| Clone Name | FLbaf119n05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT834690.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN068G12, full insert sequence Length = 965 Score = 513 bits (259), Expect = e-142 Identities = 463/531 (87%) Strand = Plus / Plus Query: 298 ccggatgctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcc 357 |||||||||||||||||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 313 ccggatgctatgctgctaggctgctcgtccctgacgtcgtgggtgcgtcgcctcgtcgcc 372 Query: 358 tgcgtgggaaattgttttggatgtgcgaagtctacacctataacagctgttgatgagcct 417 ||||| ||||||||||||||||| ||||| |||| || |||| ||| |||||||||||| Sbjct: 373 tgcgttggaaattgttttggatgcgcgaaacctactccaataatagccgttgatgagcct 432 Query: 418 tccaaaggtttaaggatccaaggacgctcgataaaacaccgtagtttgtctgaagatttc 477 || ||||||||||| || ||||| ||||| ||||| || || |||||||| || || || Sbjct: 433 tcaaaaggtttaagaattcaagggcgctcaataaagcagcggagtttgtcggaggacttt 492 Query: 478 tggagtacaagtccacgtgaaatggagaacagtgccttgcagtcacagcgtagtatgtct 537 |||||| |||| || | | ||||||||| |||||| |||| || |||||||| |||||| Sbjct: 493 tggagttcaagcccgccgggaatggagaatagtgccatgcaatctcagcgtagcatgtct 552 Query: 538 tccattagcacagcagcacaatctagtgaacagcatggagctggaagtagcagcaaccca 597 || || || || ||||||||||| || || |||||||||||||||||||||| ||||||| Sbjct: 553 tcaatcagtacggcagcacaatcgagcgatcagcatggagctggaagtagcaccaaccca 612 Query: 598 aatgagtttgtaaatcaaggtcttctactctggaaccagactagacagcagtgggttgga 657 |||||||||||||||||||| ||||| || |||||||||||||| || |||||||||||| Sbjct: 613 aatgagtttgtaaatcaaggacttctcctgtggaaccagactaggcaacagtgggttgga 672 Query: 658 aacagaaggcttaattctcagcgtcaaaagacccgggaaccaaaaataggttggaatgct 717 |||||||||| |||||||||| |||| | | || || ||||||||| ||||||||||| Sbjct: 673 aacagaaggcacaattctcagcttcaacaacctcgagagccaaaaataagttggaatgct 732 Query: 718 acatatgagagcctgctaggaagcaccaagacatttgcacaaccgatccctcttggtgaa 777 |||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 733 acatatgagagccttctaggaagcacaaaaccatttccacaagcgatccctcttggtgaa 792 Query: 778 atggtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 793 atggtagatttcctcgtggacggctgggagcaggaaggcctatatgattag 843
>ref|NM_001052758.1| Oryza sativa (japonica cultivar-group) Os02g0201000 (Os02g0201000) mRNA, partial cds Length = 2229 Score = 500 bits (252), Expect = e-138 Identities = 465/536 (86%), Gaps = 5/536 (0%) Strand = Plus / Plus Query: 298 ccggatgctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcc 357 |||||||||||||||||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 247 ccggatgctatgctgctaggctgctcgtccctgacgtcgtgggtgcgtcgcctcgtcgcc 306 Query: 358 tgcgtgg-----gaaattgttttggatgtgcgaagtctacacctataacagctgttgatg 412 ||||| | |||||||||||||||||||||| |||| || |||| ||| ||||||| Sbjct: 307 tgcgttggagcagaaattgttttggatgtgcgaaacctactccaataatagccgttgatg 366 Query: 413 agccttccaaaggtttaaggatccaaggacgctcgataaaacaccgtagtttgtctgaag 472 ||||||| ||||||||||| || ||||| ||||| ||||| || || |||||||| || | Sbjct: 367 agccttcaaaaggtttaagaattcaagggcgctcaataaagcagcggagtttgtcggagg 426 Query: 473 atttctggagtacaagtccacgtgaaatggagaacagtgccttgcagtcacagcgtagta 532 | || |||||| |||| || | | ||||||||| |||||| |||| || |||||||| | Sbjct: 427 acttttggagttcaagcccgccgggaatggagaatagtgccatgcaatctcagcgtagca 486 Query: 533 tgtcttccattagcacagcagcacaatctagtgaacagcatggagctggaagtagcagca 592 ||||||| || || || ||||||||||| || || |||||||||||||||||||||| || Sbjct: 487 tgtcttcaatcagtacggcagcacaatcgagcgatcagcatggagctggaagtagcacca 546 Query: 593 acccaaatgagtttgtaaatcaaggtcttctactctggaaccagactagacagcagtggg 652 ||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||| Sbjct: 547 acccaaatgagtttgtaaatcaaggacttctcctgtggaaccagactaggcaacagtggg 606 Query: 653 ttggaaacagaaggcttaattctcagcgtcaaaagacccgggaaccaaaaataggttgga 712 ||||||||||||||| ||||||||||||||| | | || || ||||||||| |||||| Sbjct: 607 ttggaaacagaaggcacaattctcagcgtcaacaacctcgagagccaaaaataagttgga 666 Query: 713 atgctacatatgagagcctgctaggaagcaccaagacatttgcacaaccgatccctcttg 772 ||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||| Sbjct: 667 atgctacatatgagagccttctaggaagcacaaaaccatttccacaagcgatccctcttg 726 Query: 773 gtgaaatggtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 727 gtgaaatggtagatttcctcgtggacggctgggagcaggaaggcctatatgattag 782
>dbj|AK064792.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C11, full insert sequence Length = 1045 Score = 500 bits (252), Expect = e-138 Identities = 465/536 (86%), Gaps = 5/536 (0%) Strand = Plus / Plus Query: 298 ccggatgctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcc 357 |||||||||||||||||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 273 ccggatgctatgctgctaggctgctcgtccctgacgtcgtgggtgcgtcgcctcgtcgcc 332 Query: 358 tgcgtgg-----gaaattgttttggatgtgcgaagtctacacctataacagctgttgatg 412 ||||| | |||||||||||||||||||||| |||| || |||| ||| ||||||| Sbjct: 333 tgcgttggagcagaaattgttttggatgtgcgaaacctactccaataatagccgttgatg 392 Query: 413 agccttccaaaggtttaaggatccaaggacgctcgataaaacaccgtagtttgtctgaag 472 ||||||| ||||||||||| || ||||| ||||| ||||| || || |||||||| || | Sbjct: 393 agccttcaaaaggtttaagaattcaagggcgctcaataaagcagcggagtttgtcggagg 452 Query: 473 atttctggagtacaagtccacgtgaaatggagaacagtgccttgcagtcacagcgtagta 532 | || |||||| |||| || | | ||||||||| |||||| |||| || |||||||| | Sbjct: 453 acttttggagttcaagcccgccgggaatggagaatagtgccatgcaatctcagcgtagca 512 Query: 533 tgtcttccattagcacagcagcacaatctagtgaacagcatggagctggaagtagcagca 592 ||||||| || || || ||||||||||| || || |||||||||||||||||||||| || Sbjct: 513 tgtcttcaatcagtacggcagcacaatcgagcgatcagcatggagctggaagtagcacca 572 Query: 593 acccaaatgagtttgtaaatcaaggtcttctactctggaaccagactagacagcagtggg 652 ||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||| Sbjct: 573 acccaaatgagtttgtaaatcaaggacttctcctgtggaaccagactaggcaacagtggg 632 Query: 653 ttggaaacagaaggcttaattctcagcgtcaaaagacccgggaaccaaaaataggttgga 712 ||||||||||||||| ||||||||||||||| | | || || ||||||||| |||||| Sbjct: 633 ttggaaacagaaggcacaattctcagcgtcaacaacctcgagagccaaaaataagttgga 692 Query: 713 atgctacatatgagagcctgctaggaagcaccaagacatttgcacaaccgatccctcttg 772 ||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||| Sbjct: 693 atgctacatatgagagccttctaggaagcacaaaaccatttccacaagcgatccctcttg 752 Query: 773 gtgaaatggtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 753 gtgaaatggtagatttcctcgtggacggctgggagcaggaaggcctatatgattag 808
>dbj|AK106682.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B07, full insert sequence Length = 2229 Score = 484 bits (244), Expect = e-133 Identities = 463/536 (86%), Gaps = 5/536 (0%) Strand = Plus / Plus Query: 298 ccggatgctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcc 357 |||||||||||||||||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 247 ccggatgctatgctgctaggctgctcgtccctgacgtcgtgggtgcgtcgcctcgtcgcc 306 Query: 358 tgcgtgg-----gaaattgttttggatgtgcgaagtctacacctataacagctgttgatg 412 | ||| | |||||||||||||||||||||| |||| || |||| ||| ||||||| Sbjct: 307 tacgttggagcagaaattgttttggatgtgcgaaacctactccaataatagccgttgatg 366 Query: 413 agccttccaaaggtttaaggatccaaggacgctcgataaaacaccgtagtttgtctgaag 472 ||||||| ||||||||||| || ||||| ||||| ||||| || || |||||||| || | Sbjct: 367 agccttcaaaaggtttaagaattcaagggcgctcaataaagcagcggagtttgtcggagg 426 Query: 473 atttctggagtacaagtccacgtgaaatggagaacagtgccttgcagtcacagcgtagta 532 | || |||||| |||| || | | ||||||||| |||||| |||| || |||||||| | Sbjct: 427 acttttggagttcaagcccgccgggaatggagaatagtgccatgcaatctcagcgtagca 486 Query: 533 tgtcttccattagcacagcagcacaatctagtgaacagcatggagctggaagtagcagca 592 ||||||| || || || ||||||||||| || || |||||||||||||||||||||| || Sbjct: 487 tgtcttcaatcagtacggcagcacaatcgagcgatcagcatggagctggaagtagcacca 546 Query: 593 acccaaatgagtttgtaaatcaaggtcttctactctggaaccagactagacagcagtggg 652 ||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||| Sbjct: 547 acccaaatgagtttgtaaatcaaggacttctcctgtggaaccagactaggcaacagtggg 606 Query: 653 ttggaaacagaaggcttaattctcagcgtcaaaagacccgggaaccaaaaataggttgga 712 ||||||||||||||| |||||||||||||| | | || || ||||||||| |||||| Sbjct: 607 ttggaaacagaaggcacaattctcagcgtcagcaacctcgagagccaaaaataagttgga 666 Query: 713 atgctacatatgagagcctgctaggaagcaccaagacatttgcacaaccgatccctcttg 772 ||||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||| Sbjct: 667 atgctacatatgagagccttctaggaagcacaaaaccatttccacaagcgatccctcttg 726 Query: 773 gtgaaatggtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 727 gtgaaatggtagatttcctcgtggacggctgggagcaggaaggcctatatgattag 782
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 210 bits (106), Expect = 7e-51 Identities = 217/254 (85%) Strand = Plus / Minus Query: 365 gaaattgttttggatgtgcgaagtctacacctataacagctgttgatgagccttccaaag 424 |||||||||||||||||||||| |||| || |||| ||| |||||||||||||| |||| Sbjct: 5642884 gaaattgttttggatgtgcgaaacctactccaataatagccgttgatgagccttcaaaag 5642825 Query: 425 gtttaaggatccaaggacgctcgataaaacaccgtagtttgtctgaagatttctggagta 484 ||||||| || ||||| ||||| ||||| || || |||||||| || || || |||||| Sbjct: 5642824 gtttaagaattcaagggcgctcaataaagcagcggagtttgtcggaggacttttggagtt 5642765 Query: 485 caagtccacgtgaaatggagaacagtgccttgcagtcacagcgtagtatgtcttccatta 544 |||| || | | ||||||||| |||||| |||| || |||||||| |||||||| || | Sbjct: 5642764 caagcccgccgggaatggagaatagtgccatgcaatctcagcgtagcatgtcttcaatca 5642705 Query: 545 gcacagcagcacaatctagtgaacagcatggagctggaagtagcagcaacccaaatgagt 604 | || ||||||||||| || || |||||||||||||||||||||| |||||||||||||| Sbjct: 5642704 gtacggcagcacaatcgagcgatcagcatggagctggaagtagcaccaacccaaatgagt 5642645 Query: 605 ttgtaaatcaaggt 618 |||||||||||||| Sbjct: 5642644 ttgtaaatcaaggt 5642631 Score = 99.6 bits (50), Expect = 2e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 775 gaaatggtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 5641070 gaaatggtagatttcctcgtggacggctgggagcaggaaggcctatatgattag 5641017 Score = 89.7 bits (45), Expect = 2e-14 Identities = 63/69 (91%) Strand = Plus / Minus Query: 707 gttggaatgctacatatgagagcctgctaggaagcaccaagacatttgcacaaccgatcc 766 ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| |||||| Sbjct: 5641234 gttggaatgctacatatgagagccttctaggaagcacaaaaccatttccacaagcgatcc 5641175 Query: 767 ctcttggtg 775 ||||||||| Sbjct: 5641174 ctcttggtg 5641166 Score = 83.8 bits (42), Expect = 1e-12 Identities = 60/66 (90%) Strand = Plus / Minus Query: 619 cttctactctggaaccagactagacagcagtgggttggaaacagaaggcttaattctcag 678 ||||| || |||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 5642006 cttctcctgtggaaccagactaggcaacagtgggttggaaacagaaggcacaattctcag 5641947 Query: 679 cgtcaa 684 |||||| Sbjct: 5641946 cgtcaa 5641941 Score = 73.8 bits (37), Expect = 1e-09 Identities = 58/65 (89%) Strand = Plus / Minus Query: 298 ccggatgctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcc 357 |||||||||||||||||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 5644297 ccggatgctatgctgctaggctgctcgtccctgacgtcgtgggtgcgtcgcctcgtcgcc 5644238 Query: 358 tgcgt 362 ||||| Sbjct: 5644237 tgcgt 5644233 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 11683522 gggtgcgccgcctcgtcgcct 11683542
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 210 bits (106), Expect = 7e-51 Identities = 217/254 (85%) Strand = Plus / Minus Query: 365 gaaattgttttggatgtgcgaagtctacacctataacagctgttgatgagccttccaaag 424 |||||||||||||||||||||| |||| || |||| ||| |||||||||||||| |||| Sbjct: 70620 gaaattgttttggatgtgcgaaacctactccaataatagccgttgatgagccttcaaaag 70561 Query: 425 gtttaaggatccaaggacgctcgataaaacaccgtagtttgtctgaagatttctggagta 484 ||||||| || ||||| ||||| ||||| || || |||||||| || || || |||||| Sbjct: 70560 gtttaagaattcaagggcgctcaataaagcagcggagtttgtcggaggacttttggagtt 70501 Query: 485 caagtccacgtgaaatggagaacagtgccttgcagtcacagcgtagtatgtcttccatta 544 |||| || | | ||||||||| |||||| |||| || |||||||| |||||||| || | Sbjct: 70500 caagcccgccgggaatggagaatagtgccatgcaatctcagcgtagcatgtcttcaatca 70441 Query: 545 gcacagcagcacaatctagtgaacagcatggagctggaagtagcagcaacccaaatgagt 604 | || ||||||||||| || || |||||||||||||||||||||| |||||||||||||| Sbjct: 70440 gtacggcagcacaatcgagcgatcagcatggagctggaagtagcaccaacccaaatgagt 70381 Query: 605 ttgtaaatcaaggt 618 |||||||||||||| Sbjct: 70380 ttgtaaatcaaggt 70367 Score = 99.6 bits (50), Expect = 2e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 775 gaaatggtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 68806 gaaatggtagatttcctcgtggacggctgggagcaggaaggcctatatgattag 68753 Score = 89.7 bits (45), Expect = 2e-14 Identities = 63/69 (91%) Strand = Plus / Minus Query: 707 gttggaatgctacatatgagagcctgctaggaagcaccaagacatttgcacaaccgatcc 766 ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| |||||| Sbjct: 68970 gttggaatgctacatatgagagccttctaggaagcacaaaaccatttccacaagcgatcc 68911 Query: 767 ctcttggtg 775 ||||||||| Sbjct: 68910 ctcttggtg 68902 Score = 83.8 bits (42), Expect = 1e-12 Identities = 60/66 (90%) Strand = Plus / Minus Query: 619 cttctactctggaaccagactagacagcagtgggttggaaacagaaggcttaattctcag 678 ||||| || |||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 69742 cttctcctgtggaaccagactaggcaacagtgggttggaaacagaaggcacaattctcag 69683 Query: 679 cgtcaa 684 |||||| Sbjct: 69682 cgtcaa 69677 Score = 73.8 bits (37), Expect = 1e-09 Identities = 58/65 (89%) Strand = Plus / Minus Query: 298 ccggatgctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcc 357 |||||||||||||||||||||||| ||| || | ||||||||||| |||||||||||| Sbjct: 72033 ccggatgctatgctgctaggctgctcgtccctgacgtcgtgggtgcgtcgcctcgtcgcc 71974 Query: 358 tgcgt 362 ||||| Sbjct: 71973 tgcgt 71969
>gb|AY110285.1| Zea mays CL47158_1 mRNA sequence Length = 860 Score = 101 bits (51), Expect = 5e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 580 ggaagtagcagcaacccaaatgagtttgtaaatcaaggtcttctactctggaaccagact 639 ||||||||||||||||| ||||||||| | |||||||||||| | |||||||||||||| Sbjct: 457 ggaagtagcagcaacccgaatgagtttatgaatcaaggtcttatgctctggaaccagacc 398 Query: 640 agacagcagtgggttggaa 658 ||||| ||||||||||||| Sbjct: 397 agacaacagtgggttggaa 379 Score = 79.8 bits (40), Expect = 2e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 721 tatgagagcctgctaggaagcaccaagacatttgcacaaccgatccctcttggtgaaatg 780 ||||| || ||||||||||||| ||| |||| | |||||||| |||||||| |||||| Sbjct: 316 tatgaaagtctgctaggaagcaataagccattctcccaaccgatacctcttggcgaaatg 257 Query: 781 gtagatttcctcgtggacggctgggagcaggagggcctatatgattag 828 |||||||| || ||||||| |||||||| || ||||| ||||||||| Sbjct: 256 gtagatttgcttgtggacgcttgggagcaagaaggcctttatgattag 209 Score = 58.0 bits (29), Expect = 7e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 304 gctatgctgctaggctgcgggtcgctctcctcgtgggtgcgccgcctcgtcgcctgcgtg 363 ||||||||||| ||||| || | |||||| | |||||||||||||||||||| ||| || Sbjct: 736 gctatgctgctgagctgcaggaccctctccacctgggtgcgccgcctcgtcgcttgcatg 677 Query: 364 ggaaattgttttggatg 380 ||| ||| |||||||| Sbjct: 676 ggaggttgctttggatg 660
>gb|AF532620.1| Glycine max hypothetical protein mRNA, complete cds Length = 918 Score = 61.9 bits (31), Expect = 4e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 763 atccctcttggtgaaatggtagatttcctcgtggacggctgggagcaggagggcctata 821 |||||||||| ||||||||||||||| || |||||| ||||||||||| |||||||| Sbjct: 618 atccctcttgctgaaatggtagattttcttgtggacatatgggagcaggatggcctata 676
>gb|AC064853.6| Homo sapiens BAC clone RP11-185H21 from 2, complete sequence Length = 137247 Score = 48.1 bits (24), Expect = 0.063 Identities = 24/24 (100%) Strand = Plus / Minus Query: 104 gaattccaaattccaatccaagga 127 |||||||||||||||||||||||| Sbjct: 134849 gaattccaaattccaatccaagga 134826
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 240 catcggtggcggcgtcggcggggctgg 266 |||||||||||||||||||| |||||| Sbjct: 1502666 catcggtggcggcgtcggcgcggctgg 1502692
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 245 gtggcggcgtcggcggggctgg 266 |||||||||||||||||||||| Sbjct: 2978515 gtggcggcgtcggcggggctgg 2978536 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 15948570 gggtgcgccgcctcgtcgcct 15948550
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 tgggtgcgccgcctcgtcgcct 358 |||||||||||||||||||||| Sbjct: 21644865 tgggtgcgccgcctcgtcgcct 21644844
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 245 gtggcggcgtcggcggggctgg 266 |||||||||||||||||||||| Sbjct: 151577 gtggcggcgtcggcggggctgg 151598
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Plus Query: 245 gtggcggcgtcggcggggctgg 266 |||||||||||||||||||||| Sbjct: 29238 gtggcggcgtcggcggggctgg 29259
>gb|AC040163.3|AC040163 Homo sapiens chromosome 16 clone RP11-1M1, complete sequence Length = 176845 Score = 44.1 bits (22), Expect = 0.99 Identities = 25/26 (96%) Strand = Plus / Plus Query: 963 ttttgaagcaaatgtaacatattttt 988 |||| ||||||||||||||||||||| Sbjct: 90972 tttttaagcaaatgtaacatattttt 90997
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 tgggtgcgccgcctcgtcgcct 358 |||||||||||||||||||||| Sbjct: 75321 tgggtgcgccgcctcgtcgcct 75300
>dbj|AK227364.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-D05 Length = 910 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 485 tgtaaatcaaggtcttcttctttggaatcagac 517
>ref|NM_179336.1| Arabidopsis thaliana unknown protein (AT1G15350) mRNA, complete cds Length = 900 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 485 tgtaaatcaaggtcttcttctttggaatcagac 517
>ref|NM_179337.1| Arabidopsis thaliana unknown protein (AT1G15350) mRNA, complete cds Length = 911 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 496 tgtaaatcaaggtcttcttctttggaatcagac 528
>ref|NM_101404.1| Arabidopsis thaliana unknown protein (AT1G15350) mRNA, complete cds Length = 964 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 522 tgtaaatcaaggtcttcttctttggaatcagac 554
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 34390 gggtgcgccgcctcgtcgcct 34370
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 23894238 gggtgcgccgcctcgtcgcct 23894218
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 17744739 gggtgcgccgcctcgtcgcct 17744719
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 19970972 gggtgcgccgcctcgtcgcct 19970992
>gb|AC091939.3| Homo sapiens chromosome 5 clone RP11-32D16, complete sequence Length = 190346 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 826 tagctgcttaattaaagggtggtgg 850 |||||| |||||||||||||||||| Sbjct: 162281 tagctgtttaattaaagggtggtgg 162257
>gb|AC091609.2| Homo sapiens chromosome 1 clone RP11-109I2, complete sequence Length = 183521 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 699 aaaaataggttggaatgctac 719 ||||||||||||||||||||| Sbjct: 124117 aaaaataggttggaatgctac 124097
>gb|AY088679.1| Arabidopsis thaliana clone 9177 mRNA, complete sequence Length = 964 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 522 tgtaaatcaaggtcttcttctttggaatcagac 554
>dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0475C12 Length = 140863 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 20609 gggtgcgccgcctcgtcgcct 20589
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 109312 gggtgcgccgcctcgtcgcct 109332
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 129811 gggtgcgccgcctcgtcgcct 129831
>gb|BT003089.1| Arabidopsis thaliana At1g15350 gene, complete cds Length = 327 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 102 tgtaaatcaaggtcttcttctttggaatcagac 134
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 128613 gggtgcgccgcctcgtcgcct 128593
>emb|BX818051.1|CNS0ACLX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZG01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 924 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 606 tgtaaatcaaggtcttctactctggaaccagac 638 |||||||||||||||||| || ||||| ||||| Sbjct: 524 tgtaaatcaaggtcttcttctttggaatcagac 556
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144767 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gggtgcgccgcctcgtcgcct 358 ||||||||||||||||||||| Sbjct: 78945 gggtgcgccgcctcgtcgcct 78965 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,119,319 Number of extensions: 10099414 Number of successful extensions: 200194 Number of sequences better than 10.0: 34 Number of HSP's gapped: 200184 Number of HSP's successfully gapped: 46 Length of query: 1036 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1013 Effective length of database: 18,503,978,556 Effective search space: 18744530277228 Effective search space used: 18744530277228 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)