Clone Information

BLAST Search Result

Clone Name	FLbaf134m12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001069361.1\| Oryza sativa (japonica cultivar-group) Os09g...	321	3e-84
2	dbj\|AK066404.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	321	3e-84
3	gb\|AY110515.1\| Zea mays CL34314_1 mRNA sequence	317	5e-83
4	dbj\|AK062197.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	260	9e-66
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	1e-24
6	dbj\|AP006235.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	1e-24
7	dbj\|AP005912.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	1e-24
8	gb\|DQ370129.1\| Pinus monticola open stomata 1 (OST1) gene, parti...	46	0.26
9	gb\|DQ370128.1\| Pinus thunbergii open stomata 1 (OST1) gene, part...	46	0.26
10	gb\|DQ370127.1\| Pinus taeda open stomata 1 (OST1) gene, partial cds	46	0.26
11	emb\|AJ271796.1\|ZMA271796 Zea mays mRNA for plasma membrane intri...	46	0.26
12	gb\|AF326489.1\|AF326489 Zea mays plasma membrane integral protein...	46	0.26
13	gb\|AC145325.3\| Oryza sativa (japonica cultivar-group) chromosome...	44	1.0
14	gb\|AC114045.5\| Rattus norvegicus 20 BAC CH230-187J1 (Children's ...	44	1.0
15	gb\|AC113475.12\| Mus musculus chromosome 12, clone RP23-304B1, co...	44	1.0
16	gb\|AC113979.8\| Mus musculus chromosome 12, clone RP23-478I20, co...	44	1.0
17	gb\|AC141112.7\| Medicago truncatula clone mth2-15m12, complete se...	44	1.0
18	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	1.0
19	emb\|BX571792.9\| Zebrafish DNA sequence from clone CH211-177D9 in...	44	1.0
20	gb\|CP000480.1\| Mycobacterium smegmatis str. MC2 155, complete ge...	42	4.1
21	emb\|CT573308.6\| Zebrafish DNA sequence from clone CH73-68B9 in l...	42	4.1
22	emb\|CR855111.1\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	42	4.1
23	ref\|NM_001074449.1\| Oryza sativa (japonica cultivar-group) Os11g...	42	4.1
24	emb\|CR854899.16\| Zebrafish DNA sequence from clone CH211-268B14 ...	42	4.1
25	gb\|AC164647.3\| Mus musculus BAC clone RP23-463P13 from chromosom...	42	4.1
26	gb\|AC166346.5\| Mus musculus BAC clone RP24-83P13 from chromosome...	42	4.1
27	gb\|AC166832.2\| Mus musculus BAC clone RP23-220N17 from chromosom...	42	4.1
28	gb\|AC116768.9\| Mus musculus chromosome 8, clone RP23-395P10, com...	42	4.1
29	gb\|AF115465.1\| Leishmania donovani 28S ribosomal RNA subunit bet...	42	4.1
30	gb\|AC148759.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	4.1
31	gb\|AY631857.1\| Pennisetum glaucum teosinte-branched one (tb1) ge...	42	4.1
32	ref\|XM_870940.1\| PREDICTED: Bos taurus similar to immunoglobulin...	42	4.1
33	gb\|AC150540.2\| Bos taurus BAC CH240-385H19 (Children's Hospital...	42	4.1
34	gb\|AC137745.4\| Oryza sativa (japonica cultivar-group) chromosome...	42	4.1
35	gb\|AF139593.2\| Xanthobacter autotrophicus outer membrane recepto...	42	4.1
36	gb\|AC125466.4\| Mus musculus BAC clone RP23-477O24 from chromosom...	42	4.1
37	gb\|AC153499.7\| Mus musculus 10 BAC RP23-478J15 (Roswell Park Can...	42	4.1
38	dbj\|AK085259.1\| Mus musculus 0 day neonate kidney cDNA, RIKEN fu...	42	4.1
39	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	4.1
40	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	4.1
41	gb\|AC079874.21\| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen...	42	4.1
42	gb\|AC079890.13\| Oryza sativa chromosome 10 BAC OSJNBb0089A17 gen...	42	4.1
43	emb\|AL731642.3\|OSJN00289 Oryza sativa genomic DNA, chromosome 4,...	42	4.1
44	emb\|CR391929.9\| Zebrafish DNA sequence from clone DKEYP-86B5, co...	42	4.1
45	emb\|BX248396.10\| Zebrafish DNA sequence from clone CH211-219M13,...	42	4.1
46	dbj\|AK106341.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	4.1
47	emb\|AL591411.14\| Mouse DNA sequence from clone RP23-428M13 on ch...	42	4.1
48	gb\|AC170999.2\| Mus musculus BAC clone RP23-443L17 from chromosom...	42	4.1
49	gb\|AC163692.4\| Mus musculus BAC clone RP24-68H1 from chromosome ...	42	4.1

>ref|NM_001069361.1| Oryza sativa (japonica cultivar-group) Os09g0307300 (Os09g0307300)
           mRNA, complete cds
          Length = 1819
 Score =  321 bits (162), Expect = 3e-84
 Identities = 275/312 (88%), Gaps = 3/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggtcaagactcggcaactcatgatgaaagcaaacgccgttctccaacttcacaaacctca 287
           ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||| || 
Sbjct: 246 ggtcaagactcgataactctggatgaaagcaaacgccgttctccaacttcacaaacatcg 305

                                                                       
Query: 288 cccaagagatcgaca---aagcacgagcaaccactgagctactgcaggcttcacaccgag 344
           |||||||||||  ||   || |||||||||||||||||||||| |||||||||||| |||
Sbjct: 306 cccaagagatcatcaccaaaacacgagcaaccactgagctacttcaggcttcacactgag 365

                                                                       
Query: 345 gagcgggccataaggcgagctggttacaattaccagattgcaagcaagataaataccgag 404
           ||| | || |||| ||||||||||| ||| || ||| |||||||||||||||||||| | 
Sbjct: 366 gagagagcaataaagcgagctggtttcaactatcaggttgcaagcaagataaataccaat 425

                                                                       
Query: 405 gaaattattcggagatttgaggacaagttatcacaggtgatggaggagcgtgaaatcaag 464
           ||||||||||| ||||| ||||| ||||||||| ||||||| |||||||| || ||||||
Sbjct: 426 gaaattattcgcagattcgaggagaagttatcaaaggtgatagaggagcgcgagatcaag 485

                                                                       
Query: 465 ctgatgaggaaggagatggttccaaaggcccaacttatgccagcatttgacaagccattc 524
            |||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| 
Sbjct: 486 atgatgaggaaggagatggttcacaaggcccaactcatgccagcgtttgacaagccattt 545

                       
Query: 525 cacccacaaagg 536
           ||||||||||||
Sbjct: 546 cacccacaaagg 557



 Score = 77.8 bits (39), Expect = 7e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                        
Query: 534  aggtcgaggaggcccctcaccgtccccaaggagccgagcttcctgaggctcaagtgctgc 593
            ||||||| ||||||||| ||||| || |||||||| |||||||||||||| || ||||||
Sbjct: 1311 aggtcgacgaggcccctgaccgttccaaaggagcccagcttcctgaggctgaaatgctgc 1370

                                               
Query: 594  atcggcggcgagttccaccgccacttctgctacaa 628
            || || || ||||| || ||||| || ||||||||
Sbjct: 1371 attggaggagagtttcatcgccatttttgctacaa 1405



 Score = 61.9 bits (31), Expect = 4e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 78  atggagaaggcaaggaaggccacctcccctaagagctca 116
           ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 90  atggaaaagacaaggaaggccacctcccctaagagctca 128

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>dbj|AK066404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060B12, full
           insert sequence
          Length = 1820

 Score =  321 bits (162), Expect = 3e-84
 Identities = 275/312 (88%), Gaps = 3/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggtcaagactcggcaactcatgatgaaagcaaacgccgttctccaacttcacaaacctca 287
           ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 ggtcaagactcgataactctggatgaaagcaaacgccgttctccaacttcacaaacatcg 306

                                                                       
Query: 288 cccaagagatcgaca---aagcacgagcaaccactgagctactgcaggcttcacaccgag 344
           |||||||||||  ||   || |||||||||||||||||||||| |||||||||||| |||
Sbjct: 307 cccaagagatcatcaccaaaacacgagcaaccactgagctacttcaggcttcacactgag 366

                                                                       
Query: 345 gagcgggccataaggcgagctggttacaattaccagattgcaagcaagataaataccgag 404
           ||| | || |||| ||||||||||| ||| || ||| |||||||||||||||||||| | 
Sbjct: 367 gagagagcaataaagcgagctggtttcaactatcaggttgcaagcaagataaataccaat 426

                                                                       
Query: 405 gaaattattcggagatttgaggacaagttatcacaggtgatggaggagcgtgaaatcaag 464
           ||||||||||| ||||| ||||| ||||||||| ||||||| |||||||| || ||||||
Sbjct: 427 gaaattattcgcagattcgaggagaagttatcaaaggtgatagaggagcgcgagatcaag 486

                                                                       
Query: 465 ctgatgaggaaggagatggttccaaaggcccaacttatgccagcatttgacaagccattc 524
            |||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| 
Sbjct: 487 atgatgaggaaggagatggttcacaaggcccaactcatgccagcgtttgacaagccattt 546

                       
Query: 525 cacccacaaagg 536
           ||||||||||||
Sbjct: 547 cacccacaaagg 558



 Score = 77.8 bits (39), Expect = 7e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                        
Query: 534  aggtcgaggaggcccctcaccgtccccaaggagccgagcttcctgaggctcaagtgctgc 593
            ||||||| ||||||||| ||||| || |||||||| |||||||||||||| || ||||||
Sbjct: 1312 aggtcgacgaggcccctgaccgttccaaaggagcccagcttcctgaggctgaaatgctgc 1371

                                               
Query: 594  atcggcggcgagttccaccgccacttctgctacaa 628
            || || || ||||| || ||||| || ||||||||
Sbjct: 1372 attggaggagagtttcatcgccatttttgctacaa 1406



 Score = 61.9 bits (31), Expect = 4e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 78  atggagaaggcaaggaaggccacctcccctaagagctca 116
           ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 91  atggaaaagacaaggaaggccacctcccctaagagctca 129

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>gb|AY110515.1| Zea mays CL34314_1 mRNA sequence
          Length = 1060

 Score =  317 bits (160), Expect = 5e-83
 Identities = 295/340 (86%)
 Strand = Plus / Plus

                                                                       
Query: 277 cacaaacctcacccaagagatcgacaaagcacgagcaaccactgagctactgcaggcttc 336
           ||||||||||||||||||||||  | |  ||||| ||||| |||||||||  |||||| |
Sbjct: 299 cacaaacctcacccaagagatcaccgagacacgaacaacccctgagctacaacaggctcc 358

                                                                       
Query: 337 acaccgaggagcgggccataaggcgagctggttacaattaccagattgcaagcaagataa 396
           |||| |||||| | || |||||||| ||||| |||||||| ||| |||||||||||||||
Sbjct: 359 acacagaggagagagcaataaggcgggctggctacaattatcaggttgcaagcaagataa 418

                                                                       
Query: 397 ataccgaggaaattattcggagatttgaggacaagttatcacaggtgatggaggagcgtg 456
           ||||| ||||||| ||||| |||||||| || ||| |  ||||| ||||||||||||| |
Sbjct: 419 atacccaggaaatcattcgcagatttgaagagaagcttgcacagttgatggaggagcgcg 478

                                                                       
Query: 457 aaatcaagctgatgaggaaggagatggttccaaaggcccaacttatgccagcatttgaca 516
           | || ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 479 agataaagctgatgaggaaggatatggttcccaaggcccaactgatgccagcatttgaca 538

                                                                       
Query: 517 agccattccacccacaaaggtcgaggaggcccctcaccgtccccaaggagccgagcttcc 576
           |||||||||||||||||||||||| |||||| || || || || ||||||||||| ||||
Sbjct: 539 agccattccacccacaaaggtcgacgaggcctctgacggtgccaaaggagccgagtttcc 598

                                                   
Query: 577 tgaggctcaagtgctgcatcggcggcgagttccaccgcca 616
           ||||||| || ||||||||||| || |||||||| |||||
Sbjct: 599 tgaggctgaaatgctgcatcggtggggagttccatcgcca 638



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 71/84 (84%), Gaps = 3/84 (3%)
 Strand = Plus / Plus

                                                                       
Query: 62  atccatggctagagagatggagaaggcaaggaaggcca---cctcccctaagagctcatc 118
           ||||||||| ||||| ||||||||||||| ||||||||   | ||||||||||||||| |
Sbjct: 60  atccatggccagagaaatggagaaggcaaagaaggccacatcttcccctaagagctcaac 119

                                   
Query: 119 aactagttcaggtccgaaaagccc 142
           || |||| | ||||| || |||||
Sbjct: 120 aattagtactggtcccaagagccc 143

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>dbj|AK062197.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-G01, full
           insert sequence
          Length = 668

 Score =  260 bits (131), Expect = 9e-66
 Identities = 218/247 (88%)
 Strand = Plus / Plus

                                                                       
Query: 382 ttgcaagcaagataaataccgaggaaattattcggagatttgaggacaagttatcacagg 441
           |||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||| |||
Sbjct: 6   ttgcaagcaagataaataccaatgaaattattcgcagattcgaggagaagttatcaaagg 65

                                                                       
Query: 442 tgatggaggagcgtgaaatcaagctgatgaggaaggagatggttccaaaggcccaactta 501
           |||| |||||||| || |||||| |||||||||||||||||||||  ||||||||||| |
Sbjct: 66  tgatagaggagcgcgagatcaagatgatgaggaaggagatggttcacaaggcccaactca 125

                                                                       
Query: 502 tgccagcatttgacaagccattccacccacaaaggtcgaggaggcccctcaccgtcccca 561
           ||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||| || |
Sbjct: 126 tgccagcgtttgacaagccatttcacccacaaaggtcgacgaggcccctgaccgttccaa 185

                                                                       
Query: 562 aggagccgagcttcctgaggctcaagtgctgcatcggcggcgagttccaccgccacttct 621
           ||||||| |||||||||||||| || |||||||| || || ||||| || ||||| || |
Sbjct: 186 aggagcccagcttcctgaggctgaaatgctgcattggaggagagtttcatcgccattttt 245

                  
Query: 622 gctacaa 628
           |||||||
Sbjct: 246 gctacaa 252

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score =  123 bits (62), Expect = 1e-24
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                           
Query: 439     aggtgatggaggagcgtgaaatcaagctgatgaggaaggagatggttccaaaggcccaac 498
               ||||||| |||||||| || |||||| |||||||||||||||||||||  ||||||||||
Sbjct: 7912363 aggtgatagaggagcgcgagatcaagatgatgaggaaggagatggttcacaaggcccaac 7912422

                                                     
Query: 499     ttatgccagcatttgacaagccattccacccacaaagg 536
               | |||||||| |||||||||||||| ||||||||||||
Sbjct: 7912423 tcatgccagcgtttgacaagccatttcacccacaaagg 7912460



 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                           
Query: 228     ggtcaagactcggcaactcatgatgaaagcaaacgccgttctccaacttcacaaacctca 287
               ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||| || 
Sbjct: 7911777 ggtcaagactcgataactctggatgaaagcaaacgccgttctccaacttcacaaacatcg 7911836

                     
Query: 288     cccaag 293
               ||||||
Sbjct: 7911837 cccaag 7911842



 Score = 81.8 bits (41), Expect = 5e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                           
Query: 301     caaagcacgagcaaccactgagctactgcaggcttcacaccgaggagcgggccataaggc 360
               |||| |||||||||||||||||||||| |||||||||||| |||||| | || |||| ||
Sbjct: 7911967 caaaacacgagcaaccactgagctacttcaggcttcacactgaggagagagcaataaagc 7912026

                        
Query: 361     gagctggtt 369
               |||||||||
Sbjct: 7912027 gagctggtt 7912035



 Score = 77.8 bits (39), Expect = 7e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                           
Query: 534     aggtcgaggaggcccctcaccgtccccaaggagccgagcttcctgaggctcaagtgctgc 593
               ||||||| ||||||||| ||||| || |||||||| |||||||||||||| || ||||||
Sbjct: 7913214 aggtcgacgaggcccctgaccgttccaaaggagcccagcttcctgaggctgaaatgctgc 7913273

                                                  
Query: 594     atcggcggcgagttccaccgccacttctgctacaa 628
               || || || ||||| || ||||| || ||||||||
Sbjct: 7913274 attggaggagagtttcatcgccatttttgctacaa 7913308



 Score = 73.8 bits (37), Expect = 1e-09
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                           
Query: 382     ttgcaagcaagataaataccgaggaaattattcggagatttgaggacaagttatcacagg 441
               |||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||| |||
Sbjct: 7912165 ttgcaagcaagataaataccaatgaaattattcgcagattcgaggagaagttatcaaagg 7912224

                
Query: 442     t 442
               |
Sbjct: 7912225 t 7912225



 Score = 50.1 bits (25), Expect = 0.017
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 78      atggagaaggcaaggaaggccacctcccctaag 110
               ||||| ||| |||||||||||||||||||||||
Sbjct: 7909949 atggaaaagacaaggaaggccacctcccctaag 7909981

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>dbj|AP006235.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0017N10
          Length = 168535

 Score =  123 bits (62), Expect = 1e-24
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                         
Query: 439   aggtgatggaggagcgtgaaatcaagctgatgaggaaggagatggttccaaaggcccaac 498
             ||||||| |||||||| || |||||| |||||||||||||||||||||  ||||||||||
Sbjct: 25006 aggtgatagaggagcgcgagatcaagatgatgaggaaggagatggttcacaaggcccaac 25065

                                                   
Query: 499   ttatgccagcatttgacaagccattccacccacaaagg 536
             | |||||||| |||||||||||||| ||||||||||||
Sbjct: 25066 tcatgccagcgtttgacaagccatttcacccacaaagg 25103



 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                         
Query: 228   ggtcaagactcggcaactcatgatgaaagcaaacgccgttctccaacttcacaaacctca 287
             ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||| || 
Sbjct: 24420 ggtcaagactcgataactctggatgaaagcaaacgccgttctccaacttcacaaacatcg 24479

                   
Query: 288   cccaag 293
             ||||||
Sbjct: 24480 cccaag 24485



 Score = 81.8 bits (41), Expect = 5e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                         
Query: 301   caaagcacgagcaaccactgagctactgcaggcttcacaccgaggagcgggccataaggc 360
             |||| |||||||||||||||||||||| |||||||||||| |||||| | || |||| ||
Sbjct: 24610 caaaacacgagcaaccactgagctacttcaggcttcacactgaggagagagcaataaagc 24669

                      
Query: 361   gagctggtt 369
             |||||||||
Sbjct: 24670 gagctggtt 24678



 Score = 77.8 bits (39), Expect = 7e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 534   aggtcgaggaggcccctcaccgtccccaaggagccgagcttcctgaggctcaagtgctgc 593
             ||||||| ||||||||| ||||| || |||||||| |||||||||||||| || ||||||
Sbjct: 25857 aggtcgacgaggcccctgaccgttccaaaggagcccagcttcctgaggctgaaatgctgc 25916

                                                
Query: 594   atcggcggcgagttccaccgccacttctgctacaa 628
             || || || ||||| || ||||| || ||||||||
Sbjct: 25917 attggaggagagtttcatcgccatttttgctacaa 25951



 Score = 73.8 bits (37), Expect = 1e-09
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 382   ttgcaagcaagataaataccgaggaaattattcggagatttgaggacaagttatcacagg 441
             |||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||| |||
Sbjct: 24808 ttgcaagcaagataaataccaatgaaattattcgcagattcgaggagaagttatcaaagg 24867

              
Query: 442   t 442
             |
Sbjct: 24868 t 24868



 Score = 50.1 bits (25), Expect = 0.017
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 78    atggagaaggcaaggaaggccacctcccctaag 110
             ||||| ||| |||||||||||||||||||||||
Sbjct: 22592 atggaaaagacaaggaaggccacctcccctaag 22624

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>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0064I23
          Length = 161865

 Score =  123 bits (62), Expect = 1e-24
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                          
Query: 439    aggtgatggaggagcgtgaaatcaagctgatgaggaaggagatggttccaaaggcccaac 498
              ||||||| |||||||| || |||||| |||||||||||||||||||||  ||||||||||
Sbjct: 159566 aggtgatagaggagcgcgagatcaagatgatgaggaaggagatggttcacaaggcccaac 159625

                                                    
Query: 499    ttatgccagcatttgacaagccattccacccacaaagg 536
              | |||||||| |||||||||||||| ||||||||||||
Sbjct: 159626 tcatgccagcgtttgacaagccatttcacccacaaagg 159663



 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                          
Query: 228    ggtcaagactcggcaactcatgatgaaagcaaacgccgttctccaacttcacaaacctca 287
              ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||| || 
Sbjct: 158980 ggtcaagactcgataactctggatgaaagcaaacgccgttctccaacttcacaaacatcg 159039

                    
Query: 288    cccaag 293
              ||||||
Sbjct: 159040 cccaag 159045



 Score = 81.8 bits (41), Expect = 5e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                          
Query: 301    caaagcacgagcaaccactgagctactgcaggcttcacaccgaggagcgggccataaggc 360
              |||| |||||||||||||||||||||| |||||||||||| |||||| | || |||| ||
Sbjct: 159170 caaaacacgagcaaccactgagctacttcaggcttcacactgaggagagagcaataaagc 159229

                       
Query: 361    gagctggtt 369
              |||||||||
Sbjct: 159230 gagctggtt 159238



 Score = 77.8 bits (39), Expect = 7e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                          
Query: 534    aggtcgaggaggcccctcaccgtccccaaggagccgagcttcctgaggctcaagtgctgc 593
              ||||||| ||||||||| ||||| || |||||||| |||||||||||||| || ||||||
Sbjct: 160417 aggtcgacgaggcccctgaccgttccaaaggagcccagcttcctgaggctgaaatgctgc 160476

                                                 
Query: 594    atcggcggcgagttccaccgccacttctgctacaa 628
              || || || ||||| || ||||| || ||||||||
Sbjct: 160477 attggaggagagtttcatcgccatttttgctacaa 160511



 Score = 73.8 bits (37), Expect = 1e-09
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 382    ttgcaagcaagataaataccgaggaaattattcggagatttgaggacaagttatcacagg 441
              |||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||||| |||
Sbjct: 159368 ttgcaagcaagataaataccaatgaaattattcgcagattcgaggagaagttatcaaagg 159427

               
Query: 442    t 442
              |
Sbjct: 159428 t 159428



 Score = 50.1 bits (25), Expect = 0.017
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 78     atggagaaggcaaggaaggccacctcccctaag 110
              ||||| ||| |||||||||||||||||||||||
Sbjct: 157152 atggaaaagacaaggaaggccacctcccctaag 157184

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>gb|DQ370129.1| Pinus monticola open stomata 1 (OST1) gene, partial cds
          Length = 646

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 72 agagagatggagaaggcaaggaaggcc 98
          ||||| |||||||||||||||||||||
Sbjct: 58 agagatatggagaaggcaaggaaggcc 32

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>gb|DQ370128.1| Pinus thunbergii open stomata 1 (OST1) gene, partial cds
          Length = 648

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 72 agagagatggagaaggcaaggaaggcc 98
          ||||| |||||||||||||||||||||
Sbjct: 58 agagatatggagaaggcaaggaaggcc 32

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>gb|DQ370127.1| Pinus taeda open stomata 1 (OST1) gene, partial cds
          Length = 645

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 72 agagagatggagaaggcaaggaaggcc 98
          ||||| |||||||||||||||||||||
Sbjct: 58 agagatatggagaaggcaaggaaggcc 32

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>emb|AJ271796.1|ZMA271796 Zea mays mRNA for plasma membrane intrinsic protein (pip4 gene)
          Length = 1364

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 629 cgccggcggcggcgccaaggccgtcaa 655
           |||||||||||||||||| ||||||||
Sbjct: 567 cgccggcggcggcgccaacgccgtcaa 593

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>gb|AF326489.1|AF326489 Zea mays plasma membrane integral protein ZmPIP1-5 mRNA, complete
           cds
          Length = 1338

 Score = 46.1 bits (23), Expect = 0.26
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 629 cgccggcggcggcgccaaggccgtcaa 655
           |||||||||||||||||| ||||||||
Sbjct: 558 cgccggcggcggcgccaacgccgtcaa 584

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>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0034E03 map near 50283S, complete sequence
          Length = 134074

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 973   atgcatgcatgcatgcgtgctg 994
             ||||||||||||||||||||||
Sbjct: 64246 atgcatgcatgcatgcgtgctg 64225

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>gb|AC114045.5| Rattus norvegicus 20 BAC CH230-187J1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211095

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 278   acaaacctcacccaagagatcg 299
             ||||||||||||||||||||||
Sbjct: 24426 acaaacctcacccaagagatcg 24447

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>gb|AC113475.12| Mus musculus chromosome 12, clone RP23-304B1, complete sequence
          Length = 177032

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 193    gaccaaaaaatgagcagcaaaa 214
              ||||||||||||||||||||||
Sbjct: 155401 gaccaaaaaatgagcagcaaaa 155422

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>gb|AC113979.8| Mus musculus chromosome 12, clone RP23-478I20, complete sequence
          Length = 172842

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 193    gaccaaaaaatgagcagcaaaa 214
              ||||||||||||||||||||||
Sbjct: 147848 gaccaaaaaatgagcagcaaaa 147827

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>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
          Length = 135248

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 971   taatgcatgcatgcatgcgtgc 992
             ||||||||||||||||||||||
Sbjct: 85782 taatgcatgcatgcatgcgtgc 85803

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 973      atgcatgcatgcatgcgtgctg 994
                ||||||||||||||||||||||
Sbjct: 14762814 atgcatgcatgcatgcgtgctg 14762835



 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1022     ctggtgatgataatgataaaa 1042
                |||||||||||||||||||||
Sbjct: 16540178 ctggtgatgataatgataaaa 16540158

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>emb|BX571792.9| Zebrafish DNA sequence from clone CH211-177D9 in linkage group 12,
             complete sequence
          Length = 141671

 Score = 44.1 bits (22), Expect = 1.0
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 973   atgcatgcatgcatgcgtgctggctt 998
             |||||||||||||||| |||||||||
Sbjct: 42235 atgcatgcatgcatgcttgctggctt 42260

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>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome
          Length = 6988209

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 632     cggcggcggcgccaaggccgt 652
               |||||||||||||||||||||
Sbjct: 4896329 cggcggcggcgccaaggccgt 4896309

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>emb|CT573308.6| Zebrafish DNA sequence from clone CH73-68B9 in linkage group 6,
             complete sequence
          Length = 58660

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 972   aatgcatgcatgcatgcgtgc 992
             |||||||||||||||||||||
Sbjct: 54036 aatgcatgcatgcatgcgtgc 54016

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>emb|CR855111.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0209H04, complete
             sequence
          Length = 89787

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 967   gatgtaatgcatgcatgcatg 987
             |||||||||||||||||||||
Sbjct: 60358 gatgtaatgcatgcatgcatg 60378

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>ref|NM_001074449.1| Oryza sativa (japonica cultivar-group) Os11g0485900 (Os11g0485900)
            mRNA, partial cds
          Length = 2353

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1022 ctggtgatgataatgataaaa 1042
            |||||||||||||||||||||
Sbjct: 1533 ctggtgatgataatgataaaa 1553

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>emb|CR854899.16| Zebrafish DNA sequence from clone CH211-268B14 in linkage group 14,
            complete sequence
          Length = 142230

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 972  aatgcatgcatgcatgcgtgc 992
            |||||||||||||||||||||
Sbjct: 4129 aatgcatgcatgcatgcgtgc 4149

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>gb|AC164647.3| Mus musculus BAC clone RP23-463P13 from chromosome 16, complete
             sequence
          Length = 181953

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 632   cggcggcggcgccaaggccgt 652
             |||||||||||||||||||||
Sbjct: 25173 cggcggcggcgccaaggccgt 25153

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>gb|AC166346.5| Mus musculus BAC clone RP24-83P13 from chromosome 16, complete sequence
          Length = 199678

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1023  tggtgatgataatgataaaag 1043
             |||||||||||||||||||||
Sbjct: 70272 tggtgatgataatgataaaag 70252

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>gb|AC166832.2| Mus musculus BAC clone RP23-220N17 from chromosome 16, complete sequence
          Length = 172644

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1023   tggtgatgataatgataaaag 1043
              |||||||||||||||||||||
Sbjct: 101009 tggtgatgataatgataaaag 100989

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>gb|AC116768.9| Mus musculus chromosome 8, clone RP23-395P10, complete sequence
          Length = 191757

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   cacaaacctcacccaagagat 297
             |||||||||||||||||||||
Sbjct: 47797 cacaaacctcacccaagagat 47777

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>gb|AF115465.1| Leishmania donovani 28S ribosomal RNA subunit beta gene, partial
           sequence; 28S ribosomal RNA subunits delta, zeta, and
           epsilon genes, complete sequence
          Length = 2389

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 196 caaaaaatgagcagcaaaact 216
           |||||||||||||||||||||
Sbjct: 781 caaaaaatgagcagcaaaact 761

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>gb|AC148759.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0030K09, complete sequence
          Length = 143355

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1022 ctggtgatgataatgataaaa 1042
            |||||||||||||||||||||
Sbjct: 542  ctggtgatgataatgataaaa 522

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>gb|AY631857.1| Pennisetum glaucum teosinte-branched one (tb1) gene, complete cds
          Length = 1971

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1003 tatgtgtgtgtctctcgatct 1023
            |||||||||||||||||||||
Sbjct: 1938 tatgtgtgtgtctctcgatct 1958

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>ref|XM_870940.1| PREDICTED: Bos taurus similar to immunoglobulin mu binding protein 2
            (LOC618606), mRNA
          Length = 3152

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 455  tgaaatcaagctgatgaggaaggag 479
            ||||||||||||| |||||||||||
Sbjct: 977  tgaaatcaagctgctgaggaaggag 1001

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>gb|AC150540.2| Bos taurus  BAC CH240-385H19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 172471

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 973   atgcatgcatgcatgcgtgct 993
             |||||||||||||||||||||
Sbjct: 18989 atgcatgcatgcatgcgtgct 18969

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>gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0041J18, complete sequence
          Length = 129523

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1022  ctggtgatgataatgataaaa 1042
             |||||||||||||||||||||
Sbjct: 67403 ctggtgatgataatgataaaa 67383

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>gb|AF139593.2| Xanthobacter autotrophicus outer membrane receptor-like protein gene,
            partial cds; and methylene tetrahydromethanopterin
            dehydrogenase (mtdB), methenyl tetrahydromethanopterin
            cyclohydrolase (mch), putative tetrahydromethanopterin
            biosynthesis protein, conserved hypothetical protein,
            putative tetrahydromethanopterin biosynthesis protein,
            putative cytochrome C protein,
            formyltransferase/cyclohydrolase complex subunit C
            (fhcC), formyltransferase/cyclohydrolase complex subunit
            D (fhcD), formyltransferase/cyclohydrolase complex
            subunit A (fhcA), formyltransferase/cyclohydrolase
            complex subunit B (fhcB), conserved hypothetical protein,
            and putative protein genes, complete cds
          Length = 13310

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 631  ccggcggcggcgccaaggccg 651
            |||||||||||||||||||||
Sbjct: 8409 ccggcggcggcgccaaggccg 8429

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>gb|AC125466.4| Mus musculus BAC clone RP23-477O24 from chromosome 9, complete sequence
          Length = 150128

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 973    atgcatgcatgcatgcgtgct 993
              |||||||||||||||||||||
Sbjct: 134522 atgcatgcatgcatgcgtgct 134542

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>gb|AC153499.7| Mus musculus 10 BAC RP23-478J15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207222

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 100   cctcccctaagagctcatcaactag 124
             |||||||||| ||||||||||||||
Sbjct: 48372 cctcccctaaaagctcatcaactag 48348

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>dbj|AK085259.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630001L09 product:unclassifiable, full
           insert sequence
          Length = 3129

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 277 cacaaacctcacccaagagat 297
           |||||||||||||||||||||
Sbjct: 670 cacaaacctcacccaagagat 650

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 973      atgcatgcatgcatgcgtgct 993
                |||||||||||||||||||||
Sbjct: 21594393 atgcatgcatgcatgcgtgct 21594373

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 967      gatgtaatgcatgcatgcatg 987
                |||||||||||||||||||||
Sbjct: 19721629 gatgtaatgcatgcatgcatg 19721649

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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete
             sequence
          Length = 144191

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 973   atgcatgcatgcatgcgtgct 993
             |||||||||||||||||||||
Sbjct: 15664 atgcatgcatgcatgcgtgct 15684

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>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete
             sequence
          Length = 132927

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 973   atgcatgcatgcatgcgtgct 993
             |||||||||||||||||||||
Sbjct: 26297 atgcatgcatgcatgcgtgct 26277

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>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23,
             complete sequence
          Length = 133759

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 967   gatgtaatgcatgcatgcatg 987
             |||||||||||||||||||||
Sbjct: 10091 gatgtaatgcatgcatgcatg 10111

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>emb|CR391929.9| Zebrafish DNA sequence from clone DKEYP-86B5, complete sequence
          Length = 223724

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 972   aatgcatgcatgcatgcgtgc 992
             |||||||||||||||||||||
Sbjct: 62946 aatgcatgcatgcatgcgtgc 62926

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>emb|BX248396.10| Zebrafish DNA sequence from clone CH211-219M13, complete sequence
          Length = 196673

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 972    aatgcatgcatgcatgcgtgc 992
              |||||||||||||||||||||
Sbjct: 100821 aatgcatgcatgcatgcgtgc 100841

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>dbj|AK106341.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G09, full
            insert sequence
          Length = 2353

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1022 ctggtgatgataatgataaaa 1042
            |||||||||||||||||||||
Sbjct: 1533 ctggtgatgataatgataaaa 1553

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>emb|AL591411.14| Mouse DNA sequence from clone RP23-428M13 on chromosome 2, complete
              sequence
          Length = 155889

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 973    atgcatgcatgcatgcgtgct 993
              |||||||||||||||||||||
Sbjct: 150984 atgcatgcatgcatgcgtgct 150964

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>gb|AC170999.2| Mus musculus BAC clone RP23-443L17 from chromosome 14, complete sequence
          Length = 196017

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 997    tttacgtatgtgtgtgtctct 1017
              |||||||||||||||||||||
Sbjct: 182502 tttacgtatgtgtgtgtctct 182522

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>gb|AC163692.4| Mus musculus BAC clone RP24-68H1 from chromosome 14, complete sequence
          Length = 224333

 Score = 42.1 bits (21), Expect = 4.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 997    tttacgtatgtgtgtgtctct 1017
              |||||||||||||||||||||
Sbjct: 200402 tttacgtatgtgtgtgtctct 200382


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 169,228,046
Number of extensions: 9522544
Number of successful extensions: 215351
Number of sequences better than 10.0: 49
Number of HSP's gapped: 215347
Number of HSP's successfully gapped: 70
Length of query: 1074
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1051
Effective length of database: 18,503,978,556
Effective search space: 19447681462356
Effective search space used: 19447681462356
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result