| Clone Name | FLbaf134m16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB206536.1| Hordeum vulgare HvIRO2 mRNA for basic helix-loop-helix protein, complete cds Length = 1290 Score = 2339 bits (1180), Expect = 0.0 Identities = 1220/1231 (99%), Gaps = 4/1231 (0%) Strand = Plus / Plus Query: 7 aagcagctgactccatacatcaaaccctgccatgagaagtagttaatgcttttaagtgtt 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aagcagctgactccatacatcaaaccctgccatgagaagtagttaatgcttttaagtgtt 60 Query: 67 catcacaaataaaattccattagctcggagagggtcttcccctaccactaggctactact 126 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 61 catcacaaataaaattccattagctcggagagg-tcttcccctaccactaggctactact 119 Query: 127 tcctcttcatctagcgtattaccaagaataatgtcattcattagcagctagaagactaga 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 tcctcttcatctagcgtattaccaagaataatgtcattcattagcagctagaagactaga 179 Query: 187 ctagatagcgcggtggttaggttgctaattaagctaggttgtctccctct--ctctcatc 244 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 180 ctagatagcgcggtggttaggttgctaattaagctaggttgtctccctctctctctcatc 239 Query: 245 caccatcatccccaattctccacacgaactcgatcgaccagataatctacctgctgcgag 304 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 240 caccatcatccccaattctccacacgaactcgatcgaccagagaatctacctgctgcgag 299 Query: 305 caatggggcaccagacccagatgttcgacgacccgttcgcgagcagtatgtcgtccctgg 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 caatggggcaccagacccagatgttcgacgacccgttcgcgagcagtatgtcgtccctgg 359 Query: 365 acgcagacatcttctccgtcgccggcggcctccacccatcgcagtggccgggactcgacc 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 acgcagacatcttctccgtcgccggcggcctccacccatcgcagtggccgggactcgacc 419 Query: 425 acgacgtctcgctggcgccggctgccaacaacggcacctcctccggcggctacggctccc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 acgacgtctcgctggcgccggctgccaacaacggcacctcctccggcggctacggctccc 479 Query: 485 ccgggggcggcgatggctcgggctcccaccgcaagatcagccacaacgcgtacgagcgcg 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 ccgggggcggcgatggctcgggctcccaccgcaagatcagccacaacgcgtacgagcgcg 539 Query: 545 accgccgcaagcagctcaacgagctctactccgacctccgctccctcctccccgactccg 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 accgccgcaagcagctcaacgagctctactccgacctccgctccctcctccccgactccg 599 Query: 605 atcacaccaagaagctgagcattccgatcacggtgtcgcgggtgctcaagtacatcccgg 664 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 600 atcacaccaagaagctgagcattccgatcacggtgtcgcgcgtgctcaagtacatcccgg 659 Query: 665 agctgcagaagcaggtggacggactggagaagaagaaggaggagcttacgagggccagct 724 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 660 agctgcagaagcaggtggacggactggagaagaagaaggaggagcttacgcgggccagct 719 Query: 725 gcaagccaggcgtattgaccatgaaggagaacacggtcccgatcgtgtccgccacctgcc 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 gcaagccaggcgtattgaccatgaaggagaacacggtcccgatcgtgtccgccacctgcc 779 Query: 785 tcgacgaaagggagatcatggtccaggttagcttggtgagcaccatggccggagctctgc 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 780 tcgacgaaagggagatcatggtccaggttagcttggtgagcaccatggccggagctctgc 839 Query: 845 ccatgtccaagtgcatcaaagtgctggagaacgaaggcctccgcctcatcagctcgtcca 904 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ccatgtccaagcgcatcaaagtgctggagaacgaaggcctccgcctcatcagctcgtcca 899 Query: 905 cttctgctttccagaacaggacgttctatagcctccatcttcagagaacccaacggacga 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 cttctgctttccagaacaggacgttctatagcctccatcttcagagaacccaacggacga 959 Query: 965 tgagcaaagagtgtccggcattttgtgaagaactggagaatgccctgacgcagaaggcgg 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tgagcaaagagtgtccggcattttgtgaagaactggagaatgccctgacgcagaaggcgg 1019 Query: 1025 gactacgtctacatcaccagtagattatatgtagcagaataatggtgtatattgtcttgt 1084 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 g-gtacgtctacatcaccagtagattatatgtagcagaataatggtgtatattgtcttgt 1078 Query: 1085 ttaaccaccatgactcaaaatgcatgcataccatagatataggacatatacctaagataa 1144 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1079 ttamccmccatgactcaaaatgcatgcataccatagatataggacatatacctaagataa 1138 Query: 1145 atagtagtgttgatatgcatgcttcatggtacgtacagtgcagcgtgttccatatctagt 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1139 atagtagtgttgatatgcatgcttcatggtacgtacagtgcagcgtgttccatatctagt 1198 Query: 1205 aattatgaatgtatgtatatacatttctatg 1235 ||||||||||||||||||||||||||||||| Sbjct: 1199 aattatgaatgtatgtatatacatttctatg 1229
>emb|CT833598.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042K05, full insert sequence Length = 1986 Score = 210 bits (106), Expect = 9e-51 Identities = 181/206 (87%) Strand = Plus / Plus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 387 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 446 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacaccaagaagctgagc 624 |||||||||||| |||||| | |||||||||||| |||||||||| |||||||||||| Sbjct: 447 gagctctactcctcgctccgcgctctcctccccgacgccgatcacactaagaagctgagc 506 Query: 625 attccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcagaagcaggtggac 684 || |||| |||||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 507 atcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcagaagcaggtggag 566 Query: 685 ggactggagaagaagaaggaggagct 710 ||||||| ||||||| ||||||| Sbjct: 567 aatctggagaggaagaagaaggagct 592 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 219 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 269 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Plus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 753 tccaagtgtatcaaagtactggagaacgaagg 784
>emb|CT833597.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113H03, full insert sequence Length = 1195 Score = 210 bits (106), Expect = 9e-51 Identities = 181/206 (87%) Strand = Plus / Plus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 392 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 451 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacaccaagaagctgagc 624 |||||||||||| |||||| | |||||||||||| |||||||||| |||||||||||| Sbjct: 452 gagctctactcctcgctccgcgctctcctccccgacgccgatcacactaagaagctgagc 511 Query: 625 attccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcagaagcaggtggac 684 || |||| |||||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 512 atcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcagaagcaggtggag 571 Query: 685 ggactggagaagaagaaggaggagct 710 ||||||| ||||||| ||||||| Sbjct: 572 aatctggagaggaagaagaaggagct 597 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 224 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 274 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Plus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 758 tccaagtgtatcaaagtactggagaacgaagg 789
>ref|NM_001051959.1| Oryza sativa (japonica cultivar-group) Os01g0952800 (Os01g0952800) mRNA, complete cds Length = 2378 Score = 192 bits (97), Expect = 2e-45 Identities = 183/211 (86%), Gaps = 3/211 (1%) Strand = Plus / Plus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 400 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 459 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacaccaagaagctgagc 624 |||||||||||| ||||||| | |||||||||||| |||||||||| ||||||||| Sbjct: 460 gagctctactcctccctccgcgctctcctccccgacgccgatcacac---taagctgagc 516 Query: 625 attccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcagaagcaggtggac 684 || |||| |||||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 517 atcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcagaagcaggtggag 576 Query: 685 ggactggagaagaagaaggaggagcttacga 715 ||||||| ||||||| ||||||| |||| Sbjct: 577 aatctggagaggaagaagaaggagctgacga 607 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 235 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 285 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Plus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 763 tccaagtgtatcaaagtactggagaacgaagg 794
>dbj|AK073385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041D19, full insert sequence Length = 2378 Score = 176 bits (89), Expect = 1e-40 Identities = 181/211 (85%), Gaps = 3/211 (1%) Strand = Plus / Plus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 402 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 461 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacaccaagaagctgagc 624 ||||||||||| ||||||| | ||| |||||||| |||||||||| ||||||||| Sbjct: 462 aagctctactcctccctccgcgctctcatccccgacgccgatcacac---taagctgagc 518 Query: 625 attccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcagaagcaggtggac 684 || |||| |||||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 519 atcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcagaagcaggtggag 578 Query: 685 ggactggagaagaagaaggaggagcttacga 715 ||||||| ||||||| ||||||| |||| Sbjct: 579 aatctggagaggaagaagaaggagctgacga 609 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 237 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 287 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Plus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 765 tccaagtgtatcaaagtactggagaacgaagg 796
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 133 bits (67), Expect = 2e-27 Identities = 97/107 (90%) Strand = Plus / Minus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 41970053 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 41969994 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacac 611 |||||||||||| ||||||| | |||||||||||| |||||||||| Sbjct: 41969993 gagctctactcctccctccgcgctctcctccccgacgccgatcacac 41969947 Score = 93.7 bits (47), Expect = 1e-15 Identities = 89/103 (86%) Strand = Plus / Minus Query: 613 aagaagctgagcattccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcag 672 |||||||||||||| |||| |||||||| || |||||||||||||| || ||||||||| Sbjct: 41969858 aagaagctgagcatcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcag 41969799 Query: 673 aagcaggtggacggactggagaagaagaaggaggagcttacga 715 ||||||||||| ||||||| ||||||| ||||||| |||| Sbjct: 41969798 aagcaggtggagaatctggagaggaagaagaaggagctgacga 41969756 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Minus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 41970218 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 41970168 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Minus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 41969600 tccaagtgtatcaaagtactggagaacgaagg 41969569 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 576 cgacctccgctccctcctccccgactccga 605 ||||||||||||||||||| ||||| |||| Sbjct: 14042787 cgacctccgctccctcctcgccgacgccga 14042816
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 133 bits (67), Expect = 2e-27 Identities = 97/107 (90%) Strand = Plus / Minus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 72130 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 72071 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacac 611 |||||||||||| ||||||| | |||||||||||| |||||||||| Sbjct: 72070 gagctctactcctccctccgcgctctcctccccgacgccgatcacac 72024 Score = 93.7 bits (47), Expect = 1e-15 Identities = 89/103 (86%) Strand = Plus / Minus Query: 613 aagaagctgagcattccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcag 672 |||||||||||||| |||| |||||||| || |||||||||||||| || ||||||||| Sbjct: 71935 aagaagctgagcatcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcag 71876 Query: 673 aagcaggtggacggactggagaagaagaaggaggagcttacga 715 ||||||||||| ||||||| ||||||| ||||||| |||| Sbjct: 71875 aagcaggtggagaatctggagaggaagaagaaggagctgacga 71833 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Minus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 72295 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 72245 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Minus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 71677 tccaagtgtatcaaagtactggagaacgaagg 71646
>emb|CT834411.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105K20, full insert sequence Length = 1321 Score = 125 bits (63), Expect = 4e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 505 ggctcccaccgcaagatcagccacaacgcgtacgagcgcgaccgccgcaagcagctcaac 564 ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 398 ggctcccacaggaagctcagccacaacgcctacgagcgcgaccgccggaagcagctcaac 457 Query: 565 gagctctactccgacctccgctccctcctccccgactccgatcacac 611 |||||||||||| |||||| | |||||||||||| |||||||||| Sbjct: 458 gagctctactcctcgctccgcgctctcctccccgacgccgatcacac 504 Score = 91.7 bits (46), Expect = 6e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 613 aagaagctgagcattccgatcacggtgtcgcgggtgctcaagtacatcccggagctgcag 672 |||||||||||||| |||| |||||||| || |||||||||||||| || ||||||||| Sbjct: 593 aagaagctgagcatcccgacgacggtgtctcgcgtgctcaagtacatacccgagctgcag 652 Query: 673 aagcaggtggacggactggagaagaagaaggaggagct 710 ||||||||||| ||||||| ||||||| ||||||| Sbjct: 653 aagcaggtggagaatctggagaggaagaagaaggagct 690 Score = 54.0 bits (27), Expect = 0.001 Identities = 45/51 (88%) Strand = Plus / Plus Query: 340 ttcgcgagcagtatgtcgtccctggacgcagacatcttctccgtcgccggc 390 ||||||||||| |||||||| || || || ||||||||||||| ||||||| Sbjct: 230 ttcgcgagcagcatgtcgtcgcttgaggcggacatcttctccggcgccggc 280 Score = 48.1 bits (24), Expect = 0.077 Identities = 30/32 (93%) Strand = Plus / Plus Query: 850 tccaagtgcatcaaagtgctggagaacgaagg 881 |||||||| |||||||| |||||||||||||| Sbjct: 850 tccaagtgtatcaaagtactggagaacgaagg 881
>gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome 10, complete sequence Length = 232473 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1208 tatgaatgtatgtatatacattt 1230 ||||||||||||||||||||||| Sbjct: 61761 tatgaatgtatgtatatacattt 61783
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 628 ccgatcacggtgtcgcgggtgct 650 ||||||||||||||||||||||| Sbjct: 4414608 ccgatcacggtgtcgcgggtgct 4414586
>gb|AC079444.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-395k5, complete sequence Length = 171451 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1208 tatgaatgtatgtatatacattt 1230 ||||||||||||||||||||||| Sbjct: 50108 tatgaatgtatgtatatacattt 50086
>gb|AC191645.2| Gallus gallus BAC clone CH261-144L11 from chromosome z, complete sequence Length = 207583 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 739 ttgaccatgaaggagaacacgg 760 |||||||||||||||||||||| Sbjct: 79896 ttgaccatgaaggagaacacgg 79875
>ref|XM_001224078.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04865) mRNA, complete cds Length = 1008 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 662 cggagctgcagaagcaggtgga 683 |||||||||||||||||||||| Sbjct: 308 cggagctgcagaagcaggtgga 329
>ref|NM_001049520.1| Oryza sativa (japonica cultivar-group) Os01g0351300 (Os01g0351300) mRNA, complete cds Length = 3039 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 576 cgacctccgctccctcctccccgactccga 605 ||||||||||||||||||| ||||| |||| Sbjct: 306 cgacctccgctccctcctcgccgacgccga 335
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1003 aatgccctgacgcagaaggcgg 1024 |||||||||||||||||||||| Sbjct: 4544883 aatgccctgacgcagaaggcgg 4544862 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 cgtcgccggcggcctccaccc 401 ||||||||||||||||||||| Sbjct: 305800 cgtcgccggcggcctccaccc 305820
>ref|XM_981583.1| PREDICTED: Mus musculus guanylate cyclase 1, soluble, beta 2 (Gucy1b2), mRNA Length = 2482 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 687 actggagaagaagaaggaggag 708 |||||||||||||||||||||| Sbjct: 1579 actggagaagaagaaggaggag 1600
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence Length = 195935 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 687 actggagaagaagaaggaggag 708 |||||||||||||||||||||| Sbjct: 59136 actggagaagaagaaggaggag 59115
>gb|AY236513.1| Mus musculus nitric oxide sensitive guanylyl cyclase beta2 subunit (Gucy1b2) mRNA, complete cds Length = 2240 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 687 actggagaagaagaaggaggag 708 |||||||||||||||||||||| Sbjct: 1253 actggagaagaagaaggaggag 1274
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1196 atatctagtaattatgaatgtatgtatata 1225 |||| |||| |||||||||||||||||||| Sbjct: 62513 atatatagttattatgaatgtatgtatata 62542
>ref|NM_172810.1| Mus musculus guanylate cyclase 1, soluble, beta 2 (Gucy1b2), mRNA dbj|AK047129.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930025B03 product:SOLUBLE GUANYLYL CYCLASE BETA 2 SUBUNIT homolog [Rattus norvegicus], full insert sequence Length = 2712 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 687 actggagaagaagaaggaggag 708 |||||||||||||||||||||| Sbjct: 1580 actggagaagaagaaggaggag 1601
>dbj|AK084590.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330018D10 product:unclassifiable, full insert sequence Length = 1127 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1213 atgtatgtatatacatttctat 1234 |||||||||||||||||||||| Sbjct: 942 atgtatgtatatacatttctat 921
>dbj|AK087271.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030040P19 product:unclassifiable, full insert sequence Length = 1277 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1213 atgtatgtatatacatttctat 1234 |||||||||||||||||||||| Sbjct: 956 atgtatgtatatacatttctat 935
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 538 gagcgcgaccgccgcaagcagctcaacgag 567 ||||| ||||||||||||| |||||||||| Sbjct: 13452284 gagcgggaccgccgcaagcggctcaacgag 13452255
>gb|AC154805.2| Mus musculus BAC clone RP24-511O23 from chromosome 14, complete sequence Length = 151445 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 687 actggagaagaagaaggaggag 708 |||||||||||||||||||||| Sbjct: 150684 actggagaagaagaaggaggag 150663
>emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence Length = 118791 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Minus Query: 538 gagcgcgaccgccgcaagcagctcaacgag 567 ||||| ||||||||||||| |||||||||| Sbjct: 88640 gagcgggaccgccgcaagcggctcaacgag 88611
>gb|AC154610.3| Mus musculus BAC clone RP23-335A11 from chromosome 13, complete sequence Length = 201893 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1213 atgtatgtatatacatttctat 1234 |||||||||||||||||||||| Sbjct: 19337 atgtatgtatatacatttctat 19316
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 576 cgacctccgctccctcctccccgactccga 605 ||||||||||||||||||| ||||| |||| Sbjct: 203089 cgacctccgctccctcctcgccgacgccga 203118
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 576 cgacctccgctccctcctccccgactccga 605 ||||||||||||||||||| ||||| |||| Sbjct: 118532 cgacctccgctccctcctcgccgacgccga 118561
>dbj|AK102963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115I11, full insert sequence Length = 3046 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 576 cgacctccgctccctcctccccgactccga 605 ||||||||||||||||||| ||||| |||| Sbjct: 311 cgacctccgctccctcctcgccgacgccga 340
>gb|AC123709.9| Mus musculus chromosome 13, clone RP23-375O18, complete sequence Length = 99670 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1213 atgtatgtatatacatttctat 1234 |||||||||||||||||||||| Sbjct: 8262 atgtatgtatatacatttctat 8283
>ref|XM_426243.2| PREDICTED: Gallus gallus similar to Cerebellar degeneration-related protein 2-like (LOC428685), mRNA Length = 3109 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 663 ggagctgcagaagcaggtgga 683 ||||||||||||||||||||| Sbjct: 363 ggagctgcagaagcaggtgga 383
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 420 cgaccacgacgtctcgctggcgccg 444 |||||||| |||||||||||||||| Sbjct: 2532753 cgaccacggcgtctcgctggcgccg 2532729
>ref|NM_105555.2| Arabidopsis thaliana DNA binding / transcription factor (AT1G68810) mRNA, complete cds Length = 1470 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 452 ctggagaagaagaaggaggag 432
>gb|AC121946.3| Mus musculus BAC clone RP24-212F15 from chromosome 10, complete sequence Length = 181828 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 687 actggagaagaagaaggagga 707 ||||||||||||||||||||| Sbjct: 136529 actggagaagaagaaggagga 136549
>gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, complete sequence Length = 175241 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1209 atgaatgtatgtatatacatttcta 1233 |||||| |||||||||||||||||| Sbjct: 146812 atgaatatatgtatatacatttcta 146836
>ref|XM_381493.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01317.1) partial mRNA Length = 762 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 gagaagaagaaggaggagctt 711 ||||||||||||||||||||| Sbjct: 424 gagaagaagaaggaggagctt 444
>gb|AY122983.1| Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds Length = 1138 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 286 ctggagaagaagaaggaggag 266
>gb|AY072161.1| Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds Length = 1486 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 453 ctggagaagaagaaggaggag 433
>gb|AC154399.5| Mus musculus chromosome 3, clone RP24-295P14, complete sequence Length = 165984 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1209 atgaatgtatgtatatacatttcta 1233 |||||| |||||||||||||||||| Sbjct: 38164 atgaatatatgtatatacatttcta 38188
>gb|AC092668.2| Homo sapiens BAC clone RP11-553F8 from 4, complete sequence Length = 167570 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1208 tatgaatgtatgtatatacat 1228 ||||||||||||||||||||| Sbjct: 79186 tatgaatgtatgtatatacat 79206
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 578 acctccgctccctcctccccgactccgat 606 ||||||||||||||||| ||||| ||||| Sbjct: 18963126 acctccgctccctcctcgccgacgccgat 18963154
>gb|AC040918.7| Homo sapiens chromosome 15, clone RP11-684B21, complete sequence Length = 175919 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1208 tatgaatgtatgtatatacatttct 1232 |||| |||||||||||||||||||| Sbjct: 132870 tatgtatgtatgtatatacatttct 132894
>emb|AL390788.15| Human DNA sequence from clone RP11-384P5 on chromosome 9, complete sequence Length = 136968 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1208 tatgaatgtatgtatatacatttct 1232 ||||||||||| ||||||||||||| Sbjct: 321 tatgaatgtatttatatacatttct 345
>emb|AL354937.12| Human DNA sequence from clone RP11-50K12 on chromosome 9 Contains a novel pseuodgene, complete sequence Length = 164276 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1208 tatgaatgtatgtatatacatttct 1232 ||||||||||| ||||||||||||| Sbjct: 162597 tatgaatgtatttatatacatttct 162621
>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete sequence Length = 194230 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1207 ttatgaatgtatgtatataca 1227 ||||||||||||||||||||| Sbjct: 58630 ttatgaatgtatgtatataca 58610
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 690 ggagaagaagaaggaggagct 710 ||||||||||||||||||||| Sbjct: 2451081 ggagaagaagaaggaggagct 2451101
>emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chromosome 11 Contains two novel genes, the Chrne gene for cholinergic receptor nicotinic epsilon polypeptide, genes 4930544D05Rik, C730027E14Rik and LOC327956, the gene for mitogen-activated protein kinase kinase kinase kinase 6 (Map4k6-pending), the Pld2 gene for phospholipase D2, the Psmb6 gene for proteasome (prosome, macropain) subunit beta type 6, a ribosomal protein L34 pseudogene, the 3' end of gene 2010003F10Rik and three CpG islands, complete sequence Length = 123943 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1207 ttatgaatgtatgtatataca 1227 ||||||||||||||||||||| Sbjct: 97929 ttatgaatgtatgtatataca 97949
>gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete sequence Length = 114637 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 ttcatcacaaataaaattcca 85 ||||||||||||||||||||| Sbjct: 45646 ttcatcacaaataaaattcca 45666
>gb|AC011914.9|AC011914 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence Length = 96808 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 35914 ctggagaagaagaaggaggag 35934
>gb|AC011665.8|AC011665 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence Length = 100515 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 3214 ctggagaagaagaaggaggag 3194
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0009J19 Length = 156988 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 578 acctccgctccctcctccccgactccgat 606 ||||||||||||||||| ||||| ||||| Sbjct: 55796 acctccgctccctcctcgccgacgccgat 55824
>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485D10 Length = 147464 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 578 acctccgctccctcctccccgactccgat 606 ||||||||||||||||| ||||| ||||| Sbjct: 128691 acctccgctccctcctcgccgacgccgat 128719
>emb|BX814146.1|CNS0AC3F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZC04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1369 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 440 ctggagaagaagaaggaggag 420
>emb|BX817265.1|CNS0ABQW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH9ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1497 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 ctggagaagaagaaggaggag 708 ||||||||||||||||||||| Sbjct: 438 ctggagaagaagaaggaggag 418
>gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete sequence Length = 233833 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 tctccctctctctcatccacc 248 ||||||||||||||||||||| Sbjct: 129295 tctccctctctctcatccacc 129275
>emb|AL683857.8| Mouse DNA sequence from clone RP23-46O18 on chromosome X, complete sequence Length = 238677 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ttttaagtgttcatcacaaataaaa 80 ||||||||||| ||||||||||||| Sbjct: 39317 ttttaagtgttaatcacaaataaaa 39341
>gb|AC107237.7| Mus musculus chromosome 3, clone RP23-475B9, complete sequence Length = 173716 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1209 atgaatgtatgtatatacatttcta 1233 |||||| |||||||||||||||||| Sbjct: 108320 atgaatatatgtatatacatttcta 108296 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 207,438,799 Number of extensions: 13192141 Number of successful extensions: 351528 Number of sequences better than 10.0: 57 Number of HSP's gapped: 351523 Number of HSP's successfully gapped: 76 Length of query: 1250 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1227 Effective length of database: 18,503,978,556 Effective search space: 22704381688212 Effective search space used: 22704381688212 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)