>P26585:HMGL_SOYBN HMG1/2-like protein - Glycine max (Soybean)|
          Length = 152
 Score = 44.7 bits (104), Expect = 0.002
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGYTTPTRIRRVEAGEG 2743
            VGKA+G KWK++SD +KA Y  K+E+ KV Y    R    +  EG
Sbjct: 75   VGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119

>P40621:HMGL_WHEAT HMG1/2-like protein - Triticum aestivum (Wheat)|
          Length = 161

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            VGKA+GE+WKSLS+ +KA Y  KA +LK  Y
Sbjct: 73   VGKAAGERWKSLSESEKAPYVAKANKLKGEY 103

>P27347:MNB1B_MAIZE DNA-binding protein MNB1B - Zea mays (Maize)|
          Length = 157

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            VGKA+G++WKSLS+  KA Y  KA +LK+ Y
Sbjct: 72   VGKAAGDRWKSLSESDKAPYVAKANKLKLEY 102

>Q6CC79:NHP6_YARLI Nonhistone chromosomal protein 6 - Yarrowia lipolytica (Candida|
            lipolytica)
          Length = 103

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGYTTPTRIRRVEAGE 2740
            QVGKA GEKWK+L+D +K  Y  KA   K  Y       +  A E
Sbjct: 54   QVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDEKAAYKANAAE 98

>Q7S045:NHP6_NEUCR Nonhistone chromosomal protein 6 - Neurospora crassa|
          Length = 103

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGYTTPTRIRRVEAGE 2740
            QVGK  GE+WK+LSD ++A Y  KA   K  Y    +    EA E
Sbjct: 55   QVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAYNAEADE 99

>P40619:HMGL_IPONI HMG1/2-like protein - Ipomoea nil (Japanese morning glory) (Pharbitis|
            nil)
          Length = 144

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            VGKA G+KWK L+  +KA + +KAE+ K  Y
Sbjct: 67   VGKAGGDKWKQLTAAEKAPFISKAEKRKQEY 97

>Q75B82:NHP6_ASHGO Nonhistone chromosomal protein 6 - Ashbya gossypii (Yeast)|
            (Eremothecium gossypii)
          Length = 94

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVG+  GEKWK+LSD +K  Y  KAE  K  Y
Sbjct: 50   QVGRVLGEKWKALSDDEKQPYEAKAEADKKRY 81

>Q9LQU5:NUD18_ARATH Nudix hydrolase 18, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 176

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 257 MAVLVVRQGREQ*RCSASTGRRIVVGCIPYRV---CXXXXXXXXXXXXISL*KGHGMMFL 427
           M  LV R GR+  R +   GRR VVGCIPYR+                IS  KGH +MF 
Sbjct: 1   MVCLVSRTGRQSQRYNK--GRRQVVGCIPYRLKISSDGTISDEFEVLVISSQKGHALMFP 58

Query: 428 K 430
           K
Sbjct: 59  K 59

>P40620:HMGL_VICFA HMG1/2-like protein - Vicia faba (Broad bean)|
          Length = 149

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            VGKA GE+WKSLS+ +KA Y  +A + K  Y
Sbjct: 76   VGKACGEEWKSLSEEEKAPYVDRALKKKEEY 106

>Q6CVH3:NHP6_KLULA Nonhistone chromosomal protein 6 - Kluyveromyces lactis (Yeast)|
            (Candida sphaerica)
          Length = 93

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVG+  GEKWK+L++ +KA Y  KAE  K  Y
Sbjct: 47   QVGRILGEKWKALNEDEKAPYEAKAEADKKRY 78

>Q5B995:NHP6_EMENI Nonhistone chromosomal protein 6 - Emericella nidulans (Aspergillus|
            nidulans)
          Length = 106

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVGK  GEKWKSLSD ++  Y  KA   K  Y
Sbjct: 56   QVGKMLGEKWKSLSDKERKPYEDKAAADKKRY 87

>Q9UVL1:NHP6_CANAL Nonhistone chromosomal protein 6 - Candida albicans (Yeast)|
          Length = 92

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVGK  GEKWK+L+   K  Y  KAE  K  Y
Sbjct: 48   QVGKLLGEKWKALNSEDKLPYENKAEADKKRY 79

>Q2QI47:USH2A_MOUSE Usherin precursor - Mus musculus (Mouse)|
          Length = 5193

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 2322 HACTIVQAPVRPTSLSLVLMLASGAATLVHSGKWRT 2215
            H CT+++ P+ PT    V  L S A  +VHSG   T
Sbjct: 3415 HICTVMRGPLNPTGKKAVEGLCSAAEEIVHSGDVNT 3450

>Q9ZU95:NUD17_ARATH Nudix hydrolase 17, mitochondrial precursor - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 182

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 248 IRRMAVLVVRQGREQ*RCSASTGRRIVVGCIPYRV---CXXXXXXXXXXXXISL*KGHGM 418
           + +M  L  R GR+  R +   GRR VVGC+PYR                 IS  KGH +
Sbjct: 3   VEKMVCLASRTGRQFQRYNK--GRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHAL 60

Query: 419 MFLK 430
           MF K
Sbjct: 61  MFPK 64

>O54879:HMGB3_MOUSE High mobility group protein B3 - Mus musculus (Mouse)|
          Length = 200

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            V K  GE W +LSD +K  Y TKA +LK  Y
Sbjct: 123  VAKKLGEMWNNLSDNEKQPYVTKAAKLKEKY 153

>Q4WY33:NHP6_ASPFU Nonhistone chromosomal protein 6 - Aspergillus fumigatus (Sartorya|
            fumigata)
          Length = 104

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVGK  GE+WK+LSD ++  Y  KA   K  Y
Sbjct: 54   QVGKMLGERWKALSDSERRPYEEKAAADKKRY 85

>P11632:NHP6A_YEAST Nonhistone chromosomal protein 6A - Saccharomyces cerevisiae (Baker's|
            yeast)
          Length = 93

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVGK  GEKWK+L+  +K  Y  KA+  K  Y
Sbjct: 50   QVGKKLGEKWKALTPEEKQPYEAKAQADKKRY 81

>O15347:HMGB3_HUMAN High mobility group protein B3 - Homo sapiens (Human)|
          Length = 200

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 2609 VGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            V K  GE W +L+D +K  Y TKA +LK  Y
Sbjct: 123  VAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153

>Q4IQX3:NHP6_GIBZE Nonhistone chromosomal protein 6 - Gibberella zeae (Fusarium|
            graminearum)
          Length = 101

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 2606 QVGKASGEKWKSLSDVKKASYFTKAEQLKVGY 2701
            QVGK  GE+WK+L++ ++A Y  KA   K  Y
Sbjct: 53   QVGKLLGERWKALNEKQRAPYEAKAAADKKRY 84


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 467,602,045
Number of extensions: 9562654
Number of successful extensions: 22879
Number of sequences better than 10.0: 19
Number of HSP's gapped: 22863
Number of HSP's successfully gapped: 19
Length of query: 995
Length of database: 100,686,439
Length adjustment: 123
Effective length of query: 872
Effective length of database: 66,948,154
Effective search space: 58378790288
Effective search space used: 58378790288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)