ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf126m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q7XLX6:S1FA2_ORYSJ DNA-binding protein S1FA2 - Oryza sativa subs... 73 8e-13
2P42553:S1FA1_ORYSJ DNA-binding protein S1FA1 - Oryza sativa subs... 59 1e-08
3P42554:S1FA_MAIZE DNA-binding protein S1FA - Zea mays (Maize) 44 5e-04
4Q42337:S1FA2_ARATH DNA-binding protein S1FA2 - Arabidopsis thali... 36 0.14
5Q93VI0:S1FA3_ARATH DNA-binding protein S1FA3 - Arabidopsis thali... 35 0.32
6P42552:S1FA_SPIOL DNA-binding protein S1FA - Spinacia oleracea (... 34 0.41
7P42551:S1FA1_ARATH DNA-binding protein S1FA1 - Arabidopsis thali... 34 0.41
8Q96P88:GNRR2_HUMAN Gonadotropin-releasing hormone II receptor - ... 30 7.8

>Q7XLX6:S1FA2_ORYSJ DNA-binding protein S1FA2 - Oryza sativa subsp. japonica (Rice)|
          Length = 80
 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 40/80 (50%), Positives = 44/80 (55%)
 Frame = +1

Query: 145 MAEQFAESANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXX 324
           MA+QFA+SANNV+IEEVNKGLNPGMI              GNYALY+YAQ          
Sbjct: 1   MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKP 60

Query: 325 XXXXXXXXXXXXQGVSAPGE 384
                       QGVSAPGE
Sbjct: 61  VSKKKMKREKLKQGVSAPGE 80



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>P42553:S1FA1_ORYSJ DNA-binding protein S1FA1 - Oryza sativa subsp. japonica (Rice)|
          Length = 76

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 33/75 (44%), Positives = 37/75 (49%)
 Frame = +1

Query: 160 AESANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXXXXXXX 339
           A+ +NN+IIEEVNKGLNPG I              GNYALY+YAQ               
Sbjct: 2   ADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKK 61

Query: 340 XXXXXXXQGVSAPGE 384
                  QGVSAPGE
Sbjct: 62  LKREKLKQGVSAPGE 76



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>P42554:S1FA_MAIZE DNA-binding protein S1FA - Zea mays (Maize)|
          Length = 63

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 26/63 (41%), Positives = 27/63 (42%)
 Frame = +1

Query: 196 NKGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXXQGVSA 375
           NKGLNPGM+              GNYALY YAQ                      QGVSA
Sbjct: 1   NKGLNPGMVVXLVVASFLLIFFVGNYALYXYAQKTLPPKKKKPVSKKKLKKEKLKQGVSA 60

Query: 376 PGE 384
           PGE
Sbjct: 61  PGE 63



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>Q42337:S1FA2_ARATH DNA-binding protein S1FA2 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 76

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 22/73 (30%), Positives = 27/73 (36%)
 Frame = +1

Query: 166 SANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXXXXXXXXX 345
           SA   ++E   KGLNPG+I               NY +Y+YAQ                 
Sbjct: 6   SAGKAVVEA--KGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLK 63

Query: 346 XXXXXQGVSAPGE 384
                QGV  PGE
Sbjct: 64  REKLKQGVPVPGE 76



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>Q93VI0:S1FA3_ARATH DNA-binding protein S1FA3 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 73

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 20/63 (31%), Positives = 23/63 (36%)
 Frame = +1

Query: 196 NKGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXXQGVSA 375
           +KGLNPG+I              GN+ LY YAQ                      QGV  
Sbjct: 11  SKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQV 70

Query: 376 PGE 384
           PGE
Sbjct: 71  PGE 73



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>P42552:S1FA_SPIOL DNA-binding protein S1FA - Spinacia oleracea (Spinach)|
          Length = 70

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 20/62 (32%), Positives = 23/62 (37%)
 Frame = +1

Query: 199 KGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXXQGVSAP 378
           KGLNPG+I              GN+ LY YAQ                      QGV+ P
Sbjct: 9   KGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQGVAPP 68

Query: 379 GE 384
           GE
Sbjct: 69  GE 70



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>P42551:S1FA1_ARATH DNA-binding protein S1FA1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 76

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 20/62 (32%), Positives = 22/62 (35%)
 Frame = +1

Query: 199 KGLNPGMIXXXXXXXXXXXXXXGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXXQGVSAP 378
           KGLNPG+I               NY LY+YAQ                      QGV  P
Sbjct: 15  KGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVP 74

Query: 379 GE 384
           GE
Sbjct: 75  GE 76



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>Q96P88:GNRR2_HUMAN Gonadotropin-releasing hormone II receptor - Homo sapiens (Human)|
          Length = 379

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 404 LMSIALCWAPFYLIKKTYQLEPQRLFM*KPCLEWYIVGIGHL 529
           L++  LCW P+YL+   Y   P  L    P L   +  +G L
Sbjct: 270 LLTFILCWTPYYLLGMWYWFSPTMLTEVPPSLSHILFLLGLL 311


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 105,285,071
Number of extensions: 2085976
Number of successful extensions: 4776
Number of sequences better than 10.0: 8
Number of HSP's gapped: 4773
Number of HSP's successfully gapped: 8
Length of query: 218
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 109
Effective length of database: 70,788,284
Effective search space: 7715922956
Effective search space used: 7715922956
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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