| Clone Name | FLbaf119h23 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g42374:12002.t005589:unspliced-genomic expressed protein| Length = 2163 Score = 131 bits (281), Expect(4) = 6e-78 Identities = 52/57 (91%), Positives = 53/57 (92%) Frame = +2 / +1 Query: 116 LVSSDDEIDYSVEPEFYDPAVDDVDERWAHKQRKGRTSDAVLSCPACFTTLCLDSQR 286 LVSSDDEIDYSVEPEFYDP +DDVDERW KQRKGRTSDAVLSCPACFTTLCLD QR Sbjct: 328 LVSSDDEIDYSVEPEFYDPDLDDVDERWVSKQRKGRTSDAVLSCPACFTTLCLDCQR 498 Score = 89.5 bits (189), Expect(4) = 6e-78 Identities = 37/43 (86%), Positives = 38/43 (88%) Frame = +2 / +3 Query: 284 RHEKYVNQYRAMFVCNCKVKTDQILREGKGKRKNRKVTAVDST 412 RHE YVNQYRAMFV NCKVKTDQILREGKGKRKNRK A DS+ Sbjct: 1587 RHETYVNQYRAMFVRNCKVKTDQILREGKGKRKNRKGKAADSS 1715 Score = 69.3 bits (145), Expect(4) = 6e-78 Identities = 36/49 (73%), Positives = 39/49 (79%) Frame = +1 / +2 Query: 406 FYCTRS*NQGASLSPCLLRDLLN*GRSV**R*SLPLL*CHS**LMNLVV 552 FY R * +G SLSPCLL LLN*G SV**R*SLPLL*CHS* L+ LV+ Sbjct: 1712 FYYIRR*KEGCSLSPCLL*GLLN*GWSV**R*SLPLL*CHS*QLLKLVL 1858 Score = 66.6 bits (139), Expect(4) = 6e-78 Identities = 28/41 (68%), Positives = 31/41 (75%) Frame = +2 / +2 Query: 5 ARLRRGVEQGFMEPEASKEAEKQPMEAEAGDPADPRDLVSS 127 AR G E+GFMEPE SKEA QPMEA+AG P DPR+L SS Sbjct: 32 ARAHGGGEEGFMEPEKSKEAASQPMEADAGGPVDPRELGSS 154 Score = 101 bits (216), Expect(4) = 2e-40 Identities = 40/58 (68%), Positives = 45/58 (77%) Frame = +2 / +3 Query: 374 KRKNRKVTAVDSTAPEVETKGPVYHPVCCEICSTEVGVYDEDEVYHFFNVIPSNS*TL 547 ++ + A ST E E KG VYHPVCCE+CSTEVGV+DEDEVYHFFNVIPSNS* L Sbjct: 1680 RKNRKGKAADSSTTSEGEKKGAVYHPVCCEVCSTEVGVFDEDEVYHFFNVIPSNS*NL 1853 Score = 65.2 bits (136), Expect(4) = 2e-40 Identities = 26/34 (76%), Positives = 27/34 (79%) Frame = +3 / +2 Query: 198 GRTSRGKGGLLTPCSAAPRVSPPCAWIPRGTKSM 299 G SRGKGGLLTPCSAAPR S PCAWI RG S+ Sbjct: 410 G*ASRGKGGLLTPCSAAPRASLPCAWIARGCLSL 511 Score = 40.9 bits (83), Expect(4) = 2e-40 Identities = 18/25 (72%), Positives = 20/25 (80%) Frame = +3 / +1 Query: 285 GTKSM*TSTVRCLCATARSRLIRFY 359 G + M* STV+C ATARSRLIRFY Sbjct: 1588 GMRRM*ISTVQCSFATARSRLIRFY 1662 Score = 21.7 bits (41), Expect(4) = 2e-40 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +1 / +1 Query: 1 GSETAPRSRTRIHGA 45 GSE+A R R HGA Sbjct: 28 GSESARRRRGGFHGA 72 Score = 71.6 bits (150), Expect(5) = 1e-39 Identities = 29/35 (82%), Positives = 29/35 (82%) Frame = -1 / -1 Query: 286 PLGIQAQGGETRGAAEHGVRSPPFPLLVRPALIDI 182 PL IQAQG E RGAAEHGVRSPPFPLL P LIDI Sbjct: 498 PLAIQAQGSEARGAAEHGVRSPPFPLLAHPPLIDI 394 Score = 71.2 bits (149), Expect(5) = 1e-39 Identities = 35/53 (66%), Positives = 40/53 (75%) Frame = -1 / -2 Query: 565 STKTALQGS*VTRNDIKEVVDFIFIIHSDLS*ADLATNRVINWPLGFNFWCSR 407 +T + Q S V RNDIKEVV+FIFI HS+LS*A+L TNRVIN L F F CSR Sbjct: 1871 TTHSEEQVSGVARNDIKEVVNFIFIKHSNLS*ANLTTNRVINCTLLFTF*CSR 1713 Score = 47.8 bits (98), Expect(5) = 1e-39 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = -3 / -1 Query: 359 VESDQS*PCSCTQTSHGTGLHTFRA 285 VESDQS*PCSC +T HGT LHT A Sbjct: 1662 VESDQS*PCSCERTLHGTDLHTSHA 1588 Score = 32.2 bits (64), Expect(5) = 1e-39 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -2 / -1 Query: 78 IGCFSASLDASGSMNPCSTPRRSLA 4 IG +ASLD SGSM P S P +LA Sbjct: 105 IGWLAASLDFSGSMKPSSPPPCALA 31 Score = 22.6 bits (43), Expect(5) = 1e-39 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = -3 / -3 Query: 137 SHRRWTLGREDL 102 SHRRWTL ++ Sbjct: 349 SHRRWTLTNSEV 314 Score = 65.7 bits (137), Expect(3) = 6e-28 Identities = 26/31 (83%), Positives = 27/31 (87%) Frame = -2 / -2 Query: 285 LWESRHKVVKHAGQLSTASEVRPFLCLCAQR 193 LW+SRHKVVKHAGQLSTASEV PFLCL R Sbjct: 497 LWQSRHKVVKHAGQLSTASEVLPFLCLLTHR 405 Score = 55.6 bits (115), Expect(3) = 6e-28 Identities = 29/50 (58%), Positives = 30/50 (60%) Frame = -2 / -3 Query: 546 KVHELLGMTLKKWXXXXXXXXXXSVEQISQQTG**TGPLVSTSGAVESTA 397 K ELLGMTLKKW SVEQ SQQTG**T P S S VE +A Sbjct: 1852 KFQELLGMTLKKW*TSSSSNTPTSVEQTSQQTG**TAPFFSPSDVVEESA 1703 Score = 46.9 bits (96), Expect(3) = 6e-28 Identities = 21/24 (87%), Positives = 21/24 (87%) Frame = -2 / -3 Query: 354 I*SVLTLQLHTNIARYWFTYFSCL 283 I*SVLTLQL TNIARY FTY SCL Sbjct: 1657 I*SVLTLQLRTNIARY*FTYVSCL 1586 Score = 53.3 bits (110), Expect(3) = 1e-24 Identities = 25/47 (53%), Positives = 27/47 (57%) Frame = +3 / +1 Query: 414 HQKLKPRGQFITLFVARSAQLRSECXXXXXXXXXXXXFLVTHEPCSA 554 HQK+K R QFITLFV R AQLR EC FL T E CS+ Sbjct: 1720 HQKVKRRVQFITLFVVRFAQLRLECLMKMKFTTSLMSFLATPETCSS 1860 Score = 52.8 bits (109), Expect(3) = 1e-24 Identities = 21/25 (84%), Positives = 22/25 (88%) Frame = +1 / +3 Query: 211 EERADF*RRAQLPRVFHHLVPGFPE 285 EER DF*RRAQLPRV H+LVPG PE Sbjct: 423 EEREDF*RRAQLPRVLHYLVPGLPE 497 Score = 51.0 bits (105), Expect(3) = 1e-24 Identities = 20/28 (71%), Positives = 24/28 (85%) Frame = +1 / +2 Query: 328 QLQGQD*SDSTGGERKKEESESNGC*FY 411 QLQGQD*SDSTGGER+ E+ + GC*F+ Sbjct: 1631 QLQGQD*SDSTGGERQTEKPQGKGC*FF 1714 Score = 54.7 bits (113), Expect(3) = 1e-13 Identities = 24/28 (85%), Positives = 27/28 (96%) Frame = -3 / -3 Query: 284 SGNPGTRW*NTRGS*ARRQKSALSSACA 201 SGNPGTR *+TRGS*ARRQKS+LSSAC+ Sbjct: 496 SGNPGTR**STRGS*ARRQKSSLSSACS 413 Score = 33.1 bits (66), Expect(3) = 1e-13 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -3 / -1 Query: 479 PQLSRSRNKQGDKLAPWF 426 PQLS+ NKQGDKL P F Sbjct: 1785 PQLSKPHNKQGDKLHPSF 1732 Score = 31.3 bits (62), Expect(3) = 1e-13 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = -1 / -2 Query: 340 DLAVAHKHRTVLVYILFVP 284 DLAVA++H TVL+YI +P Sbjct: 1643 DLAVANEHCTVLIYIRLMP 1587
>LOC_Os02g26790:12002.t005522:unspliced-genomic expressed protein| Length = 977 Score = 36.3 bits (73), Expect(2) = 0.073 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +2 / +1 Query: 44 PEASKEAEKQPMEAEAGDPADPRDLVSSDDEIDYSVEPEFYDPAVDDVD 190 P+ + + ++A+ DPADP D D D +V+ + DPA D D Sbjct: 157 PDPAVDPSDPAVDADPSDPADPADDADDSDPSDPAVDADPSDPADDADD 303 Score = 21.7 bits (41), Expect(2) = 0.073 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +2 / +1 Query: 512 FFNVIPSNS*TL*CRFCRSRADVVEWEL 595 FF ++ S T+ CR++ V W L Sbjct: 670 FFFLVLSIVVTMSVHLCRAKRPAVRWRL 753
>LOC_Os05g13490:12005.t01127:unspliced-genomic BURP-domain containing protein, putative| Length = 1330 Score = 31.8 bits (63), Expect(2) = 0.11 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +2 / +3 Query: 365 GKGKRKNRKVTAVDSTAPEVETKGPVYHPVCCEICST 475 G G+R++R+ TA S A T+G + P C ++ Sbjct: 1185 GPGRRRSRRATATRSPAWRRRTRGSAWRPGACRCATS 1295 Score = 23.1 bits (44), Expect(2) = 0.11 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = +3 / +3 Query: 231 TPCSAAPRVSPP 266 TPCS A R PP Sbjct: 1119 TPCSGATRPRPP 1154
>LOC_Os06g14010:12006.t01276:unspliced-genomic MYB transcription factor TaMYB1, putative| Length = 510 Score = 35.0 bits (70), Expect = 0.59 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 / +3 Query: 295 LFVPLGIQAQGGETRGAAEHGVRSPP 218 L P G+ A+GG GA HG R PP Sbjct: 90 LQAPAGVDARGGRRPGAPRHGARLPP 167
>LOC_Os04g07260:12004.t00600:unspliced-genomic hypothetical protein| Length = 4572 Score = 34.5 bits (69), Expect = 0.80 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 / -2 Query: 446 HPVCCEICSTEVGVYDEDEVYHFFNV 523 HP C C ++ V D E+YHF N+ Sbjct: 1817 HPSFCACCLKKIDVIDRYEIYHFINM 1740
>LOC_Os08g10810:12008.t00963:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 2529 Score = 34.1 bits (68), Expect = 1.1 Identities = 13/18 (72%), Positives = 13/18 (72%) Frame = +3 / -3 Query: 198 GRTSRGKGGLLTPCSAAP 251 GR RGKGG TPCS AP Sbjct: 2002 GRRRRGKGGRATPCSYAP 1949
>LOC_Os11g01720:12011.t00068:unspliced-genomic expressed protein| Length = 1374 Score = 33.1 bits (66), Expect = 2.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 / +3 Query: 228 LTPCSAAPRVSPPCAWIPRGTKSM*TST 311 LTP A SPPC W PR + S +S+ Sbjct: 549 LTPTPATATASPPCTWPPRTSASTWSSS 632
>LOC_Os02g12760:12002.t01073:unspliced-genomic salicylic acid-induced fragment 1 protein, putative, expressed| Length = 2767 Score = 33.1 bits (66), Expect = 2.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 / +3 Query: 204 TSRGKGGLLTPCSAAPRVSPPCAW 275 T R +GG P SAA PPC W Sbjct: 2238 TGRCRGGRCAPTSAASAAPPPCPW 2309
>LOC_Os06g03510:12006.t00243:unspliced-genomic hypothetical protein| Length = 1777 Score = 26.3 bits (51), Expect(2) = 2.2 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +2 / -3 Query: 113 DLVSSDDEIDYSVEPEFYDPAVDDVDERWAHKQRKGRT 226 DL D + ++ P VD RW ++R GRT Sbjct: 1601 DLGGQTDRPIHPRRQRWWTPRHGGVDPRWRKRRRGGRT 1488 Score = 24.0 bits (46), Expect(2) = 2.2 Identities = 10/33 (30%), Positives = 15/33 (45%) Frame = +3 / -2 Query: 234 PCSAAPRVSPPCAWIPRGTKSM*TSTVRCLCAT 332 PC ++P S CA P ++ R C+T Sbjct: 1455 PCPSSPTASFTCATFPWAPTRRSGTSPRAACST 1357
>LOC_Os08g34760:12008.t03216:unspliced-genomic expressed protein| Length = 7223 Score = 32.7 bits (65), Expect = 2.9 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 / -2 Query: 231 TPCSAAPRVSPPCAWIP 281 +PCSA P V PP W+P Sbjct: 6955 SPCSATPPVPPPTEWLP 6905
>LOC_Os02g12480:12002.t01046:unspliced-genomic expressed protein| Length = 4999 Score = 32.7 bits (65), Expect = 2.9 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +3 / -2 Query: 195 AGRTSRGKGGLLTPCSAAP 251 +GR SRG G +TPC AAP Sbjct: 1866 SGRRSRGASGEITPCHAAP 1810
>LOC_Os03g04080:12003.t00289:unspliced-genomic expressed protein| Length = 701 Score = 32.7 bits (65), Expect = 2.9 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +2 / +3 Query: 359 REGKGKRKNRKVTAVDSTAPEVETKGPVYHPVCCEICSTEVGV 487 R G G+R+ + A P PV HPV C +C GV Sbjct: 336 RPGGGRRQAQARAAAVHRRPRPRHHRPVLHPVVCCVCPCRDGV 464
>LOC_Os07g38130:12007.t03481:unspliced-genomic polygalacturonase inhibitor 1 precursor, putative, expressed| Length = 1456 Score = 32.2 bits (64), Expect = 3.9 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 / +3 Query: 204 TSRGKGGLLTPCSAAPRVSPPCAWIPRGTKSM*TS 308 TSR TP S++P P W RGT S TS Sbjct: 720 TSRTTASPATPPSSSPPAGPSARWTSRGTTSTSTS 824
>LOC_Os05g34370:12005.t03031:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2052 Score = 32.2 bits (64), Expect = 3.9 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +3 / +1 Query: 210 RGKGGLLTPCSAAPRVSPP 266 RGKGG PCSA R PP Sbjct: 1129 RGKGGSFPPCSATARKRPP 1185
>LOC_Os02g20070:12002.t01799:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2209 Score = 32.2 bits (64), Expect = 3.9 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +2 / +3 Query: 14 RRGVEQGFMEPEASKEAEKQPMEAEAGDPADPRDLVSSDDEIDYSVEP 157 RR + QG EP+ EA+ + R LV SDDE D + +P Sbjct: 1023 RRQIGQGSGEPKIRSEAQSNTSNPVGQSDSRKRKLVLSDDEGDDAKKP 1166
>LOC_Os12g39840:12012.t03663:unspliced-genomic expressed protein| Length = 3123 Score = 30.9 bits (61), Expect(2) = 4.1 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +2 / +3 Query: 401 VDSTAPEVETKGPVYHPVCCEICSTEVGVYDEDEVYHFFNVIP 529 ++ST + + K +Y CC+ C ++ E+ HFF+++P Sbjct: 1956 LESTKHKAQKKIDLYTAHCCQSCYFQILPAGENLNEHFFSLLP 2084 Score = 22.6 bits (43), Expect(2) = 4.1 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = +2 / +3 Query: 599 CLLMISRQS*ACLPSWKLYSGII 667 C +++ + LPSW + GII Sbjct: 2607 CFVVVPERQQRFLPSWAPHIGII 2675
>LOC_Os10g34480:12010.t02744:unspliced-genomic cytochrome P450 86A2, putative, expressed| Length = 4422 Score = 31.8 bits (63), Expect = 5.4 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +3 / -1 Query: 231 TPCSAAPRVSPPCAW 275 TPCS PR SP C W Sbjct: 3528 TPCSPPPRCSPSCPW 3484
>LOC_Os10g34470:12010.t02743:unspliced-genomic metal-dependent phosphohydrolase, HD subdomain, putative, expressed| Length = 5236 Score = 31.8 bits (63), Expect = 5.4 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +3 / +1 Query: 231 TPCSAAPRVSPPCAW 275 TPCS PR SP C W Sbjct: 4330 TPCSPPPRCSPSCPW 4374
>LOC_Os09g37520:12009.t03226:unspliced-genomic expressed protein| Length = 5975 Score = 31.8 bits (63), Expect = 5.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 / -3 Query: 210 RGKGGLLTPCSAAPRVSPP 266 RG+ +PCSAAPR PP Sbjct: 537 RGRAAPTSPCSAAPRTPPP 481
>LOC_Os01g38120:12001.t03350:unspliced-genomic conserved hypothetical protein| Length = 1639 Score = 31.8 bits (63), Expect = 5.4 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +3 / +1 Query: 210 RGKGGLLTPCSAAPRVSPPCAWIPRGTKSM*TST 311 R +G P + RVSP C RGT S * ST Sbjct: 1075 RRRGRFCVPANCGRRVSPSCGGARRGTGST*RST 1176
>LOC_Os08g23410:12008.t02113:unspliced-genomic rubredoxin, putative, expressed| Length = 1312 Score = 31.8 bits (63), Expect = 5.4 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = -1 / +2 Query: 280 GIQAQGGETRGAAEHGVRSPPFPLLVRP 197 G A GGE RGA GVR P + VRP Sbjct: 494 GPAAAGGEVRGAEHGGVRVPVVRVPVRP 577
>LOC_Os04g04790:12004.t00363:unspliced-genomic hypothetical protein| Length = 3825 Score = 31.3 bits (62), Expect = 7.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 / +3 Query: 198 GRTSRGKGGLLTPCSAAPRVSPPCAWIPR 284 G RG+GG +P PR CAW PR Sbjct: 168 GGWCRGEGGTGSPTRGTPRRQWGCAWWPR 254
>LOC_Os03g57620:12003.t05026:unspliced-genomic hypothetical protein| Length = 2072 Score = 31.3 bits (62), Expect = 7.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 / +1 Query: 198 GRTSRGKGGLLTPCSAAPRVSPPCAWIPRGTKSM*TSTVR 317 G +R + G P AAP PC + R T++M S V+ Sbjct: 1714 GADARDQPGRAAPWHAAPSRPVPCVHVSRSTRAMQASPVK 1833
>LOC_Os01g08470:12001.t00725:unspliced-genomic protein binding protein, putative, expressed| Length = 2275 Score = 31.3 bits (62), Expect = 7.4 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = +3 / +2 Query: 201 RTSRGKGGLLTPCSAAPRVSPPCAWIPRGTKSM*TSTVRCLCATARS 341 RT R + G P S P SPP W P + S RC RS Sbjct: 272 RTWRCRRGGGRPSSPTPATSPPTGWAPTCATTPACSARRCRGIAGRS 412
>LOC_Os03g17210:12003.t01500:unspliced-genomic expressed protein| Length = 7000 Score = 31.3 bits (62), Expect = 7.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 / +3 Query: 77 MEAEAGDPADPRDLVSSDDEIDYSVEP 157 ++ EA D AD +L+SSDDE+ +P Sbjct: 5688 LKMEATDSADDTELISSDDELTTESQP 5768 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 217,465,261 Number of extensions: 2890650 Number of successful extensions: 15662 Number of sequences better than 10.0: 25 Length of query: 236 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 187 Effective length of database: 52,856,264 Effective search space: 9884121368 Effective search space used: 9884121368 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)