++ K R E + ++P N + Sbjct: 115 -----------SRCIE--NEILMYLRRNNKIRSE--VSFDEPLNID-------------- 145 Query: 1535 LKAKTRKPRSMQDQVWSNDAVTFQEIT-EDPNIDSPDLV--VDRIMMRQQVREFLGILST 1705 W + + ++ D +I + D+ VD+ ++++ + + L+ Sbjct: 146 ---------------WDGNELLLSDVLGTDDDIITKDIEANVDKKLLKKALEQ----LNE 186 Query: 1706 REKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 REK+I+E RFG+ E KT + DM G+S+ I +L+ R + +L++ Sbjct: 187 REKQIMELRFGLVGEEEKTQKDVADMMGISQSYISRLEKRIIKRLRK 233
>P33657:RPSE_CLOAB RNA polymerase sigma-E factor - Clostridium acetobutylicum| Length = 235 Score = 67.0 bits (162), Expect = 3e-10 Identities = 56/227 (24%), Positives = 95/227 (41%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 R + N RLV+++ARK++ G+ +EDL+ G GL+K F+P+K + TY Sbjct: 55 RSILIERNLRLVVYIARKFENTGVGVEDLISVGTIGLIKAVNTFDPTKKIKLATYG---- 110 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAK 1534 SR I +Y R KA + +P N + Sbjct: 111 -----------SRCIENEILMYLRRNSKVKAEISFY----EPLNID-------------- 141 Query: 1535 LKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 1714 W + + +I N D +++ + +Q + L L+ REK Sbjct: 142 ---------------WDGNKLLLSDILGTDN-DCVYNLIEGEVDKQLLLFALKKLNEREK 185 Query: 1715 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 IVE R+G+ KT + DM G+S+ I +L+ R + +LK+ ++ Sbjct: 186 RIVELRYGLTGVGEKTQKEVADMLGISQSYISRLEKRIIKRLKKEIN 232
>P0AEM6:FLIA_ECOLI RNA polymerase sigma factor for flagellar operon - Escherichia coli| Length = 239 Score = 64.7 bits (156), Expect = 2e-09 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 6/219 (2%) Frame = +2 Query: 1205 LVIHVARKYQ---GYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKS 1375 LV H A + Q ++++DL+Q G GL+ E+++ +G F TYA IR A+ Sbjct: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 Query: 1376 IFKHSRLIRLPESVYARLKKVGKA--RLECILEGEQPTNQNVARRAGISIEKLAKLKAKT 1549 + +P SV ++V +A +LE L G T VA R GI I ++ T Sbjct: 83 LRSRD---WVPRSVRRNAREVAQAIGQLEQEL-GRNATETEVAERLGIDIADYRQMLLDT 138 Query: 1550 RKPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVE 1726 + W + + + +T+D ++P + +RQ+V E + L REK ++ Sbjct: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 Query: 1727 HRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Y E L IG + + + R+ QL ++A+ +L+ Sbjct: 199 ----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
>P0AEM7:FLIA_ECOL6 RNA polymerase sigma factor for flagellar operon - Escherichia coli| O6 Length = 239 Score = 64.7 bits (156), Expect = 2e-09 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 6/219 (2%) Frame = +2 Query: 1205 LVIHVARKYQ---GYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKS 1375 LV H A + Q ++++DL+Q G GL+ E+++ +G F TYA IR A+ Sbjct: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 Query: 1376 IFKHSRLIRLPESVYARLKKVGKA--RLECILEGEQPTNQNVARRAGISIEKLAKLKAKT 1549 + +P SV ++V +A +LE L G T VA R GI I ++ T Sbjct: 83 LRSRD---WVPRSVRRNAREVAQAIGQLEQEL-GRNATETEVAERLGIDIADYRQMLLDT 138 Query: 1550 RKPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVE 1726 + W + + + +T+D ++P + +RQ+V E + L REK ++ Sbjct: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 Query: 1727 HRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Y E L IG + + + R+ QL ++A+ +L+ Sbjct: 199 ----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
>P0AEM8:FLIA_ECO57 RNA polymerase sigma factor for flagellar operon - Escherichia coli| O157:H7 Length = 239 Score = 64.7 bits (156), Expect = 2e-09 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 6/219 (2%) Frame = +2 Query: 1205 LVIHVARKYQ---GYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKS 1375 LV H A + Q ++++DL+Q G GL+ E+++ +G F TYA IR A+ Sbjct: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 Query: 1376 IFKHSRLIRLPESVYARLKKVGKA--RLECILEGEQPTNQNVARRAGISIEKLAKLKAKT 1549 + +P SV ++V +A +LE L G T VA R GI I ++ T Sbjct: 83 LRSRD---WVPRSVRRNAREVAQAIGQLEQEL-GRNATETEVAERLGIDIADYRQMLLDT 138 Query: 1550 RKPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVE 1726 + W + + + +T+D ++P + +RQ+V E + L REK ++ Sbjct: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 Query: 1727 HRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Y E L IG + + + R+ QL ++A+ +L+ Sbjct: 199 ----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
>P37970:RPOF_STRAU RNA polymerase sigma-F factor - Streptomyces aureofaciens| Length = 297 Score = 63.2 bits (152), Expect = 5e-09 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 2/238 (0%) Frame = +2 Query: 1136 KDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPS 1315 K LQ R R + +N LV + A +++ +ED+VQ G GL+ ++F+P Sbjct: 61 KGLQPGTREHERVRGALIEANLPLVRYAAARFRSRNEPMEDVVQVGTIGLINAIDRFDPE 120 Query: 1316 KGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLE-CILEGEQPTNQN 1492 +G +FPT+A + IK+ + R + +P ++ +V A + L G PT Sbjct: 121 RGVQFPTFAMPTVVGEIKRYFRDNVRTVHVPRRLHELWVQVNAATEDLTTLHGRTPTTPE 180 Query: 1493 VARRAGIS-IEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 1669 +A R IS E L+ ++A + + D + + + + P+L + R Sbjct: 181 IAERLRISEDEVLSCIEAGRSYHATSLEAAQEGDGM--PGLLDRLGYEDPELA--GVEHR 236 Query: 1670 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 VR L L RE+ I+ R+ Y+ T I G+S+ + +L R+ +L+ Sbjct: 237 DLVRHLLVQLPEREQRILLLRY--YNN--LTQSQISAELGVSQMHVSRLLARSFARLR 290
>P37971:RPOF_STRCO RNA polymerase sigma-F factor - Streptomyces coelicolor| Length = 287 Score = 60.8 bits (146), Expect = 2e-08 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 2/227 (0%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 R R + +N LV + A +++ +ED+VQ G GL+ ++F+P +G +FPT+A Sbjct: 62 RVRAALIEANLPLVRYAAARFRSRNEPMEDVVQVGTIGLINAIDRFDPERGVQFPTFAMP 121 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEK 1525 + IK+ + R + +P ++ +V A + G PT +A R I+ E+ Sbjct: 122 TVVGEIKRYFRDNVRTVHVPRRLHELWVQVNSATEDLTTAFGRSPTTAEIAERLRITEEE 181 Query: 1526 -LAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILS 1702 L+ ++A + + D + + + + P L D + R VR L L Sbjct: 182 VLSCIEAGRSYHATSLEAAQEGDGL--PGLLDRLGYEDPAL--DGVEHRDLVRHLLVQLP 237 Query: 1703 TREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 RE+ I+ R+ Y T I G+S+ + +L R+ +L+ Sbjct: 238 EREQRILLLRY--YSN--LTQSQISAELGVSQMHVSRLLARSFQRLR 280
>P0A2E8:FLIA_SALTY RNA polymerase sigma factor for flagellar operon - Salmonella| typhimurium Length = 239 Score = 59.7 bits (143), Expect = 5e-08 Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Frame = +2 Query: 1205 LVIHVARKYQ---GYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKS 1375 LV H A + Q ++++DL+Q G GL+ ++++ +G F TYA IR A+ Sbjct: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDE 82 Query: 1376 IFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTR 1552 + +P SV ++V +A + E G T VA R GI + + ++ T Sbjct: 83 LRSRD---WVPRSVRRNAREVAQAMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTN 139 Query: 1553 KPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEH 1729 + W + + + +TE+ ++P + +RQ+V + + L RE+ ++ Sbjct: 140 NSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLT- 198 Query: 1730 RFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Y E L IG + + + R+ QL ++A+ +L+ Sbjct: 199 ---LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
>P0A2E9:FLIA_SALTI RNA polymerase sigma factor for flagellar operon - Salmonella typhi| Length = 239 Score = 59.7 bits (143), Expect = 5e-08 Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Frame = +2 Query: 1205 LVIHVARKYQ---GYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKS 1375 LV H A + Q ++++DL+Q G GL+ ++++ +G F TYA IR A+ Sbjct: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDE 82 Query: 1376 IFKHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTR 1552 + +P SV ++V +A + E G T VA R GI + + ++ T Sbjct: 83 LRSRD---WVPRSVRRNAREVAQAMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTN 139 Query: 1553 KPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEH 1729 + W + + + +TE+ ++P + +RQ+V + + L RE+ ++ Sbjct: 140 NSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLT- 198 Query: 1730 RFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Y E L IG + + + R+ QL ++A+ +L+ Sbjct: 199 ---LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
>P17211:RPSW_STRCO RNA polymerase sigma factor whiG - Streptomyces coelicolor| Length = 280 Score = 58.9 bits (141), Expect = 8e-08 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 11/243 (4%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQ-GYGLDIE--DLVQDGCCGLMKTFEKFNPSKGCRFPTY 1339 R RE++ LV +VA + G ++E D V G GL+ EKF+ + +F TY Sbjct: 45 RLREQLILHYSPLVKYVAGRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDVDREIKFETY 104 Query: 1340 AYWWIRQAIKKSIFKHSRLIRLPESVYARLKKVGK--ARLECILEGEQPTNQNVARRAGI 1513 A IR A+ I + L +P SV + + V + A LE L P+ VA GI Sbjct: 105 AITRIRGAM---IDELRALDWIPRSVRQKARNVERAYATLEARLR-RTPSESEVAVEMGI 160 Query: 1514 SIEKLAKLKAKTRKPR--SMQDQVWS----NDAVTFQEITEDPNIDSPDLVVDRIMMRQQ 1675 ++E L + ++ ++++ + + ++ + ED D+P V + +R+ Sbjct: 161 AVEDLHAVFSQLSLANVVALEELLHAGGEGGGRLSLMDTLEDTAADNPVEVAEDRELRRL 220 Query: 1676 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 1855 + + L REK +V +Y E TL IG++ G+++ R+ Q+ +++ +L+ ++ Sbjct: 221 LARAINTLPEREKTVVT----LYYYEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLA 276 Query: 1856 TQG 1864 G Sbjct: 277 GFG 279
>P10726:RPSD_BACSU RNA polymerase sigma-D factor - Bacillus subtilis| Length = 254 Score = 57.0 bits (136), Expect = 3e-07 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 12/222 (5%) Frame = +2 Query: 1214 HVARKYQGYGLDI--EDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKH 1387 HV R G + +DL+ G GL EKF+PS+ +F TYA + IR AI + K Sbjct: 38 HVGRISVGLPKSVHKDDLMSLGMLGLYDALEKFDPSRDLKFDTYASFRIRGAIIDGLRKE 97 Query: 1388 SRLIRL----PESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLKAK--- 1546 L R + V A ++K+ + L + E +A G++++ + + Sbjct: 98 DWLPRTSREKTKKVEAAIEKLEQRYLRNVSPAE------IAEELGMTVQDVVSTMNEGFF 151 Query: 1547 ---TRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKE 1717 + DQ +D Q + D P+ + + + Q+ E + LS +E+ Sbjct: 152 ANLLSIDEKLHDQ---DDGENIQVMIRDDKNVPPEEKIMKDELIAQLAEKIHELSEKEQL 208 Query: 1718 IVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +V ++ E TL IG + LS RI Q+ ++AL KLK Sbjct: 209 VV----SLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLK 246
>P06574:RPSB_BACSU RNA polymerase sigma-B factor - Bacillus subtilis| Length = 262 Score = 53.9 bits (128), Expect = 3e-06 Identities = 52/234 (22%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Frame = +2 Query: 1169 RCREKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYW 1348 + +E + R LV +A+KY EDL Q G GL+ ++++P G F +A Sbjct: 29 QAQETLVRVYTNLVDMLAKKYSKGKSFHEDLRQVGMIGLLGAIKRYDPVVGKSFEAFAIP 88 Query: 1349 WIRQAIKKSIFKHSRLIRLPESVYARLKKVGKARLECILEGEQ-PTNQNVARRAGISIEK 1525 I IK+ + + + +P + ++ A + E ++ P + +A +S E+ Sbjct: 89 TIIGEIKRFLRDKTWSVHVPRRIKELGPRIKMAVDQLTTETQRSPKVEEIAEFLDVSEEE 148 Query: 1526 LAKL--KAKTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFL 1690 + + K+ + S+ + ++ VT +I + S + +R+ + ++ L Sbjct: 149 VLETMEMGKSYQALSVDHSIEADSDGSTVTILDI-----VGSQEDGYERVNQQLMLQSVL 203 Query: 1691 GILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 1852 +LS REK+I++ + + +T GD+ G+S+ + +LQ +A+ KL+ ++ Sbjct: 204 HVLSDREKQIIDLTYIQNKSQKET----GDILGISQMHVSRLQRKAVKKLREAL 253
>P52621:FLIA_YEREN RNA polymerase sigma factor for flagellar operon - Yersinia| enterocolitica Length = 230 Score = 53.9 bits (128), Expect = 3e-06 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 6/219 (2%) Frame = +2 Query: 1205 LVIHVARKYQ---GYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKS 1375 LV H A + Q ++++DL+Q G GL+ E+++ +G F TYA IR A+ Sbjct: 13 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDRLQGTAFTTYAVQRIRGAMLDE 72 Query: 1376 IFKHSRLIRLPESVYARLKKVGKA--RLECILEGEQPTNQNVARRAGISIEKLAKLKAKT 1549 + P SV ++V A ++E L G T Q VA+ I + + ++ T Sbjct: 73 LRSRD---WAPRSVRRNAREVASAMQKVEQRL-GRPATEQEVAQNLDIDLTEYRQILLDT 128 Query: 1550 RKPRSMQDQVWSND-AVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVE 1726 + W + + + + E +P + +RQ+V E + L REK ++ Sbjct: 129 NNSQLFSYDEWREEHGESVEPMLEGHEDANPLQHLLEGNLRQRVIEAIEALPEREKMVLT 188 Query: 1727 HRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 1843 +Y E L IG + + + R+ QL ++A+ +L+ Sbjct: 189 ----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 223
>P26768:RPSX_BACTK Putative RNA polymerase sigma-G factor - Bacillus thuringiensis| subsp. kurstaki Length = 125 Score = 52.8 bits (125), Expect = 6e-06 Identities = 28/81 (34%), Positives = 47/81 (58%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 REK+ N RLV+ V +++ G ++DL Q GC GLMK+ + F+ + +F TYA I Sbjct: 39 REKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDLGQNVKFSTYAVPMI 98 Query: 1355 RQAIKKSIFKHSRLIRLPESV 1417 I++ + + + IR+ S+ Sbjct: 99 IGEIRRYL-RDNNPIRVSRSL 118
>P29248:FLIA_PSEAE RNA polymerase sigma factor for flagellar operon - Pseudomonas| aeruginosa Length = 247 Score = 50.8 bits (120), Expect = 2e-05 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 3/203 (1%) Frame = +2 Query: 1244 LDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYA 1423 + +EDL+Q G GL++ +K++ KG F TYA IR A+ + K P SV+ Sbjct: 45 VQVEDLMQAGMIGLLEAAKKYDAGKGASFETYAGIRIRGAMLDEVRKGD---WAPRSVHR 101 Query: 1424 RLKKVGKA-RLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKPR--SMQDQVWSNDA 1594 + V A R G + VA +S+E + + T+ R S D + + Sbjct: 102 NTRMVTDAIRAIEARTGRDAKDHEVAAELQLSLEDYYGILSDTQGSRLYSFDDLLQDGEH 161 Query: 1595 VTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVI 1774 ++ + N L+ +R + + + + L RE+ ++ +Y E L I Sbjct: 162 GLPEDTSLSHNEPIHGLLDER--FQAALADAIAKLPERERLVL----ALYYDEELNLKEI 215 Query: 1775 GDMYGLSKERIRQLQNRALDKLK 1843 G++ G+S+ R+ QL ++ +L+ Sbjct: 216 GEVLGVSESRVSQLHSQCAARLR 238
>Q9K5J6:RPSB_BACAN RNA polymerase sigma-B factor - Bacillus anthracis| Length = 257 Score = 50.1 bits (118), Expect = 4e-05 Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 6/231 (2%) Frame = +2 Query: 1175 REKMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWI 1354 +E++ LV +A +Y G ED++Q G GL+ +++ S G F +A I Sbjct: 31 QERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPTI 90 Query: 1355 RQAIKKSIFKHSRLIRLPESVYARLKKVG---KARLECILEGEQ--PTNQNVARRAGISI 1519 IKK + + I +P R+K +G K +E + + Q P +A G+S Sbjct: 91 VGEIKKYLRDKTWGIHVPR----RIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSE 146 Query: 1520 EKLAK-LKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGI 1696 E++ + + AK S D V N A + ++ + ++ R +++ + Sbjct: 147 EEVLEIMDAKNNYRVSSLDDVVEN-ASDGSSVARIESVGEVEQGYEQTERRLVLKDIFNV 205 Query: 1697 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 1849 L+ EK ++ + F + T G+ G+S+ + +++ +A+ KLK++ Sbjct: 206 LNETEKSVIHYIFEENLNQKDT----GERLGISQMHVSRIKRQAISKLKQA 252
>P17869:RPSH_BACSU RNA polymerase sigma-H factor - Bacillus subtilis| Length = 218 Score = 40.8 bits (94), Expect = 0.024 Identities = 26/72 (36%), Positives = 35/72 (48%) Frame = +2 Query: 1220 ARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLI 1399 AR Y G D ED+VQ+G GL K+ F K F +A I + I +I +R Sbjct: 50 ARSYFLIGADREDIVQEGMIGLYKSIRDFKEDKLTSFKAFAELCITRQIITAIKTATRQK 109 Query: 1400 RLPESVYARLKK 1435 +P + YA L K Sbjct: 110 HIPLNSYASLDK 121
>Q04922:MFB1_YEAST Mitochondrial F-box protein MFB1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 465 Score = 40.0 bits (92), Expect = 0.041 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%) Frame = +2 Query: 407 PSLVAEEQHAHGAVSLKGEKALLEFLLDMALEQHTEGKSLTGEDGAEGEFESYLRGLQRQ 586 P+ + EQ AH A+ L+G +E L D A H+ T + GE S L GL++ Sbjct: 147 PTEITREQIAHTAI-LQGMNQFIE-LNDKAFRTHSADSDDTYIEENNGEIHS-LHGLEKN 203 Query: 587 VIYQQAFGEKNSFIPVTT--------STSTPDAQSGAILDRG--------ATSAATVMKE 718 +++ +K FIP T + S + S +LD S KE Sbjct: 204 TTFEEDLVKKPPFIPSPTFSNYSRSSTNSVFSSSSPKLLDDDWNNITMDFTKSRDPDYKE 263 Query: 719 VTILTEESGTSVESKHPYDKLLSNGQVF----IRSTRLLERRSKKRNVPRASTSTDV 877 +T + ES S+ +K+ ++F R +R L ++KK++ PR S+ + Sbjct: 264 MTPTSTESSDSITRLRKSNKVKDKAELFEKLIFRDSRPL--KTKKKDNPRLKLSSSL 318
>P02964:RPSH_BACLI RNA polymerase sigma-H factor - Bacillus licheniformis| Length = 223 Score = 39.3 bits (90), Expect = 0.070 Identities = 25/72 (34%), Positives = 34/72 (47%) Frame = +2 Query: 1220 ARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLI 1399 AR Y G D ED+VQ+G GL K+ F K F +A I + I +I +R Sbjct: 55 ARSYFLIGADREDIVQEGMIGLYKSIRDFREDKLTSFKAFAELCITRQIITAIKTATRQK 114 Query: 1400 RLPESVYARLKK 1435 +P + Y L K Sbjct: 115 HIPLNSYVSLDK 126
>Q8VDC1:FYCO1_MOUSE FYVE and coiled-coil domain-containing protein 1 - Mus musculus| (Mouse) Length = 1437 Score = 35.8 bits (81), Expect = 0.77 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = +2 Query: 1442 KARLECILEGEQPTNQNVARRAGISIEKLAK-LKAKTRKPRSMQDQVWSNDAVTFQEITE 1618 K +L+ LEGE Q + R+ I +E+LAK L+ K S+ V D V QE Sbjct: 395 KGKLQA-LEGENTEAQELNRQQSIKLEQLAKELQLKEEARASLAHLV--KDVVPLQEELS 451 Query: 1619 DPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHR 1732 +S L R+Q++E L LS+ E+E+ E R Sbjct: 452 GKKQESAQL-------RRQLQESLAHLSSVEEELAEAR 482
>Q8CGC7:SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA| synthetase - Mus musculus (Mouse) Length = 1512 Score = 35.0 bits (79), Expect = 1.3 Identities = 28/90 (31%), Positives = 44/90 (48%) Frame = +2 Query: 686 GATSAATVMKEVTILTEESGTSVESKHPYDKLLSNGQVFIRSTRLLERRSKKRNVPRAST 865 G SAA V T+ T+ S +VES Y+K+ + G+V R+ K P+A Sbjct: 802 GNPSAAAVQ---TVSTKSSSNTVESTSLYNKVAAQGEVV--------RKLKAEKAPKAKV 850 Query: 866 STDVVQCSVADSKKKDRPKKYGRVLGPDEP 955 T+ V+C + S K + +K G+ P +P Sbjct: 851 -TEAVECLL--SLKAEYKEKTGKDYVPGQP 877
>P49292:PEPC1_UROPA Phosphoenolpyruvate carboxykinase [ATP] 1 - Urochloa panicoides| (Panic liverseed grass) Length = 624 Score = 34.7 bits (78), Expect = 1.7 Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 1/139 (0%) Frame = +2 Query: 311 RGAASSPSPSRTSVPMIHDSTGGRASTACHYSPSLVAEEQHAHGAVSLKGEKALLEFLLD 490 R AA++ S + + I S ASTA Y P+LV + A GA Sbjct: 35 RKAAATAKDSASPLQSISASL---ASTAREYGPNLVKGDPEAKGAPP-----------AP 80 Query: 491 MALEQHTEGKSLTGEDGAEGEFESYLRGLQRQVIYQQAFGE-KNSFIPVTTSTSTPDAQS 667 + +Q ++ D + +F L L +Y+QAFG+ K+SFI TST S Sbjct: 81 VKHQQAAAAAAIAASDSSL-KFTHVLYNLSPAELYEQAFGQKKSSFI---TSTGALATLS 136 Query: 668 GAILDRGATSAATVMKEVT 724 GA R V + T Sbjct: 137 GAKTGRSPRDKRVVKDDTT 155
>Q03474:LAFS_VIBPA RNA polymerase sigma factor for flagellar operon - Vibrio| parahaemolyticus Length = 242 Score = 34.3 bits (77), Expect = 2.2 Identities = 44/217 (20%), Positives = 88/217 (40%) Frame = +2 Query: 1208 VIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKH 1387 V++ R + IED+ Q G L++ ++ FP +A +R AI + + Sbjct: 39 VVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL 98 Query: 1388 SRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKPRSM 1567 R L V + + G PT+ + + G + R+ ++ Sbjct: 99 DWRSRKTRQQAHELNDVTRDLTRSL--GRMPTDSEIIKALGTDEQDY-----YNRQNAAL 151 Query: 1568 QDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYD 1747 ++ S D + E + D + ++ +R+ + LG LS R++ ++ ++ Sbjct: 152 AGEMQSLDQL--MENSTDSHFGGQYDGMEHEHIRRSLDSALGRLSKRDQLLLT----LFY 205 Query: 1748 GEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 1858 LH I + L+ RI QL +AL +L + +S+ Sbjct: 206 QHELNLHEIALVLDLTPPRICQLHKQALKQLNQLMSS 242
>P39784:PCF_BACSU Positive control factor - Bacillus subtilis| Length = 169 Score = 33.5 bits (75), Expect = 3.8 Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 8/165 (4%) Frame = +2 Query: 1376 IFKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRK 1555 +F++ R ++ Y L + E +L E+ ++ + R +E + + K R+ Sbjct: 5 LFEYKRTLKQTRIQYKPLAEAD----ESVLSAEELKDKKIIRNMITDLEYVTEWLEKGRQ 60 Query: 1556 P--------RSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTRE 1711 P R + ++ D + + + V + R ++RE L +L+ RE Sbjct: 61 PGIRRAIDRRDVYQRLMIKDPRIIESFSSAMMFEPDGQVSEED--RDRIREALALLTDRE 118 Query: 1712 KEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 1846 KE+ F ++ E + I D+ G+ K ++ RA K++R Sbjct: 119 KEM----FLLHKVECFSYERIADLLGVKKSTVQTTIKRASLKMQR 159
>Q8BWJ3:KPB2_MOUSE Phosphorylase b kinase regulatory subunit alpha, liver isoform - Mus| musculus (Mouse) Length = 1235 Score = 33.1 bits (74), Expect = 5.0 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 9/193 (4%) Frame = +2 Query: 323 SSPSPSRTSVPMIHDSTGGRASTACHYSPSLVAEEQHAHGAVSLKGEKALLEFLLDMALE 502 S+P P +I++++G S A +V + SL E L L + + Sbjct: 865 STPLPPEELTELIYEASGQDISIAVLTQEIVVYLAMYVRAQPSLFAEMLRLRIGLIIQVM 924 Query: 503 QHTEGKSL--TGEDGAEGEFESY---LRGLQRQVIYQQAFGEKNSFIPVTTSTSTPDAQS 667 +SL +G++ +E ++ L ++ + FG + S P+ +S S+P Sbjct: 925 ATELARSLNCSGKEASESLMNLSPFDMKSLLHHILSGKEFGVERSVRPIHSSMSSPAISI 984 Query: 668 GAILDRGAT----SAATVMKEVTILTEESGTSVESKHPYDKLLSNGQVFIRSTRLLERRS 835 + GAT S T ++ ++ E P + +SN I+S RS Sbjct: 985 HEVGHTGATKTERSGITRLRSEMKQMNRRASADEQFFPLGQTMSNSLHSIKSV-----RS 1039 Query: 836 KKRNVPRASTSTD 874 + P ++STD Sbjct: 1040 STPSSPTGTSSTD 1052
>Q92SN8:PYRF_RHIME Orotidine 5'-phosphate decarboxylase - Rhizobium meliloti| (Sinorhizobium meliloti) Length = 234 Score = 32.7 bits (73), Expect = 6.5 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +1 Query: 1783 VRLVQGADPAAPEPGLGQAEAERVDAGVRRLLGPADLERLGGASFVLG 1926 VR + G D A PG+ A AE+ D +R++ PAD R G + V+G Sbjct: 163 VRKIIGGDMALVTPGIRPAGAEKGDQ--KRVMTPADALRAGSSHLVVG 208 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 351,542,201 Number of extensions: 7484701 Number of successful extensions: 23030 Number of sequences better than 10.0: 144 Number of HSP's gapped: 22901 Number of HSP's successfully gapped: 156 Length of query: 740 Length of database: 100,686,439 Length adjustment: 121 Effective length of query: 619 Effective length of database: 67,496,744 Effective search space: 41780484536 Effective search space used: 41780484536 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
