ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf132l12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 69.9 bits (35), Expect = 3e-08 Identities = 118/143 (82%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 200 gatgacgttttactgtctatcttgaggaatgtcgacataagcaccgctgtaaggacaagt 259 |||||| ||||||||||||||||| ||| || ||||||| | | ||||||||||||||| Sbjct: 26884035 gatgacattttactgtctatcttggggagagtggacataatctcggctgtaaggacaagt 26884094 Query: 260 -tcgctgtcaactcggtggaggcagctgccctggctgctgcctgagctgagcattgatgt 318 ||| ||||||| || |||| || ||||| ||| |||| |||||| | | ||||||||| Sbjct: 26884095 gtcg-tgtcaacacgctggaaacatctgccttggttgctccctgagttcaccattgatgt 26884153 Query: 319 caggcatttcctacctgttccac 341 || | |||| |||||||| |||| Sbjct: 26884154 caaggattttctacctgtcccac 26884176 Score = 54.0 bits (27), Expect = 0.002 Identities = 33/35 (94%) Strand = Plus / Plus Query: 1025 atacatactttgacattggatttccaaggagaaaa 1059 ||||||||| | ||||||||||||||||||||||| Sbjct: 26884860 atacatactctaacattggatttccaaggagaaaa 26884894 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1028 catactttgacattggatttccaaggagaaaa 1059 |||||||||||| | ||||||||||||||||| Sbjct: 26800023 catactttgacaatagatttccaaggagaaaa 26800054 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1028 catactttgacattggatttccaaggagaaaa 1059 |||||||||||| | ||||||||||||||||| Sbjct: 26827306 catactttgacaatagatttccaaggagaaaa 26827337 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Plus Query: 786 agatagatgcaccaaactcaaaactcagtgtt 817 ||||| ||||||| |||||||||||||||||| Sbjct: 26887037 agataaatgcaccgaactcaaaactcagtgtt 26887068
>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0503D09 Length = 144443 Score = 69.9 bits (35), Expect = 3e-08 Identities = 118/143 (82%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 200 gatgacgttttactgtctatcttgaggaatgtcgacataagcaccgctgtaaggacaagt 259 |||||| ||||||||||||||||| ||| || ||||||| | | ||||||||||||||| Sbjct: 32626 gatgacattttactgtctatcttggggagagtggacataatctcggctgtaaggacaagt 32685 Query: 260 -tcgctgtcaactcggtggaggcagctgccctggctgctgcctgagctgagcattgatgt 318 ||| ||||||| || |||| || ||||| ||| |||| |||||| | | ||||||||| Sbjct: 32686 gtcg-tgtcaacacgctggaaacatctgccttggttgctccctgagttcaccattgatgt 32744 Query: 319 caggcatttcctacctgttccac 341 || | |||| |||||||| |||| Sbjct: 32745 caaggattttctacctgtcccac 32767 Score = 54.0 bits (27), Expect = 0.002 Identities = 33/35 (94%) Strand = Plus / Plus Query: 1025 atacatactttgacattggatttccaaggagaaaa 1059 ||||||||| | ||||||||||||||||||||||| Sbjct: 33451 atacatactctaacattggatttccaaggagaaaa 33485 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Plus Query: 786 agatagatgcaccaaactcaaaactcagtgtt 817 ||||| ||||||| |||||||||||||||||| Sbjct: 35628 agataaatgcaccgaactcaaaactcagtgtt 35659
>ref|NM_001066985.1| Oryza sativa (japonica cultivar-group) Os07g0644900 (Os07g0644900) mRNA, complete cds Length = 867 Score = 61.9 bits (31), Expect = 7e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 1028 catactttgacattggatttccaaggagaaaatctttggatccaacctgaa 1078 |||||||||||| | ||||||||||||||||| |||||| | ||||||||| Sbjct: 448 catactttgacaatagatttccaaggagaaaagctttgggtacaacctgaa 498
>dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1458_B07 Length = 99415 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1028 catactttgacattggatttccaaggagaaaa 1059 |||||||||||| | ||||||||||||||||| Sbjct: 46197 catactttgacaatagatttccaaggagaaaa 46228 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1028 catactttgacattggatttccaaggagaaaa 1059 |||||||||||| | ||||||||||||||||| Sbjct: 73480 catactttgacaatagatttccaaggagaaaa 73511
>gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, complete sequence Length = 182075 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1754 ccttttctttcttttgttttgaga 1777 |||||||||||||||||||||||| Sbjct: 82397 ccttttctttcttttgttttgaga 82420
>gb|AC093599.6| Homo sapiens BAC clone RP11-285C1 from 4, complete sequence Length = 187937 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1755 cttttctttcttttgttttgaga 1777 ||||||||||||||||||||||| Sbjct: 132025 cttttctttcttttgttttgaga 132003
>gb|AC154356.2| Mus musculus BAC clone RP23-189C20 from 13, complete sequence Length = 201031 Score = 46.1 bits (23), Expect = 0.44 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1708 ttctgtgttagtcaaacagttgcatga 1734 |||||||||| |||||||||||||||| Sbjct: 113731 ttctgtgttaatcaaacagttgcatga 113705
>gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, complete sequence Length = 195537 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1755 cttttctttcttttgttttgaga 1777 ||||||||||||||||||||||| Sbjct: 96014 cttttctttcttttgttttgaga 96036
>gb|AC166173.3| Mus musculus BAC clone RP23-101K10 from chromosome 3, complete sequence Length = 196177 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Plus Query: 801 actcaaaactcagtgttctggaa 823 ||||||||||||||||||||||| Sbjct: 100641 actcaaaactcagtgttctggaa 100663
>gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, complete sequence Length = 236182 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1176 aggcagccccatccatggaaatatta 1201 |||| ||||||||||||||||||||| Sbjct: 85097 aggctgccccatccatggaaatatta 85072
>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence Length = 651701 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1752 taccttttctttcttttgtttt 1773 |||||||||||||||||||||| Sbjct: 400686 taccttttctttcttttgtttt 400707
>gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215953 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1756 ttttctttcttttgttttgaga 1777 |||||||||||||||||||||| Sbjct: 15505 ttttctttcttttgttttgaga 15526
>ref|NM_134417.1| Rattus norvegicus inositol polyphosphate multikinase (Ipmk), mRNA gb|AY014898.1| Rattus norvegicus inositol polyphosphate multikinase (Ipmk) mRNA, complete cds Length = 5432 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1752 taccttttctttcttttgtttt 1773 |||||||||||||||||||||| Sbjct: 1965 taccttttctttcttttgtttt 1986
>gb|AC079249.5| Homo sapiens BAC clone RP11-60F10 from 2, complete sequence Length = 33532 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1756 ttttctttcttttgttttgaga 1777 |||||||||||||||||||||| Sbjct: 12626 ttttctttcttttgttttgaga 12647
>gb|BC111016.1| Homo sapiens nucleoporin 35kDa, mRNA (cDNA clone IMAGE:5176043), with apparent retained intron Length = 2890 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1756 ttttctttcttttgttttgaga 1777 |||||||||||||||||||||| Sbjct: 1536 ttttctttcttttgttttgaga 1557
>ref|XM_001157004.1| PREDICTED: Pan troglodytes hypothetical protein LOC744747, transcript variant 2 (LOC744747), mRNA Length = 3583 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1552 ggtatttgctgaaagaaaaaa 1572
>ref|XM_001156956.1| PREDICTED: Pan troglodytes hypothetical protein LOC744747, transcript variant 1 (LOC744747), mRNA Length = 5207 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1374 ggtatttgctgaaagaaaaaa 1394
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 17494233 tgaccaaagcagccaagtgct 17494253
>emb|CT954293.6| N.leucogenys DNA sequence from clone CH271-228N13, complete sequence Length = 151981 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1757 tttctttcttttgttttgaga 1777 ||||||||||||||||||||| Sbjct: 47166 tttctttcttttgttttgaga 47186
>gb|AC189540.1| Brassica rapa subsp. pekinensis clone KBrH003N18, complete sequence Length = 132619 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1754 ccttttctttcttttgttttg 1774 ||||||||||||||||||||| Sbjct: 83984 ccttttctttcttttgttttg 84004
>ref|XM_001102591.1| PREDICTED: Macaca mulatta hypothetical protein LOC704426, transcript variant 3 (LOC704427), mRNA Length = 4032 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1547 ggtatttgctgaaagaaaaaa 1567
>ref|XM_001102497.1| PREDICTED: Macaca mulatta hypothetical protein LOC704426, transcript variant 2 (LOC704427), mRNA Length = 5199 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1358 ggtatttgctgaaagaaaaaa 1378
>ref|XM_001107903.1| PREDICTED: Macaca mulatta hypothetical protein LOC711667 (LOC711667), mRNA Length = 1751 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ccctggctgctgcctgagctg 307 ||||||||||||||||||||| Sbjct: 347 ccctggctgctgcctgagctg 367
>ref|XM_001107595.1| PREDICTED: Macaca mulatta platelet-derived growth factor receptor beta, transcript variant 2 (PDGFRB), mRNA Length = 5663 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 ccctggctgctgcctgagctg 307 ||||||||||||||||||||| Sbjct: 4259 ccctggctgctgcctgagctg 4279
>gb|AC111074.4| Mus musculus chromosome 1, clone RP24-390A1, complete sequence Length = 124758 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1757 tttctttcttttgttttgagaatta 1781 |||||||||||| |||||||||||| Sbjct: 102219 tttctttctttttttttgagaatta 102195
>gb|AC160017.2| Mus musculus BAC clone RP23-172C19 from chromosome 9, complete sequence Length = 189417 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1197 tattacatattgaggtatggg 1217 ||||||||||||||||||||| Sbjct: 115671 tattacatattgaggtatggg 115651
>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and partial cds Length = 270752 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 gcagctgccctggctgctgcc 300 ||||||||||||||||||||| Sbjct: 130315 gcagctgccctggctgctgcc 130335
>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence Length = 202878 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1754 ccttttctttcttttgttttg 1774 ||||||||||||||||||||| Sbjct: 156942 ccttttctttcttttgttttg 156962
>gb|AC102454.7| Mus musculus chromosome 5, clone RP24-296L13, complete sequence Length = 149588 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1754 ccttttctttcttttgttttg 1774 ||||||||||||||||||||| Sbjct: 107111 ccttttctttcttttgttttg 107091
>gb|AC083858.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-423A22, complete sequence Length = 74718 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1503 agagtgaggatgagcaagcaa 1523 ||||||||||||||||||||| Sbjct: 67686 agagtgaggatgagcaagcaa 67666
>gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) gene, complete cds; alternatively spliced isoforms Length = 219836 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1755 cttttctttcttttgttttga 1775 ||||||||||||||||||||| Sbjct: 77746 cttttctttcttttgttttga 77726
>gb|U67949.2| Caenorhabditis elegans cosmid F55A4, complete sequence Length = 42099 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 tttggacctttgccttcttga 558 ||||||||||||||||||||| Sbjct: 25384 tttggacctttgccttcttga 25404
>ref|NM_080488.2| Drosophila melanogaster DNA polymerase alpha 180kD CG6349-RA (DNApol-alpha180), mRNA Length = 4633 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 3064 tgaccaaagcagccaagtgct 3044
>gb|AC101872.7| Mus musculus chromosome 17, clone RP23-358C2, complete sequence Length = 202465 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1667 ccttctctttcttttgttttg 1687 ||||||||||||||||||||| Sbjct: 172340 ccttctctttcttttgttttg 172320
>ref|NM_212558.1| Homo sapiens similar to RIKEN A930001M12 (LOC401498), mRNA dbj|AK125320.1| Homo sapiens cDNA FLJ43330 fis, clone NT2RI3005403 Length = 3581 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1551 ggtatttgctgaaagaaaaaa 1571
>gb|AC099677.2| Homo sapiens chromosome 1 clone RP4-631H13, complete sequence Length = 116236 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 860 tgccttccagaactggaggag 880 ||||||||||||||||||||| Sbjct: 75318 tgccttccagaactggaggag 75338
>ref|NM_075795.2| Caenorhabditis elegans F55A4.5 (F55A4.5) mRNA, complete cds Length = 2640 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 tttggacctttgccttcttga 558 ||||||||||||||||||||| Sbjct: 1446 tttggacctttgccttcttga 1426
>dbj|AK042890.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730035K12 product:unclassifiable, full insert sequence Length = 1500 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1667 ccttctctttcttttgttttg 1687 ||||||||||||||||||||| Sbjct: 36 ccttctctttcttttgttttg 16
>gb|AC034222.5| Homo sapiens chromosome 5 clone CTD-2062O1, complete sequence Length = 140927 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1753 accttttctttcttttgtttt 1773 ||||||||||||||||||||| Sbjct: 92441 accttttctttcttttgtttt 92421
>gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete sequence Length = 109375 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 526 tttgctgaaagatttggacctttgc 550 |||||||||| |||||||||||||| Sbjct: 49308 tttgctgaaacatttggacctttgc 49332
>gb|AC078957.16| Homo sapiens Xp BAC RP11-339E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198088 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 974 ttttatagtacagtatttaaa 994 ||||||||||||||||||||| Sbjct: 167410 ttttatagtacagtatttaaa 167430
>ref|XM_688513.1| PREDICTED: Danio rerio similar to Calpain-2 catalytic subunit (Calpain-2 large subunit) (Calcium-activated neutral proteinase 2) (CANP 2) (Calpain M-type) (M-calpain) (Millimolar-calpain) (LOC565223), partial mRNA Length = 1456 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 gccttcttgatgatctgaaac 569 ||||||||||||||||||||| Sbjct: 132 gccttcttgatgatctgaaac 112
>emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-065B04, complete sequence Length = 35005 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 974 ttttatagtacagtatttaaa 994 ||||||||||||||||||||| Sbjct: 33896 ttttatagtacagtatttaaa 33876
>gb|AY070529.1| Drosophila melanogaster GM13460 full length cDNA Length = 2412 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 834 tgaccaaagcagccaagtgct 814
>emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chromosome 9p13.1-21.1 Contains a pseudogene similar to part of membrane guanylyl cyclase, a ribosomal protein S11 (RPS11) pseudogene, a novel gene and a CpG island, complete sequence Length = 176932 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 78756 ggtatttgctgaaagaaaaaa 78776
>gb|S48157.1| DNA polymerase-primase 180 kda subunit [Drosophila melanogaster, 0-4 h embryo, mRNA, 4649 nt] Length = 4649 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 3070 tgaccaaagcagccaagtgct 3050
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 ccggcgccgcaccgccgtgct 64 ||||||||||||||||||||| Sbjct: 928355 ccggcgccgcaccgccgtgct 928335
>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162063 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 18179 ggtatttgctgaaagaaaaaa 18199
>gb|AC008090.3|AC008090 Drosophila melanogaster, chromosome 3R, region 93E-93F, BAC clone BACR16N15, complete sequence Length = 172390 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 79455 tgaccaaagcagccaagtgct 79475
>emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chromosome 11 Contains the 3' end of a novel gene, two novel genes, the 5' end of the Brip1 gene for BRCA1 interacting protein C-terminal helicase 1 and a mitochondrial F0 complex H+ transporting ATP synthase subunit g (Atp5l) pseudogene, complete sequence Length = 200624 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1752 taccttttctttcttttgttt 1772 ||||||||||||||||||||| Sbjct: 66563 taccttttctttcttttgttt 66543
>emb|BX936318.10| Zebrafish DNA sequence from clone CH211-229O17 in linkage group 13, complete sequence Length = 158912 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 gccttcttgatgatctgaaac 569 ||||||||||||||||||||| Sbjct: 148938 gccttcttgatgatctgaaac 148958
>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13, complete sequence Length = 136285 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 gccttcttgatgatctgaaac 569 ||||||||||||||||||||| Sbjct: 25100 gccttcttgatgatctgaaac 25080
>emb|AL845508.11| Mouse DNA sequence from clone RP23-338N12 on chromosome 4 Contains a ribosomal protein L27A (Rpl27a) pseudogene, a large ribosomal protein P1 (Rplp1) pseudogene, a developmentally regulated GTP binding protein 1 (Drg1) pseudogene and part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 141019 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 672 tgcatggtgtttgttttatcgagtt 696 ||||||||||||||||||| ||||| Sbjct: 31703 tgcatggtgtttgttttatggagtt 31727
>emb|BX548160.13| Zebrafish DNA sequence from clone DKEY-25G11 in linkage group 11, complete sequence Length = 237930 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 974 ttttatagtacagtatttaaattaa 998 |||||||||||||||| |||||||| Sbjct: 24690 ttttatagtacagtatataaattaa 24714
>gb|AC024023.4| Homo sapiens BAC clone RP11-83C7 from 4, complete sequence Length = 159875 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1754 ccttttctttcttttgttttg 1774 ||||||||||||||||||||| Sbjct: 97273 ccttttctttcttttgttttg 97253
>gb|AC046158.6| Homo sapiens chromosome 16 clone RP11-264L1, complete sequence Length = 150361 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 gcagctgccctggctgctgcc 300 ||||||||||||||||||||| Sbjct: 104395 gcagctgccctggctgctgcc 104415
>emb|BX647550.1|HSM807696 Homo sapiens mRNA; cDNA DKFZp686N0997 (from clone DKFZp686N0997) Length = 3559 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1510 ggtatttgctgaaagaaaaaa 1530
>gb|AC017083.7| Homo sapiens BAC clone RP11-474G23 from 2, complete sequence Length = 198278 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1757 tttctttcttttgttttgaga 1777 ||||||||||||||||||||| Sbjct: 61773 tttctttcttttgttttgaga 61793
>emb|CR749589.1| Homo sapiens mRNA; cDNA DKFZp686I2292 (from clone DKFZp686I2292) Length = 5098 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1261 ggtatttgctgaaagaaaaaa 1281 ||||||||||||||||||||| Sbjct: 1372 ggtatttgctgaaagaaaaaa 1392
>gb|AC007246.3| Homo sapiens BAC clone RP11-288L6 from 2, complete sequence Length = 149474 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1668 cttctctttcttttgttttgagaag 1692 |||||||||||||||| |||||||| Sbjct: 105513 cttctctttcttttgtcttgagaag 105489
>emb|BX511229.6| Zebrafish DNA sequence from clone CH211-194H2 in linkage group 11, complete sequence Length = 211986 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 974 ttttatagtacagtatttaaattaa 998 |||||||||||||||| |||||||| Sbjct: 4106 ttttatagtacagtatataaattaa 4130
>dbj|AP004960.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19B18, TM0139, complete sequence Length = 106089 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1756 ttttctttcttttgttttgag 1776 ||||||||||||||||||||| Sbjct: 84035 ttttctttcttttgttttgag 84055
>ref|NM_001013501.1| Danio rerio zgc:113590 (zgc:113590), mRNA gb|BC090435.1| Danio rerio zgc:113590, mRNA (cDNA clone MGC:113590 IMAGE:7138185), complete cds Length = 2439 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 gccttcttgatgatctgaaac 569 ||||||||||||||||||||| Sbjct: 781 gccttcttgatgatctgaaac 761
>emb|BX648522.1|HSM808670 Homo sapiens mRNA; cDNA DKFZp686F0985 (from clone DKFZp686F0985) Length = 2169 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 860 tgccttccagaactggaggag 880 ||||||||||||||||||||| Sbjct: 409 tgccttccagaactggaggag 389
>dbj|AP000818.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-44A17, complete sequence Length = 134973 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1755 cttttctttcttttgttttga 1775 ||||||||||||||||||||| Sbjct: 49508 cttttctttcttttgttttga 49528
>dbj|D90310.1|DROPOLA Drosophila melanogaster POLA gene for DNA polymerase alpha, complete cds Length = 6420 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 4181 tgaccaaagcagccaagtgct 4161
>emb|CT486002.9| Mouse DNA sequence from clone RP23-396G8 on chromosome 17, complete sequence Length = 220042 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1667 ccttctctttcttttgttttg 1687 ||||||||||||||||||||| Sbjct: 107636 ccttctctttcttttgttttg 107616
>gb|AC140293.4| Mus musculus BAC clone RP24-328A10 from 13, complete sequence Length = 188473 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1752 taccttttctttcttttgttt 1772 ||||||||||||||||||||| Sbjct: 109256 taccttttctttcttttgttt 109276
>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete sequence Length = 195936 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1755 cttttctttcttttgttttga 1775 ||||||||||||||||||||| Sbjct: 62392 cttttctttcttttgttttga 62412
>emb|CT010408.3| Pan troglodytes chromosome X BAC RP43-014H14, complete sequence Length = 172332 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 974 ttttatagtacagtatttaaa 994 ||||||||||||||||||||| Sbjct: 5775 ttttatagtacagtatttaaa 5755
>gb|M86524.1|HUMDYSTROP Human dystrophin gene Length = 38770 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 974 ttttatagtacagtatttaaa 994 ||||||||||||||||||||| Sbjct: 24871 ttttatagtacagtatttaaa 24891
>dbj|AB017765.2| Trypanosoma cruzi genes for GATase-CPSase, DHOase, OMPDCase-OPRTase, surface protein, ACTase and DHODase, complete cds Length = 25339 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1668 cttctctttcttttgttttga 1688 ||||||||||||||||||||| Sbjct: 12003 cttctctttcttttgttttga 12023
>dbj|AB011813.1| Drosophila melanogaster genes for DNA polymerase alpha 180K subunit, E2F, complete cds Length = 65114 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgaccaaagcagccaagtgct 410 ||||||||||||||||||||| Sbjct: 11235 tgaccaaagcagccaagtgct 11215 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 365,228,217 Number of extensions: 21624266 Number of successful extensions: 495007 Number of sequences better than 10.0: 73 Number of HSP's gapped: 495005 Number of HSP's successfully gapped: 80 Length of query: 1818 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1795 Effective length of database: 18,503,978,556 Effective search space: 33214641508020 Effective search space used: 33214641508020 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
