ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf127b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q28GF5:TMM18_XENTR Transmembrane protein 18 - Xenopus tropicalis... 80 1e-14
2Q4V7N7:TMM18_XENLA Transmembrane protein 18 - Xenopus laevis (Af... 77 1e-13
3Q96B42:TMM18_HUMAN Transmembrane protein 18 - Homo sapiens (Human) 77 2e-13
4Q641M3:TMM18_DANRE Transmembrane protein 18 - Danio rerio (Zebra... 76 3e-13
5Q3SZ36:TMM18_BOVIN Transmembrane protein 18 - Bos taurus (Bovine) 74 1e-12
6Q6DGF8:TMM18_RAT Transmembrane protein 18 - Rattus norvegicus (Rat) 73 2e-12
7Q3TUD9:TMM18_MOUSE Transmembrane protein 18 - Mus musculus (Mouse) 73 2e-12
8Q5F410:TMM18_CHICK Transmembrane protein 18 - Gallus gallus (Chi... 68 6e-11
9Q06FL5:YCF4_PELHO Photosystem I assembly protein ycf4 - Pelargon... 34 1.2
10Q06RD0:YCF4_JASNU Photosystem I assembly protein ycf4 - Jasminum... 33 1.5
11Q24523:BUN2_DROME Protein bunched, class 2 isoform - Drosophila ... 33 2.6
12Q8MT36:MES4_DROME Probable histone-lysine N-methyltransferase Me... 32 3.4
13P20806:7LESS_DROVI Protein sevenless - Drosophila virilis (Fruit... 32 4.4
14Q9DB98:LENG1_MOUSE Leukocyte receptor cluster member 1 - Mus mus... 31 9.9

>Q28GF5:TMM18_XENTR Transmembrane protein 18 - Xenopus tropicalis (Western clawed frog)|
           (Silurana tropicalis)
          Length = 136
 Score = 80.5 bits (197), Expect = 1e-14
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
 Frame = +2

Query: 215 VDWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSF 394
           +DWKEPWLIG+  FH + L+VT +S ++   Q+         V  AE +N F   +W+S+
Sbjct: 16  IDWKEPWLIGLAVFHILCLIVTYVSFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRSY 75

Query: 395 SSQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKHR-AREARSKQ 571
           S Q YFD  G+FIS+ +S P                  +M   K  + K + +RE R K+
Sbjct: 76  SKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVMTELKTLQQKRKESREKRKKK 135

Query: 572 E 574
           E
Sbjct: 136 E 136



to top

>Q4V7N7:TMM18_XENLA Transmembrane protein 18 - Xenopus laevis (African clawed frog)|
          Length = 136

 Score = 77.0 bits (188), Expect = 1e-13
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
 Frame = +2

Query: 215 VDWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSF 394
           +DW EPWLIG+ +FH +  +VT IS ++   Q+         V  AE +N F   +W+++
Sbjct: 16  IDWTEPWLIGLAAFHILCFIVTYISFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRAY 75

Query: 395 SSQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKHR-AREARSKQ 571
           S Q YFD  G+FIS+ +S P                  +M   K  + K + +RE R K+
Sbjct: 76  SKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVMTELKTLQQKRKESREKRKKK 135

Query: 572 E 574
           E
Sbjct: 136 E 136



to top

>Q96B42:TMM18_HUMAN Transmembrane protein 18 - Homo sapiens (Human)|
          Length = 140

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 37/119 (31%), Positives = 62/119 (52%)
 Frame = +2

Query: 218 DWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSFS 397
           DW EPWL+G+ +FHA+ +L+T +S R+   Q+         V+ AE +N     NW+ FS
Sbjct: 22  DWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 81

Query: 398 SQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKHRAREARSKQE 574
              YFD +G+FIS+++S P                  +M   K A+ + + ++ R K++
Sbjct: 82  KYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKKRRRKED 140



to top

>Q641M3:TMM18_DANRE Transmembrane protein 18 - Danio rerio (Zebrafish) (Brachydanio|
           rerio)
          Length = 152

 Score = 75.9 bits (185), Expect = 3e-13
 Identities = 39/129 (30%), Positives = 60/129 (46%)
 Frame = +2

Query: 185 VDSFVGFFHAVDWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLN 364
           + S   F  +VDW EPWL+ +++FH      T++S +    Q+       + V+ AE LN
Sbjct: 22  ITSIWTFLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLN 81

Query: 365 TFLGQNWKSFSSQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKH 544
                NW+SFS   YFD +G+FIS+++S P                   M   K  +LK 
Sbjct: 82  ELAAMNWRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWVWRTFSTMTELKILQLKR 141

Query: 545 RAREARSKQ 571
           +A     K+
Sbjct: 142 KAARENHKK 150



to top

>Q3SZ36:TMM18_BOVIN Transmembrane protein 18 - Bos taurus (Bovine)|
          Length = 139

 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 39/119 (32%), Positives = 59/119 (49%)
 Frame = +2

Query: 218 DWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSFS 397
           DW EPWL+G+  FH + LL+T  S +    Q+       + V+ AE +N     NW+ FS
Sbjct: 22  DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

Query: 398 SQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKHRAREARSKQE 574
              YFD +G+FIS+++S P                 ++M   +    + RAR AR K+E
Sbjct: 82  KHQYFDSRGMFISLVFSAPLLLNALVIVVLWVRKTLVVMTDLRSLREQRRAR-ARPKEE 139



to top

>Q6DGF8:TMM18_RAT Transmembrane protein 18 - Rattus norvegicus (Rat)|
          Length = 140

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 36/119 (30%), Positives = 59/119 (49%)
 Frame = +2

Query: 218 DWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSFS 397
           DW EPWL+G+++FH + LL+T  S +    Q+         V+ AE +N     NW+ F+
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

Query: 398 SQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKHRAREARSKQE 574
              YFD +G+FIS+++S P                  +M   K  + + + R+ R K+E
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAMVIVIMWVRKTLTVMSDLKNLQERRKERKRRRKEE 140



to top

>Q3TUD9:TMM18_MOUSE Transmembrane protein 18 - Mus musculus (Mouse)|
          Length = 140

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 37/119 (31%), Positives = 58/119 (48%)
 Frame = +2

Query: 218 DWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSFS 397
           DW EPWL+G+++FH + LL+T  S +    Q+         V+ AE +N     NW+ FS
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFS 81

Query: 398 SQNYFDPQGLFISVMWSGPXXXXXXXXXXXXXXXXCMLMVRWKRAELKHRAREARSKQE 574
              YFD +G+FIS+++S P                  +M   K  + + + R  R K+E
Sbjct: 82  KYQYFDSRGMFISLVFSAPLLFNAMLIVIMWVRKTLTVMTDLKTLQEERKERRRRRKEE 140



to top

>Q5F410:TMM18_CHICK Transmembrane protein 18 - Gallus gallus (Chicken)|
          Length = 142

 Score = 68.2 bits (165), Expect = 6e-11
 Identities = 30/79 (37%), Positives = 45/79 (56%)
 Frame = +2

Query: 218 DWKEPWLIGMISFHAILLLVTIISRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSFS 397
           DW EPWL+G+  FH +  L+T  S ++   Q+         V+ AE +N     NW+ FS
Sbjct: 26  DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFS 85

Query: 398 SQNYFDPQGLFISVMWSGP 454
              YFD +G+FIS+++S P
Sbjct: 86  KYQYFDSRGMFISLVFSAP 104



to top

>Q06FL5:YCF4_PELHO Photosystem I assembly protein ycf4 - Pelargonium hortorum (Common|
           geranium)
          Length = 184

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 287 SRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSF--SSQNYFDPQGLFIS 436
           SR+  NF   L  F  S  FL    +++LG+NW S   S Q  F PQG+ +S
Sbjct: 16  SRKTSNFLWALILFLGSFAFLLVGTSSYLGRNWISLFPSQQILFFPQGVVMS 67



to top

>Q06RD0:YCF4_JASNU Photosystem I assembly protein ycf4 - Jasminum nudiflorum (Winter|
           jasmine)
          Length = 184

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 287 SRRNINFQLILSAFTFSGVFLAEKLNTFLGQNWKSF--SSQNYFDPQGLFIS 436
           SR+  NF   L  F  S  FL    +++LG+NW SF  S Q  F PQG+ +S
Sbjct: 16  SRKLSNFCWALILFLGSLGFLLVGTSSYLGRNWISFVPSQQFIFFPQGIVMS 67



to top

>Q24523:BUN2_DROME Protein bunched, class 2 isoform - Drosophila melanogaster (Fruit|
           fly)
          Length = 1206

 Score = 32.7 bits (73), Expect = 2.6
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 601 RSAGMAASSFLLATGLTSAVLELGPFPPYHQHAERHKGVHQNKYRNQEQGT 449
           RS G AA+S   ATG T+A       P +H H   H   H N  + Q+Q T
Sbjct: 281 RSVGGAATS--AATGTTAAAGSHHHQPHHHHHHHHHHHQHHNHQQQQQQQT 329



to top

>Q8MT36:MES4_DROME Probable histone-lysine N-methyltransferase Mes-4 - Drosophila|
            melanogaster (Fruit fly)
          Length = 1427

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 726  HGFTHALADVRQIKAYVCVGSSECYLDSCRSQVPLYMHIHCYDLPLK 866
            H    A A V  +  Y+CV   E     C    P+ +H HC ++P+K
Sbjct: 988  HNIAKADAHVNVLWCYICVKGGELV---CCETCPIAVHAHCRNIPIK 1031



to top

>P20806:7LESS_DROVI Protein sevenless - Drosophila virilis (Fruit fly)|
          Length = 2594

 Score = 32.0 bits (71), Expect = 4.4
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 634  LDQQLNLLPHNRSAGMAASSFLLATGLTSAVLELGPFPPYHQHAERHKGVHQNKYRNQEQ 455
            L+ QLNL   +RSA +   S   A GLT  + +L P+  Y   A+         Y  Q+ 
Sbjct: 1747 LNYQLNLSSSSRSAQLELRSLHSAAGLTLNISQLQPYQAYELRAQ------VGSYYQQQL 1800

Query: 454  GTRP 443
            G  P
Sbjct: 1801 GQEP 1804



to top

>Q9DB98:LENG1_MOUSE Leukocyte receptor cluster member 1 - Mus musculus (Mouse)|
          Length = 261

 Score = 30.8 bits (68), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 532 GPFPPYHQHAERHKGVHQNKYRNQEQGTRPHDRDEEALGIKVIL 401
           GP   + +  E  KGV +    ++E+  R  +R E+ALGI   L
Sbjct: 74  GPVDLFRELLEERKGVPRGNKEHEEEKRREKERQEKALGILTYL 117


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 170,151,469
Number of extensions: 3573666
Number of successful extensions: 8737
Number of sequences better than 10.0: 14
Number of HSP's gapped: 8720
Number of HSP's successfully gapped: 14
Length of query: 354
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 240
Effective length of database: 69,416,809
Effective search space: 16660034160
Effective search space used: 16660034160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top