ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf126l05 |
|---|---|
| Clone Library Name | barley_pub |
>Q8W234:SEUSS_ARATH Transcriptional corepressor SEUSS - Arabidopsis thaliana (Mouse-ear| cress) Length = 877 Score = 91.3 bits (225), Expect = 1e-17 Identities = 37/91 (40%), Positives = 58/91 (63%) Frame = +2 Query: 974 IQLAGPVRTPVESGLCSRRLMQYLYHKRYRPDNNPITYWRKLIDEYFAPRSRERWCVSSY 1153 + L P++ E G+ ++RL QY+Y +++RP++N I +WRK + EYFAP +++RWCVS Y Sbjct: 291 LPLRPPLKPVYEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMY 350 Query: 1154 EKSGNTSAAIPQTSPGTWRCDICNTHSGKGY 1246 T+ PQ W C+ICN G+G+ Sbjct: 351 GSGRQTTGVFPQ---DVWHCEICNRKPGRGF 378
>Q5PPJ2:RSRC1_RAT Arginine/serine-rich coiled coil protein 1 - Rattus norvegicus| (Rat) Length = 334 Score = 35.0 bits (79), Expect = 0.96 Identities = 24/90 (26%), Positives = 40/90 (44%) Frame = +1 Query: 4 RHRRPLTHAASHQKRRRRRNKNYVD**AE*KGGRKNNIRSTRPARREGGRVSSRTTAASS 183 R R+P +H S+++RRRRR+ + + G R+ RS R + RV + + + Sbjct: 53 RDRQPRSH--SYERRRRRRSSS-----SSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRT 105 Query: 184 PEEEQRPTTTDHARRARPRAHEFPGKISED 273 RP H+R + +H S D Sbjct: 106 RRSRSRPRPRSHSRSSERSSHRRTRSRSRD 135
>Q5HCP3:SRAP_STAAC Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain COL) Length = 2261 Score = 34.7 bits (78), Expect = 1.2 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +S+SG+ ++ L D M+GS+ VST+ S SI S+ V+D +S Sbjct: 1901 ESDSMSTSDSSSISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSVSDSSSTSTS 1960 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1961 TSLSDSMSQSQSTSTSA 1977
>Q2FUW1:SRAP_STAA8 Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain NCTC 8325) Length = 2271 Score = 34.7 bits (78), Expect = 1.2 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +S+SG+ ++ L D M+GS+ VST+ S SI S+ V+D +S Sbjct: 1911 ESDSMSTSDSSSISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSVSDSSSTSTS 1970 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1971 TSLSDSMSQSQSTSTSA 1987
>Q2FDK5:SRAP_STAA3 Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain USA300) Length = 2271 Score = 34.7 bits (78), Expect = 1.2 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +S+SG+ ++ L D M+GS+ VST+ S SI S+ V+D +S Sbjct: 1911 ESDSMSTSDSSSISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSVSDSSSTSTS 1970 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1971 TSLSDSMSQSQSTSTSA 1987
>Q4WYF1:HIR3_ASPFU Histone transcription regulator 3 homolog - Aspergillus fumigatus| (Sartorya fumigata) Length = 2019 Score = 33.9 bits (76), Expect = 2.1 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Frame = -2 Query: 1266 LSSNILPYP-----FPECVLQISQRHVPGDVCGI-AAEVFPDFSYDDT 1141 LSS+I YP F LQ S+ H+ DV I A E FP+FS +D+ Sbjct: 59 LSSDIFKYPESISDFKRSALQDSEAHLDDDVAVIDAVETFPEFSVNDS 106
>Q8NUJ3:SRAP_STAAW Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain MW2) Length = 2275 Score = 33.5 bits (75), Expect = 2.8 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +S+SG+ ++ L D M+GS+ VST+ S SI S+ ++D +S Sbjct: 1911 ESDSMSTSDSSSISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSLSDSSSTSTS 1970 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1971 TSLSDSMSQSQSTSTSA 1987
>Q6G620:SRAP_STAAS Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain MSSA476) Length = 2275 Score = 33.5 bits (75), Expect = 2.8 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +S+SG+ ++ L D M+GS+ VST+ S SI S+ ++D +S Sbjct: 1911 ESDSMSTSDSSSISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSLSDSSSTSTS 1970 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1971 TSLSDSMSQSQSTSTSA 1987
>Q7A362:SRAP_STAAN Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain N315) Length = 2271 Score = 33.5 bits (75), Expect = 2.8 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +++SG+ ++ L D M+GS+ VST+ S SI S+ V+D +S Sbjct: 1911 ESDSMSTSDSSNISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSVSDSSSTSTS 1970 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1971 TSLSDSMSQSQSTSTSA 1987
>Q99QY4:SRAP_STAAM Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain Mu50 / ATCC 700699) Length = 2271 Score = 33.5 bits (75), Expect = 2.8 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%) Frame = +2 Query: 320 QGDGSVST*LTSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS---- 484 + D ++ +++SG+ ++ L D M+GS+ VST+ S SI S+ V+D +S Sbjct: 1911 ESDSMSTSDSSNISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSTSVSDSSSTSTS 1970 Query: 485 -SLSGGAQFQQSTSMNA 532 SLS QSTS +A Sbjct: 1971 TSLSDSMSQSQSTSTSA 1987
>Q5R4B2:ARMX1_PONPY Armadillo repeat-containing X-linked protein 1 - Pongo pygmaeus| (Orangutan) Length = 453 Score = 33.5 bits (75), Expect = 2.8 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +1 Query: 97 GGRKNNIRSTRPARREGGRVSSRTTAASSPEEEQRPTTTDHARRARPRAHEFPGKISE 270 GGR TR R GGR S ++ + + + P TT RR + FP KI + Sbjct: 146 GGRGGGCHPTRSGSRAGGRASGKSKGKARSKSTRAPATTWPVRRGK---FNFPYKIDD 200
>Q9P291:ARMX1_HUMAN Armadillo repeat-containing X-linked protein 1 - Homo sapiens| (Human) Length = 453 Score = 33.5 bits (75), Expect = 2.8 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = +1 Query: 97 GGRKNNIRSTRPARREGGRVSSRTTAASSPEEEQRPTTTDHARRARPRAHEFPGKISE 270 GGR TR R GGR S ++ + + + P TT RR + FP KI + Sbjct: 146 GGRGGGCHPTRSGSRAGGRASGKSKGKARSKSTRAPATTWPVRRGK---FNFPYKIDD 200
>P21525:FOSL_DROME Transcription factor kayak - Drosophila melanogaster (Fruit fly)| Length = 722 Score = 33.1 bits (74), Expect = 3.6 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +1 Query: 100 GRKNNIRSTRPARREGGRVSSRTTAASSPEEEQRPTTTDHARRARPRAHE 249 G N S PARR GGR +R+T + EE++R + ++A R + Sbjct: 355 GSSNANTSNTPARRGGGRRPNRSTNMTPEEEQKRAVRRERNKQAAARCRK 404
>Q8VQ99:SRAP_STAAU Serine-rich adhesin for platelets precursor - Staphylococcus aureus| Length = 2283 Score = 32.7 bits (73), Expect = 4.7 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Frame = +2 Query: 350 TSMSGAPRSNLGLVPRD-MNGSLPVSTTNSSGPSIGVSSLVTDGNS-----SLSGGAQFQ 511 +S+SG+ ++ L D M+GS+ VST+ S SI S V+D +S SLS Sbjct: 1919 SSISGSNSTSTSLSTSDSMSGSVSVSTSTSLSDSISGSISVSDSSSTSTSESLSDSMAQS 1978 Query: 512 QSTSMNA 532 QSTS +A Sbjct: 1979 QSTSTSA 1985
>Q08965:BMS1_YEAST Ribosome biogenesis protein BMS1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 1183 Score = 32.3 bits (72), Expect = 6.2 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 11/102 (10%) Frame = +2 Query: 974 IQLAGPVRTPVESGLCSRRLMQYLYHKRYRPDNNPITY---WRKL--IDEYFAPRSRERW 1138 I + G + T ++ G+ RL ++ +HK+ N+P+ WR+ + Y SR R Sbjct: 810 IVMGGLLPTEIKFGIVKARLRRHRWHKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRT 869 Query: 1139 CVSSYEKSG---NTSAAIPQTSPGTWRCD---ICNTHSGKGY 1246 + Y N + P SP T C + N+ +G G+ Sbjct: 870 RMLKYTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGF 911 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 243,794,840 Number of extensions: 4795261 Number of successful extensions: 12180 Number of sequences better than 10.0: 15 Number of HSP's gapped: 12160 Number of HSP's successfully gapped: 15 Length of query: 563 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 445 Effective length of database: 68,319,629 Effective search space: 30402234905 Effective search space used: 30402234905 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
