ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf137i11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001060208.1| Oryza sativa (japonica cultivar-group) Os04g0584900 (Os04g0584900) mRNA, complete cds Length = 1315 Score = 543 bits (274), Expect = e-151 Identities = 589/694 (84%) Strand = Plus / Plus Query: 199 cgaggtggccccgcccaatcagggcttcgagcggcacgagtggcgccccggacggggagc 258 ||||||||||||| ||||| ||||||||||||| | ||||||| | | ||||||| | Sbjct: 182 cgaggtggccccggccaattagggcttcgagcgacggtagtggcgtcgcaaacggggacc 241 Query: 259 ggaggatcggcgctctggagaggagggtgggggatttgagggcgcttgtcgcctcggtgc 318 ||| | |||| |||||||||||||||||||| ||| ||||||| | ||||||||||||| Sbjct: 242 ggaaggtcggggctctggagaggagggtgggagatctgagggctgtcgtcgcctcggtgc 301 Query: 319 cccctgctgttgtctcgatcaggaaaaacattggactaagttccgttgctggtttcggct 378 |||||||||||| |||||| ||||||||||||||||| | ||||||| ||| | Sbjct: 302 cccctgctgttgctgcgatcaagaaaaacattggactaaactttattgctggattctgtc 361 Query: 379 tcggcattgcatttttggctgctgttgcaaggcaggttgtcataagaacgcaacaccaag 438 ||||||| || ||||||||||||||||||| ||||| |||| || | || | | | Sbjct: 362 tcggcatcacacttttggctgctgttgcaagacaggtcatcattaggattcatgagcgtg 421 Query: 439 ataataatggttctgttgctgatctagtaaggcgtgggcatctaaaatcagggcaacgtg 498 | ||||| || ||||||||||| ||| |||||||||| || |||||||||| ||||||| Sbjct: 422 acaataaaggctctgttgctgacctaataaggcgtggacaattaaaatcaggacaacgtg 481 Query: 499 ggattgcaaaaccacgggtgtacaatgatcctttcaataatccgttagtcaagatcgatg 558 |||| |||||||| || |||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 482 ggatagcaaaaccccgagtgtacgatgatcctttcaataatccattagtcaagattgatg 541 Query: 559 aaggtacttctactgctcaaatgtttggcaaggagtaccgcatggctcctgtccggctta 618 | | ||||||||| |||||| ||||||||||||||||||| | ||||| | |||||| Sbjct: 542 aggatacttctaccgctcaagtgtttggcaaggagtaccggcttgctcccattaggctta 601 Query: 619 caaatgaacaacagacaatgcatcagaaaaggcgatcacatgcatatcagtggaaaaggc 678 |||| |||||||| ||||||||||||||||| |||||| | | |||||||||||||||| Sbjct: 602 caaaagaacaacaagcaatgcatcagaaaaggagatcacgtacgtatcagtggaaaaggc 661 Query: 679 ccaccgtgtttcttaaagaaggtgatcccctgccaccagatgtcgatccagagacagtta 738 |||| || |||||||||||||||||| || ||||||||||||| |||||||| ||||||| Sbjct: 662 ccactgtttttcttaaagaaggtgattccttgccaccagatgttgatccagatacagtta 721 Query: 739 gatggattccagtaaaccacccatttgctgctggttcagttgaagtagatgaggagactg 798 |||||||||| |||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct: 722 gatggattcccgtaaaccacccatttgctgctgcttcaactgaagtggatgaggagactg 781 Query: 799 ccaaaaggaatgtttatcaaaaggatggtgtcccgtcccgtgttaaagccgaacatgaag 858 | ||| |||||||||||||||||||| ||||| |||||||| ||||| || ||||||| Sbjct: 782 ctaaacaaaatgtttatcaaaaggatggggtcccatcccgtgtcaaagctgagcatgaag 841 Query: 859 ctttgagggcaaggctagaggcttctaatgatgt 892 ||||| | |||||||||||||||| ||| |||| Sbjct: 842 ctttgcagacaaggctagaggcttcaaataatgt 875
>dbj|AK102928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114E24, full insert sequence Length = 1317 Score = 543 bits (274), Expect = e-151 Identities = 589/694 (84%) Strand = Plus / Plus Query: 199 cgaggtggccccgcccaatcagggcttcgagcggcacgagtggcgccccggacggggagc 258 ||||||||||||| ||||| ||||||||||||| | ||||||| | | ||||||| | Sbjct: 183 cgaggtggccccggccaattagggcttcgagcgacggtagtggcgtcgcaaacggggacc 242 Query: 259 ggaggatcggcgctctggagaggagggtgggggatttgagggcgcttgtcgcctcggtgc 318 ||| | |||| |||||||||||||||||||| ||| ||||||| | ||||||||||||| Sbjct: 243 ggaaggtcggggctctggagaggagggtgggagatctgagggctgtcgtcgcctcggtgc 302 Query: 319 cccctgctgttgtctcgatcaggaaaaacattggactaagttccgttgctggtttcggct 378 |||||||||||| |||||| ||||||||||||||||| | ||||||| ||| | Sbjct: 303 cccctgctgttgctgcgatcaagaaaaacattggactaaactttattgctggattctgtc 362 Query: 379 tcggcattgcatttttggctgctgttgcaaggcaggttgtcataagaacgcaacaccaag 438 ||||||| || ||||||||||||||||||| ||||| |||| || | || | | | Sbjct: 363 tcggcatcacacttttggctgctgttgcaagacaggtcatcattaggattcatgagcgtg 422 Query: 439 ataataatggttctgttgctgatctagtaaggcgtgggcatctaaaatcagggcaacgtg 498 | ||||| || ||||||||||| ||| |||||||||| || |||||||||| ||||||| Sbjct: 423 acaataaaggctctgttgctgacctaataaggcgtggacaattaaaatcaggacaacgtg 482 Query: 499 ggattgcaaaaccacgggtgtacaatgatcctttcaataatccgttagtcaagatcgatg 558 |||| |||||||| || |||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 483 ggatagcaaaaccccgagtgtacgatgatcctttcaataatccattagtcaagattgatg 542 Query: 559 aaggtacttctactgctcaaatgtttggcaaggagtaccgcatggctcctgtccggctta 618 | | ||||||||| |||||| ||||||||||||||||||| | ||||| | |||||| Sbjct: 543 aggatacttctaccgctcaagtgtttggcaaggagtaccggcttgctcccattaggctta 602 Query: 619 caaatgaacaacagacaatgcatcagaaaaggcgatcacatgcatatcagtggaaaaggc 678 |||| |||||||| ||||||||||||||||| |||||| | | |||||||||||||||| Sbjct: 603 caaaagaacaacaagcaatgcatcagaaaaggagatcacgtacgtatcagtggaaaaggc 662 Query: 679 ccaccgtgtttcttaaagaaggtgatcccctgccaccagatgtcgatccagagacagtta 738 |||| || |||||||||||||||||| || ||||||||||||| |||||||| ||||||| Sbjct: 663 ccactgtttttcttaaagaaggtgattccttgccaccagatgttgatccagatacagtta 722 Query: 739 gatggattccagtaaaccacccatttgctgctggttcagttgaagtagatgaggagactg 798 |||||||||| |||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct: 723 gatggattcccgtaaaccacccatttgctgctgcttcaactgaagtggatgaggagactg 782 Query: 799 ccaaaaggaatgtttatcaaaaggatggtgtcccgtcccgtgttaaagccgaacatgaag 858 | ||| |||||||||||||||||||| ||||| |||||||| ||||| || ||||||| Sbjct: 783 ctaaacaaaatgtttatcaaaaggatggggtcccatcccgtgtcaaagctgagcatgaag 842 Query: 859 ctttgagggcaaggctagaggcttctaatgatgt 892 ||||| | |||||||||||||||| ||| |||| Sbjct: 843 ctttgcagacaaggctagaggcttcaaataatgt 876
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 391 bits (197), Expect = e-105 Identities = 341/389 (87%) Strand = Plus / Minus Query: 504 gcaaaaccacgggtgtacaatgatcctttcaataatccgttagtcaagatcgatgaaggt 563 |||||||| || |||||| ||||||||||||||||||| ||||||||||| ||||| | | Sbjct: 29516300 gcaaaaccccgagtgtacgatgatcctttcaataatccattagtcaagattgatgaggat 29516241 Query: 564 acttctactgctcaaatgtttggcaaggagtaccgcatggctcctgtccggcttacaaat 623 |||||||| |||||| ||||||||||||||||||| | ||||| | |||||||||| Sbjct: 29516240 acttctaccgctcaagtgtttggcaaggagtaccggcttgctcccattaggcttacaaaa 29516181 Query: 624 gaacaacagacaatgcatcagaaaaggcgatcacatgcatatcagtggaaaaggcccacc 683 |||||||| ||||||||||||||||| |||||| | | |||||||||||||||||||| Sbjct: 29516180 gaacaacaagcaatgcatcagaaaaggagatcacgtacgtatcagtggaaaaggcccact 29516121 Query: 684 gtgtttcttaaagaaggtgatcccctgccaccagatgtcgatccagagacagttagatgg 743 || |||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| Sbjct: 29516120 gtttttcttaaagaaggtgattccttgccaccagatgttgatccagatacagttagatgg 29516061 Query: 744 attccagtaaaccacccatttgctgctggttcagttgaagtagatgaggagactgccaaa 803 ||||| |||||||||||||||||||||| |||| |||||| |||||||||||||| ||| Sbjct: 29516060 attcccgtaaaccacccatttgctgctgcttcaactgaagtggatgaggagactgctaaa 29516001 Query: 804 aggaatgtttatcaaaaggatggtgtcccgtcccgtgttaaagccgaacatgaagctttg 863 |||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||| Sbjct: 29516000 caaaatgtttatcaaaaggatggggtcccatcccgtgtcaaagctgagcatgaagctttg 29515941 Query: 864 agggcaaggctagaggcttctaatgatgt 892 | |||||||||||||||| ||| |||| Sbjct: 29515940 cagacaaggctagaggcttcaaataatgt 29515912 Score = 111 bits (56), Expect = 6e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 199 cgaggtggccccgcccaatcagggcttcgagcggcacgagtggcgccccggacggggagc 258 ||||||||||||| ||||| ||||||||||||| | ||||||| | | ||||||| | Sbjct: 29517713 cgaggtggccccggccaattagggcttcgagcgacggtagtggcgtcgcaaacggggacc 29517654 Query: 259 ggaggatcggcgctctggagaggagggtgggggatttgagggcgcttgtcgcctcggtgc 318 ||| | |||| |||||||||||||||||||| ||| ||||||| | ||||||||||||| Sbjct: 29517653 ggaaggtcggggctctggagaggagggtgggagatctgagggctgtcgtcgcctcggtgc 29517594 Query: 319 cccctgctgttg 330 |||||||||||| Sbjct: 29517593 cccctgctgttg 29517582 Score = 63.9 bits (32), Expect = 1e-06 Identities = 134/168 (79%) Strand = Plus / Minus Query: 335 gatcaggaaaaacattggactaagttccgttgctggtttcggcttcggcattgcattttt 394 ||||| ||||||||||||||||| | ||||||| ||| | ||||||| || |||| Sbjct: 29517092 gatcaagaaaaacattggactaaactttattgctggattctgtctcggcatcacactttt 29517033 Query: 395 ggctgctgttgcaaggcaggttgtcataagaacgcaacaccaagataataatggttctgt 454 ||||||||||||||| ||||| |||| || | || | | || ||||| || ||||| Sbjct: 29517032 ggctgctgttgcaagacaggtcatcattaggattcatgagcgtgacaataaaggctctgt 29516973 Query: 455 tgctgatctagtaaggcgtgggcatctaaaatcagggcaacgtgggat 502 |||||| ||| |||||||||| || |||||||||| ||||||||||| Sbjct: 29516972 tgctgacctaataaggcgtggacaattaaaatcaggacaacgtgggat 29516925
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 391 bits (197), Expect = e-105 Identities = 341/389 (87%) Strand = Plus / Minus Query: 504 gcaaaaccacgggtgtacaatgatcctttcaataatccgttagtcaagatcgatgaaggt 563 |||||||| || |||||| ||||||||||||||||||| ||||||||||| ||||| | | Sbjct: 18989 gcaaaaccccgagtgtacgatgatcctttcaataatccattagtcaagattgatgaggat 18930 Query: 564 acttctactgctcaaatgtttggcaaggagtaccgcatggctcctgtccggcttacaaat 623 |||||||| |||||| ||||||||||||||||||| | ||||| | |||||||||| Sbjct: 18929 acttctaccgctcaagtgtttggcaaggagtaccggcttgctcccattaggcttacaaaa 18870 Query: 624 gaacaacagacaatgcatcagaaaaggcgatcacatgcatatcagtggaaaaggcccacc 683 |||||||| ||||||||||||||||| |||||| | | |||||||||||||||||||| Sbjct: 18869 gaacaacaagcaatgcatcagaaaaggagatcacgtacgtatcagtggaaaaggcccact 18810 Query: 684 gtgtttcttaaagaaggtgatcccctgccaccagatgtcgatccagagacagttagatgg 743 || |||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| Sbjct: 18809 gtttttcttaaagaaggtgattccttgccaccagatgttgatccagatacagttagatgg 18750 Query: 744 attccagtaaaccacccatttgctgctggttcagttgaagtagatgaggagactgccaaa 803 ||||| |||||||||||||||||||||| |||| |||||| |||||||||||||| ||| Sbjct: 18749 attcccgtaaaccacccatttgctgctgcttcaactgaagtggatgaggagactgctaaa 18690 Query: 804 aggaatgtttatcaaaaggatggtgtcccgtcccgtgttaaagccgaacatgaagctttg 863 |||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||| Sbjct: 18689 caaaatgtttatcaaaaggatggggtcccatcccgtgtcaaagctgagcatgaagctttg 18630 Query: 864 agggcaaggctagaggcttctaatgatgt 892 | |||||||||||||||| ||| |||| Sbjct: 18629 cagacaaggctagaggcttcaaataatgt 18601 Score = 111 bits (56), Expect = 6e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 199 cgaggtggccccgcccaatcagggcttcgagcggcacgagtggcgccccggacggggagc 258 ||||||||||||| ||||| ||||||||||||| | ||||||| | | ||||||| | Sbjct: 20402 cgaggtggccccggccaattagggcttcgagcgacggtagtggcgtcgcaaacggggacc 20343 Query: 259 ggaggatcggcgctctggagaggagggtgggggatttgagggcgcttgtcgcctcggtgc 318 ||| | |||| |||||||||||||||||||| ||| ||||||| | ||||||||||||| Sbjct: 20342 ggaaggtcggggctctggagaggagggtgggagatctgagggctgtcgtcgcctcggtgc 20283 Query: 319 cccctgctgttg 330 |||||||||||| Sbjct: 20282 cccctgctgttg 20271 Score = 63.9 bits (32), Expect = 1e-06 Identities = 134/168 (79%) Strand = Plus / Minus Query: 335 gatcaggaaaaacattggactaagttccgttgctggtttcggcttcggcattgcattttt 394 ||||| ||||||||||||||||| | ||||||| ||| | ||||||| || |||| Sbjct: 19781 gatcaagaaaaacattggactaaactttattgctggattctgtctcggcatcacactttt 19722 Query: 395 ggctgctgttgcaaggcaggttgtcataagaacgcaacaccaagataataatggttctgt 454 ||||||||||||||| ||||| |||| || | || | | || ||||| || ||||| Sbjct: 19721 ggctgctgttgcaagacaggtcatcattaggattcatgagcgtgacaataaaggctctgt 19662 Query: 455 tgctgatctagtaaggcgtgggcatctaaaatcagggcaacgtgggat 502 |||||| ||| |||||||||| || |||||||||| ||||||||||| Sbjct: 19661 tgctgacctaataaggcgtggacaattaaaatcaggacaacgtgggat 19614
>gb|AC117527.2| Homo sapiens chromosome 5 clone RP11-1A7, complete sequence Length = 167042 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cctccatccctccctgagcact 55 |||||||||||||||||||||| Sbjct: 133746 cctccatccctccctgagcact 133767
>gb|AC012315.5|AC012315 Homo sapiens chromosome 5 clone CTD-2122K7, complete sequence Length = 170216 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cctccatccctccctgagcact 55 |||||||||||||||||||||| Sbjct: 95289 cctccatccctccctgagcact 95310
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ctcccagagtcccagtcccag 74 ||||||||||||||||||||| Sbjct: 104979 ctcccagagtcccagtcccag 104999
>gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome 17, complete sequence Length = 150579 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ccctgcccctccatccctccctgag 51 ||||||||||||||||| ||||||| Sbjct: 85166 ccctgcccctccatcccgccctgag 85190
>ref|XM_822181.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.211.1290) partial mRNA Length = 1008 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 795 actgccaaaaggaatgtttat 815 ||||||||||||||||||||| Sbjct: 691 actgccaaaaggaatgtttat 711
>dbj|AK170523.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630106K16 product:zinc finger protein 523, full insert sequence Length = 4609 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ccctgcccctccatccctccctgag 51 ||||||||||||||||| ||||||| Sbjct: 290 ccctgcccctccatcccgccctgag 314
>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete sequence Length = 226856 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 ccctgcccctccatccctccctgag 51 ||||||||||||||||| ||||||| Sbjct: 185390 ccctgcccctccatcccgccctgag 185366
>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224566 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 862 tgagggcaaggctagaggcttctaa 886 ||||||||||||||||||| ||||| Sbjct: 23852 tgagggcaaggctagaggcatctaa 23876
>emb|BX950202.4| Zebrafish DNA sequence from clone CH211-14K8 in linkage group 24, complete sequence Length = 57600 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 ctactgctcaaatgtttggca 588 ||||||||||||||||||||| Sbjct: 3257 ctactgctcaaatgtttggca 3237
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 42.1 bits (21), Expect = 4.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 ttcctcctctgtcttctccgt 24 ||||||||||||||||||||| Sbjct: 13175 ttcctcctctgtcttctccgt 13155
>gb|AC135608.7| Mus musculus strain C57BL/6J clone rp23-408d14, complete sequence Length = 213801 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 862 tgagggcaaggctagaggcttctaa 886 ||||||||||||||||||| ||||| Sbjct: 90486 tgagggcaaggctagaggcatctaa 90510
>dbj|AK058633.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D01, full insert sequence Length = 509 Score = 42.1 bits (21), Expect = 4.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 852 catgaagctttgagggcaaggctagaggcttctaatgatgt 892 |||||||||||| | |||||||||||||||| ||| |||| Sbjct: 9 catgaagctttgcagacaaggctagaggcttcaaataatgt 49
>emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chromosome 17, complete sequence Length = 190153 Score = 42.1 bits (21), Expect = 4.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 ccctgcccctccatccctccctgag 51 ||||||||||||||||| ||||||| Sbjct: 55578 ccctgcccctccatcccgccctgag 55554 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 201,986,138 Number of extensions: 10541735 Number of successful extensions: 205349 Number of sequences better than 10.0: 17 Number of HSP's gapped: 205337 Number of HSP's successfully gapped: 25 Length of query: 1261 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1238 Effective length of database: 18,503,978,556 Effective search space: 22907925452328 Effective search space used: 22907925452328 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
