ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf126p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os12g0572800:Os12g0572800 42 0.002
2AK063781:Os05g0568600 32 1.2
3AK109044: 32 2.1
4AK106882:Os08g0197200 31 2.7
5AK120863:Os09g0434900 30 6.1
6AK109104:Os09g0434900 30 6.1
7AK065281:Os06g0476100 30 8.0

>Os12g0572800:Os12g0572800 |
          Length = 1132
 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246  DKAEAPHENSDC*SICCSCEATMETVPCLRKLCV-WTMKCVFTAWVIYGTA 395
            D+  AP+  SD   IC S +A M+ VPCL K+CV   M+C   A +  GTA
Sbjct: 1020 DRFLAPYPKSDYCIICRSYDAVMQLVPCLHKICVACMMRCNVRACMTCGTA 1070



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>AK063781:Os05g0568600 |
          Length = 231

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -1

Query: 138 DAMTRDQGWRHGISGAGNGGGR 73
           DA  R  GWR+  SG GNGGGR
Sbjct: 182 DAGGRGGGWRYYASGGGNGGGR 203



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>AK109044: |
          Length = 424

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 573 RVQNMVRGQIDQSVSAAASISSRNPMTLSNFAATTQTRMSPAAAGAHTVT 722
           RVQ+       +  SAAA+ +S  P +    +ATT+T+ S A AG+   T
Sbjct: 217 RVQSTTPASRTEPTSAAAAAASSQPSSAVPTSATTETKPSAATAGSQDGT 266



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>AK106882:Os08g0197200 |
          Length = 484

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 159 MEAGAAADAMTRDQGWRHGISGAGNGGG 76
           M+ GAA  A  RD G   G SG G GGG
Sbjct: 1   MQQGAAGQAPRRDDGEAAGPSGGGGGGG 28



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>AK120863:Os09g0434900 |
          Length = 296

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -1

Query: 249 CRGSRAVVDAGSRASLPLESTALCEEEKRGMEAGAAADAMTRDQGW--RHGISGAGNGGG 76
           C    A+    + A+LPL + A     K      + A  +  ++ W  RHG  G G+GG 
Sbjct: 154 CGEMAALEGEAAAAALPLRAAA----SKASCPTCSRAFCLQCEEPWDDRHGGGGGGDGGA 209

Query: 75  RC 70
           RC
Sbjct: 210 RC 211



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>AK109104:Os09g0434900 |
          Length = 296

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -1

Query: 249 CRGSRAVVDAGSRASLPLESTALCEEEKRGMEAGAAADAMTRDQGW--RHGISGAGNGGG 76
           C    A+    + A+LPL + A     K      + A  +  ++ W  RHG  G G+GG 
Sbjct: 154 CGEMAALEGEAAAAALPLRAAA----SKASCPTCSRAFCLQCEEPWDDRHGGGGGGDGGA 209

Query: 75  RC 70
           RC
Sbjct: 210 RC 211



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>AK065281:Os06g0476100 |
          Length = 126

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 103 PMSPPLVSRHRIGGSSRFHSPFLFFTQGSGL*WERCSRSRINDCSGAP 246
           PM  PLV  H++   +R+H+  L   Q + L W  CS    +D   AP
Sbjct: 47  PMPRPLVPLHQLRPLTRYHAAGLLPEQDALLSWCLCSPRLQDDPGAAP 94


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 55,860,016
Number of extensions: 1312932
Number of successful extensions: 3617
Number of sequences better than 10.0: 7
Number of HSP's gapped: 3607
Number of HSP's successfully gapped: 7
Length of query: 650
Length of database: 15,399,855
Length adjustment: 107
Effective length of query: 543
Effective length of database: 11,115,468
Effective search space: 6035699124
Effective search space used: 6035699124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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