ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf119d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001057105.1| Oryza sativa (japonica cultivar-group) Os03g0586600 (Os03g0586600) mRNA, complete cds Length = 988 Score = 452 bits (228), Expect = e-124 Identities = 372/420 (88%) Strand = Plus / Plus Query: 102 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatga 161 |||||||| |||||||||||||||||| ||||| || | |||||||||||||||||||| Sbjct: 89 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggtatgaggatga 148 Query: 162 gcctccagaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgc 221 ||| |||||| |||| ||||||||||||| |||||| || |||||||| || ||||||| Sbjct: 149 gccaccagaacctgagattgaggaaggggctgaagaggaacctgagaataacgaggatgg 208 Query: 222 ccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtcc 281 ||||||||| || ||||||| || | |||||| |||||||| ||||| ||| || || Sbjct: 209 ccctgatgaggttgtaggggcagaggctgaagataaggaacaagaaaaaactcagcgccc 268 Query: 282 acgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgc 341 |||||| || |||| ||||||||||| |||||||| || |||||||| || |||||||| Sbjct: 269 acgcaaaacgtcaaagtatatgacaaagtatgagcgtgcccgcatcctgggtacacgtgc 328 Query: 342 tttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctct 401 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 329 attacagataagcatgaatgctccagttatggttgagcttgagggagaaactgatcctct 388 Query: 402 tgagattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtactt 461 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 389 tgagattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtactt 448 Query: 462 acctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 521 |||||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 449 acctgacggaagctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 508 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 690 tggttgcatcagtttgcttggac 712 ||||||||||||||||||||||| Sbjct: 719 tggttgcatcagtttgcttggac 741
>dbj|AK070943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067P18, full insert sequence Length = 990 Score = 452 bits (228), Expect = e-124 Identities = 372/420 (88%) Strand = Plus / Plus Query: 102 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatga 161 |||||||| |||||||||||||||||| ||||| || | |||||||||||||||||||| Sbjct: 90 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggtatgaggatga 149 Query: 162 gcctccagaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgc 221 ||| |||||| |||| ||||||||||||| |||||| || |||||||| || ||||||| Sbjct: 150 gccaccagaacctgagattgaggaaggggctgaagaggaacctgagaataacgaggatgg 209 Query: 222 ccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtcc 281 ||||||||| || ||||||| || | |||||| |||||||| ||||| ||| || || Sbjct: 210 ccctgatgaggttgtaggggcagaggctgaagataaggaacaagaaaaaactcagcgccc 269 Query: 282 acgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgc 341 |||||| || |||| ||||||||||| |||||||| || |||||||| || |||||||| Sbjct: 270 acgcaaaacgtcaaagtatatgacaaagtatgagcgtgcccgcatcctgggtacacgtgc 329 Query: 342 tttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctct 401 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 330 attacagataagcatgaatgctccagttatggttgagcttgagggagaaactgatcctct 389 Query: 402 tgagattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtactt 461 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 390 tgagattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtactt 449 Query: 462 acctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 521 |||||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 450 acctgacggaagctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 509 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 690 tggttgcatcagtttgcttggac 712 ||||||||||||||||||||||| Sbjct: 720 tggttgcatcagtttgcttggac 742
>gb|AY104237.1| Zea mays PCO104743 mRNA sequence Length = 1061 Score = 414 bits (209), Expect = e-112 Identities = 362/413 (87%) Strand = Plus / Plus Query: 109 ggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctcca 168 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 99 ggagccatggcggacgacgattacaacgaaattgacatggggtatgaggatgagccccca 158 Query: 169 gaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgcccctgat 228 ||| | || ||||||||||| | ||||||||| ||||||||||| || |||||||||||| Sbjct: 159 gaaccggagattgaggaaggagctgaagaagagcctgagaacaacgaagatgcccctgat 218 Query: 229 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 288 || || |||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 219 gacgtcataggtggtgagggtgaagataaggaacaggaaaagaccaagcgtgaacgcaaa 278 Query: 289 acaacaaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcag 348 ||||||||||| ||||| || || || || || ||||| ||||| ||||| || |||||| Sbjct: 279 acaacaaaatacatgacgaagtacgaacgtgcgcgcattcttggtacacgagccttgcag 338 Query: 349 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 408 |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 339 ataagcatgaatgctccagtcatggttgagcttgagggagaaactgaccctcttgagatt 398 Query: 409 gccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 468 || ||||| || || ||||| |||||||| ||||||||||| || |||||| |||||||| Sbjct: 399 gcgatgaaggagcttagagcgcgcaagatacccttcacgatcagacggtacctacctgat 458 Query: 469 ggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 521 ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 459 ggaagttatgaagactggggagtagacgagctcattgtggaggactcctggaa 511
>emb|CT832415.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI230L08, full insert sequence Length = 2052 Score = 406 bits (205), Expect = e-110 Identities = 331/373 (88%) Strand = Plus / Plus Query: 149 ggtatgaggatgagcctccagaagctgatattgaggaaggggttgaagaagatcctgaga 208 |||||||||||||||| |||||| |||| ||||||||||||| |||||| || ||||||| Sbjct: 1436 ggtatgaggatgagccaccagaacctgagattgaggaaggggctgaagaggaacctgaga 1495 Query: 209 acaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaaa 268 | || ||||||| ||||||||| || ||||||| || | |||||| |||||||| |||| Sbjct: 1496 ataacgaggatggccctgatgaggttgtaggggcagaggctgaagataaggaacaagaaa 1555 Query: 269 agactgcccgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatcc 328 | ||| || |||||||| || |||| ||||||||||| |||||||| || ||||||| Sbjct: 1556 aaactcagcgcccacgcaaaacgtcaaagtatatgacaaagtatgagcgtgcccgcatcc 1615 Query: 329 ttggcacacgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtg 388 | || |||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1616 tgggtacacgtgcattacagataagcatgaatgctccagttatggttgagcttgagggag 1675 Query: 389 aaactgatcctcttgagattgccatgaaagaactgagagcacgcaagatccccttcacga 448 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct: 1676 aaactgatcctcttgagattgccatgaaagagctgagagcacgcaagatcccattcacaa 1735 Query: 449 ttaggcggtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtgg 508 ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||| Sbjct: 1736 ttaggcggtacttacctgacggaagctatgaggactggggcgttgacgagcttattgtgg 1795 Query: 509 aggactcgtggaa 521 ||||||| ||||| Sbjct: 1796 aggactcctggaa 1808 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 102 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 151 |||||||| |||||||||||||||||| ||||| || | |||||||||| Sbjct: 81 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 130
>emb|CT833854.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA035N11, full insert sequence Length = 776 Score = 385 bits (194), Expect = e-103 Identities = 372/430 (86%), Gaps = 6/430 (1%) Strand = Plus / Plus Query: 112 gccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaa 171 ||||||||||| ||||| ||||| || | ||||||||||| ||||||||||| |||||| Sbjct: 116 gccatggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaa 175 Query: 172 gctgatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgat 228 |||| ||||||||||| | ||| ||||| |||||||| |||||||||||| ||| Sbjct: 176 cctgagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggat 235 Query: 229 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 288 |||||||| |||| ||||| ||| ||||| ||||||||||| || |||||||| || Sbjct: 236 gatgtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaa 292 Query: 289 acaacaaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcag 348 ||| |||| |||||||||||||| ||||| |||||||| ||||| |||||||| |||||| Sbjct: 293 acatcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcag 352 Query: 349 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 408 ||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||||| Sbjct: 353 ataagcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagatt 412 Query: 409 gccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 468 |||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||| Sbjct: 413 gccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgat 472 Query: 469 ggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaa 528 ||||||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct: 473 ggaagctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaa 532 Query: 529 gttggcgggg 538 ||||| |||| Sbjct: 533 gttggtgggg 542
>ref|NM_001066117.1| Oryza sativa (japonica cultivar-group) Os07g0463100 (Os07g0463100) mRNA, complete cds Length = 757 Score = 385 bits (194), Expect = e-103 Identities = 372/430 (86%), Gaps = 6/430 (1%) Strand = Plus / Plus Query: 112 gccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaa 171 ||||||||||| ||||| ||||| || | ||||||||||| ||||||||||| |||||| Sbjct: 112 gccatggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaa 171 Query: 172 gctgatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgat 228 |||| ||||||||||| | ||| ||||| |||||||| |||||||||||| ||| Sbjct: 172 cctgagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggat 231 Query: 229 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 288 |||||||| |||| ||||| ||| ||||| ||||||||||| || |||||||| || Sbjct: 232 gatgtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaa 288 Query: 289 acaacaaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcag 348 ||| |||| |||||||||||||| ||||| |||||||| ||||| |||||||| |||||| Sbjct: 289 acatcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcag 348 Query: 349 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 408 ||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||||| Sbjct: 349 ataagcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagatt 408 Query: 409 gccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 468 |||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||| Sbjct: 409 gccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgat 468 Query: 469 ggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaa 528 ||||||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct: 469 ggaagctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaa 528 Query: 529 gttggcgggg 538 ||||| |||| Sbjct: 529 gttggtgggg 538
>dbj|AK121807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097N04, full insert sequence Length = 758 Score = 385 bits (194), Expect = e-103 Identities = 372/430 (86%), Gaps = 6/430 (1%) Strand = Plus / Plus Query: 112 gccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaa 171 ||||||||||| ||||| ||||| || | ||||||||||| ||||||||||| |||||| Sbjct: 113 gccatggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaa 172 Query: 172 gctgatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgat 228 |||| ||||||||||| | ||| ||||| |||||||| |||||||||||| ||| Sbjct: 173 cctgagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggat 232 Query: 229 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 288 |||||||| |||| ||||| ||| ||||| ||||||||||| || |||||||| || Sbjct: 233 gatgtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaa 289 Query: 289 acaacaaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcag 348 ||| |||| |||||||||||||| ||||| |||||||| ||||| |||||||| |||||| Sbjct: 290 acatcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcag 349 Query: 349 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 408 ||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||||| Sbjct: 350 ataagcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagatt 409 Query: 409 gccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 468 |||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||| Sbjct: 410 gccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgat 469 Query: 469 ggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaa 528 ||||||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct: 470 ggaagctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaa 529 Query: 529 gttggcgggg 538 ||||| |||| Sbjct: 530 gttggtgggg 539
>ref|NM_124573.1| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase (AT5G51940) mRNA, complete cds Length = 662 Score = 131 bits (66), Expect = 4e-27 Identities = 212/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 277 cgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcaca 336 ||||||||||| || |||| | |||||| || |||||||| || || ||||| ||||| Sbjct: 261 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 320 Query: 337 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 396 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 321 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 380 Query: 397 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 455 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 381 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 439 Query: 456 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 515 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 440 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 499 Query: 516 gtggaagcgtcaagttgg 533 ||||| ||||||||||| Sbjct: 500 atggaaacgtcaagttgg 517
>gb|AY063088.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II subunit (At5g51940) mRNA, complete cds Length = 466 Score = 131 bits (66), Expect = 4e-27 Identities = 212/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 277 cgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcaca 336 ||||||||||| || |||| | |||||| || |||||||| || || ||||| ||||| Sbjct: 169 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 228 Query: 337 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 396 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 229 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 288 Query: 397 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 455 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 289 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 347 Query: 456 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 515 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 348 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 407 Query: 516 gtggaagcgtcaagttgg 533 ||||| ||||||||||| Sbjct: 408 atggaaacgtcaagttgg 425
>gb|AF370301.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II subunit (At5g51940) mRNA, complete cds Length = 650 Score = 131 bits (66), Expect = 4e-27 Identities = 212/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 277 cgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcaca 336 ||||||||||| || |||| | |||||| || |||||||| || || ||||| ||||| Sbjct: 256 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 315 Query: 337 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 396 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 316 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 375 Query: 397 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 455 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 376 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 434 Query: 456 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 515 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 435 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 494 Query: 516 gtggaagcgtcaagttgg 533 ||||| ||||||||||| Sbjct: 495 atggaaacgtcaagttgg 512
>gb|AY088602.1| Arabidopsis thaliana clone 8268 mRNA, complete sequence Length = 663 Score = 131 bits (66), Expect = 4e-27 Identities = 212/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 277 cgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcaca 336 ||||||||||| || |||| | |||||| || |||||||| || || ||||| ||||| Sbjct: 262 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 321 Query: 337 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 396 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 322 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 381 Query: 397 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 455 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 382 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 440 Query: 456 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 515 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 441 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 500 Query: 516 gtggaagcgtcaagttgg 533 ||||| ||||||||||| Sbjct: 501 atggaaacgtcaagttgg 518
>dbj|AK229481.1| Arabidopsis thaliana mRNA for putative DNA-directed RNA polymerase II subunit, complete cds, clone: RAFL16-90-O11 Length = 742 Score = 127 bits (64), Expect = 6e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 300 tatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 257 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 316 Query: 360 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaaga 419 |||||| |||||||||||| | |||||||| |||||||| ||||||||||| |||||||| Sbjct: 317 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 376 Score = 46.1 bits (23), Expect = 0.19 Identities = 46/53 (86%), Gaps = 3/53 (5%) Strand = Plus / Plus Query: 115 atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 164 ||||| |||||||||||||||||||| |||| |||| ||||| |||||||| Sbjct: 66 atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 118
>ref|NM_126492.2| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase (AT2G04630) mRNA, complete cds Length = 732 Score = 127 bits (64), Expect = 6e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 300 tatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 257 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 316 Query: 360 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaaga 419 |||||| |||||||||||| | |||||||| |||||||| ||||||||||| |||||||| Sbjct: 317 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 376 Score = 46.1 bits (23), Expect = 0.19 Identities = 46/53 (86%), Gaps = 3/53 (5%) Strand = Plus / Plus Query: 115 atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 164 ||||| |||||||||||||||||||| |||| |||| ||||| |||||||| Sbjct: 66 atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 118
>gb|BT010184.1| Arabidopsis thaliana At2g04630 gene, complete cds Length = 435 Score = 127 bits (64), Expect = 6e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 300 tatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 192 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 251 Query: 360 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaaga 419 |||||| |||||||||||| | |||||||| |||||||| ||||||||||| |||||||| Sbjct: 252 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 311 Score = 46.1 bits (23), Expect = 0.19 Identities = 46/53 (86%), Gaps = 3/53 (5%) Strand = Plus / Plus Query: 115 atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 164 ||||| |||||||||||||||||||| |||| |||| ||||| |||||||| Sbjct: 1 atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 53
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 107 bits (54), Expect = 6e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 404 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 463 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 138783 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 138724 Query: 464 ctgatggaag 473 |||| ||||| Sbjct: 138723 ctgacggaag 138714 Score = 103 bits (52), Expect = 9e-19 Identities = 142/172 (82%) Strand = Plus / Minus Query: 182 aggaaggggttgaagaagatcctgagaacaatgaggatgcccctgatgatgtggtagggg 241 ||||||||| |||||| || |||||||| || ||||||| ||||||||| || ||||||| Sbjct: 140458 aggaaggggctgaagaggaacctgagaataacgaggatggccctgatgaggttgtagggg 140399 Query: 242 gtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaatacaacaaaatata 301 || | |||||| |||||||| ||||| ||| || |||||||| || |||| |||| Sbjct: 140398 cagaggctgaagataaggaacaagaaaaaactcagcgcccacgcaaaacgtcaaagtata 140339 Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 353 ||||||| |||||||| || |||||||| || |||||||| || |||||||| Sbjct: 140338 tgacaaagtatgagcgtgcccgcatcctgggtacacgtgcattacagataag 140287 Score = 99.6 bits (50), Expect = 1e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 140195 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 140142 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 472 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 521 ||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 138634 agctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 138585 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 102 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 151 |||||||| |||||||||||||||||| ||||| || | |||||||||| Sbjct: 141920 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 141871 Score = 48.1 bits (24), Expect = 0.047 Identities = 33/36 (91%) Strand = Plus / Minus Query: 149 ggtatgaggatgagcctccagaagctgatattgagg 184 |||||||||||||||| |||||| |||| ||||||| Sbjct: 140568 ggtatgaggatgagccaccagaacctgagattgagg 140533 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 690 tggttgcatcagtttgcttggac 712 ||||||||||||||||||||||| Sbjct: 138374 tggttgcatcagtttgcttggac 138352
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 107 bits (54), Expect = 6e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 404 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 463 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 21438901 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 21438842 Query: 464 ctgatggaag 473 |||| ||||| Sbjct: 21438841 ctgacggaag 21438832 Score = 103 bits (52), Expect = 9e-19 Identities = 142/172 (82%) Strand = Plus / Minus Query: 182 aggaaggggttgaagaagatcctgagaacaatgaggatgcccctgatgatgtggtagggg 241 ||||||||| |||||| || |||||||| || ||||||| ||||||||| || ||||||| Sbjct: 21440576 aggaaggggctgaagaggaacctgagaataacgaggatggccctgatgaggttgtagggg 21440517 Query: 242 gtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaatacaacaaaatata 301 || | |||||| |||||||| ||||| ||| || |||||||| || |||| |||| Sbjct: 21440516 cagaggctgaagataaggaacaagaaaaaactcagcgcccacgcaaaacgtcaaagtata 21440457 Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 353 ||||||| |||||||| || |||||||| || |||||||| || |||||||| Sbjct: 21440456 tgacaaagtatgagcgtgcccgcatcctgggtacacgtgcattacagataag 21440405 Score = 99.6 bits (50), Expect = 1e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 21440313 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 21440260 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 472 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 521 ||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 21438752 agctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 21438703 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 102 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 151 |||||||| |||||||||||||||||| ||||| || | |||||||||| Sbjct: 21442038 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 21441989 Score = 48.1 bits (24), Expect = 0.047 Identities = 33/36 (91%) Strand = Plus / Minus Query: 149 ggtatgaggatgagcctccagaagctgatattgagg 184 |||||||||||||||| |||||| |||| ||||||| Sbjct: 21440686 ggtatgaggatgagccaccagaacctgagattgagg 21440651 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 690 tggttgcatcagtttgcttggac 712 ||||||||||||||||||||||| Sbjct: 21438492 tggttgcatcagtttgcttggac 21438470
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 103 bits (52), Expect = 9e-19 Identities = 123/146 (84%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 208 aacaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaa 267 |||||||||||||| ||||||||||| |||| ||||| ||| ||||| |||||| Sbjct: 16238499 aacaatgaggatgctgtggatgatgtggttggggctgaagatgac---aaggagcaggaa 16238443 Query: 268 aagactgcccgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatc 327 ||||| || |||||||| || ||| |||| |||||||||||||| ||||| |||||||| Sbjct: 16238442 aagacggctcgtccacggaaaacatcaaagtatatgacaaaatacgagcgtgcacgcatt 16238383 Query: 328 cttggcacacgtgctttgcagataag 353 ||||| |||||||| ||||||||||| Sbjct: 16238382 cttggtacacgtgccttgcagataag 16238357 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 404 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 463 ||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 16236891 agattgccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttac 16236832 Query: 464 ctgatggaag 473 |||||||||| Sbjct: 16236831 ctgatggaag 16236822 Score = 77.8 bits (39), Expect = 5e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 472 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaagtt 531 |||||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 16236730 agctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaagtt 16236671 Query: 532 ggcgggg 538 || |||| Sbjct: 16236670 ggtgggg 16236664 Score = 63.9 bits (32), Expect = 8e-07 Identities = 51/56 (91%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 298 tatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 353 |||||||||||||| ||||| |||||||||||||| |||| ||| ||||||||||| Sbjct: 16222537 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagataag 16222483 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 |||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 16238265 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgag 16238212 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 16221988 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 16221935 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 16222400 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 16222347
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 103 bits (52), Expect = 9e-19 Identities = 123/146 (84%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 208 aacaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaa 267 |||||||||||||| ||||||||||| |||| ||||| ||| ||||| |||||| Sbjct: 58937 aacaatgaggatgctgtggatgatgtggttggggctgaagatgac---aaggagcaggaa 58881 Query: 268 aagactgcccgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatc 327 ||||| || |||||||| || ||| |||| |||||||||||||| ||||| |||||||| Sbjct: 58880 aagacggctcgtccacggaaaacatcaaagtatatgacaaaatacgagcgtgcacgcatt 58821 Query: 328 cttggcacacgtgctttgcagataag 353 ||||| |||||||| ||||||||||| Sbjct: 58820 cttggtacacgtgccttgcagataag 58795 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 404 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 463 ||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 57329 agattgccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttac 57270 Query: 464 ctgatggaag 473 |||||||||| Sbjct: 57269 ctgatggaag 57260 Score = 77.8 bits (39), Expect = 5e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 472 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaagtt 531 |||||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 57168 agctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaagtt 57109 Query: 532 ggcgggg 538 || |||| Sbjct: 57108 ggtgggg 57102 Score = 63.9 bits (32), Expect = 8e-07 Identities = 51/56 (91%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 298 tatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 353 |||||||||||||| ||||| |||||||||||||| |||| ||| ||||||||||| Sbjct: 42975 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagataag 42921 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 |||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 58703 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgag 58650 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 42426 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 42373 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 42838 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 42785
>gb|AF153278.1|AF153278 Nicotiana tabacum DNA-directed RNA polymerase IIb (NT193) mRNA, complete cds Length = 830 Score = 97.6 bits (49), Expect = 6e-17 Identities = 160/197 (81%) Strand = Plus / Plus Query: 298 tatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 357 ||||||||||||||||| || || | ||||| ||||| ||||| | ||||| |||||| Sbjct: 263 tatatgacaaaatatgaacgtgctagaatcctgggcactcgtgcactccagatcagcatg 322 Query: 358 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaa 417 |||||||| || ||||||||| | ||||| ||||||||||| ||||||||||| ||||| Sbjct: 323 aatgctcctgtgatggttgagttggagggggaaactgatccacttgagattgcaatgaag 382 Query: 418 gaactgagagcacgcaagatccccttcacgattaggcggtacttacctgatggaagctat 477 || || ||| | ||||| || ||||| ||| | || ||| | ||||||||||| ||| Sbjct: 383 gagctccgagagagaaagataccattcacaattcgccgttacctgcctgatggaagttat 442 Query: 478 gaggactggggagtcga 494 || || ||||||||||| Sbjct: 443 gaagattggggagtcga 459
>gb|AF153277.1|AF153277 Nicotiana tabacum DNA-directed RNA polymerase IIa mRNA, complete cds Length = 810 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Plus Query: 298 tatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 357 ||||||||||||||||| || || | ||||| ||||| ||||| | ||||| |||||| Sbjct: 263 tatatgacaaaatatgaacgtgctagaatcctgggcactcgtgcactccagatcagcatg 322 Query: 358 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaa 416 |||||||| || ||||||||| | ||||| ||||||||||| || |||||||| ||||| Sbjct: 323 aatgctcctgtgatggttgagttggagggggaaactgatccactcgagattgcaatgaa 381
>gb|BT014606.1| Lycopersicon esculentum clone 134086R, mRNA sequence Length = 652 Score = 79.8 bits (40), Expect = 1e-11 Identities = 154/192 (80%) Strand = Plus / Plus Query: 300 tatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 ||||||||||||||| || || | ||||| || || ||||| | ||||| |||||||| Sbjct: 269 tatgacaaaatatgaacgtgcgagaatcctgggaactcgtgcactccagatcagcatgaa 328 Query: 360 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaaga 419 ||| || || ||||||||||| || || |||||||| || ||||||||||| |||||||| Sbjct: 329 tgcacctgtgatggttgagctggaaggagaaactgacccacttgagattgcaatgaaaga 388 Query: 420 actgagagcacgcaagatccccttcacgattaggcggtacttacctgatggaagctatga 479 || ||| | ||||| || ||||| ||| | || ||||| ||||||||||| ||||| Sbjct: 389 gctccgagagaggaagataccattcacaattcgccgttacttgcctgatggaagttatga 448 Query: 480 ggactggggagt 491 || |||||||| Sbjct: 449 agattggggagt 460
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 73.8 bits (37), Expect = 8e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 293 caaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 352 |||| |||||||||||||| ||||| |||||||||||| | |||||||| |||||||||| Sbjct: 20463019 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 20463078 Query: 353 g 353 | Sbjct: 20463079 g 20463079 Score = 48.1 bits (24), Expect = 0.047 Identities = 30/32 (93%) Strand = Plus / Plus Query: 352 agcatgaatgctccagttatggttgagcttga 383 |||||||||||||| |||||||| |||||||| Sbjct: 20463171 agcatgaatgctcctgttatggtcgagcttga 20463202
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 73.8 bits (37), Expect = 8e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 293 caaaatatatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 352 |||| |||||||||||||| ||||| |||||||||||| | |||||||| |||||||||| Sbjct: 93649 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 93708 Query: 353 g 353 | Sbjct: 93709 g 93709 Score = 48.1 bits (24), Expect = 0.047 Identities = 30/32 (93%) Strand = Plus / Plus Query: 352 agcatgaatgctccagttatggttgagcttga 383 |||||||||||||| |||||||| |||||||| Sbjct: 93801 agcatgaatgctcctgttatggtcgagcttga 93832
>gb|DQ455231.1| Medicago truncatula cDNA-AFLP fragment BC43M13_162 sequence Length = 285 Score = 67.9 bits (34), Expect = 5e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 457 tacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactcg 516 ||||| ||||||||||||||||| || |||||||| || ||||| |||||||| ||||| Sbjct: 27 tacttgcctgatggaagctatgaagattggggagttgatgagctgattgtggaagactcc 86 Query: 517 tggaag 522 |||||| Sbjct: 87 tggaag 92
>ref|XM_807301.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507485.15) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_807299.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507485.34) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_802954.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507159.65) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_802952.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507159.44) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_802949.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507159.90) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_801182.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507673.65) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_798051.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053506199.5) partial mRNA Length = 435 Score = 67.9 bits (34), Expect = 5e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 359 |||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence Length = 116217 Score = 67.9 bits (34), Expect = 5e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 |||||||||||||| |||||||||||| | |||||||| |||||||| |||||| Sbjct: 109669 agcatgaatgctcctgttatggttgagttggagggtgagactgatccacttgag 109722 Score = 46.1 bits (23), Expect = 0.19 Identities = 44/51 (86%) Strand = Plus / Plus Query: 300 tatgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 350 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| Sbjct: 109531 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagat 109581 Score = 44.1 bits (22), Expect = 0.73 Identities = 25/26 (96%) Strand = Plus / Plus Query: 115 atggcggacgacgattacaatgaagt 140 ||||| |||||||||||||||||||| Sbjct: 108973 atggctgacgacgattacaatgaagt 108998
>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15 Length = 81347 Score = 67.9 bits (34), Expect = 5e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 352 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 405 |||||||||||||| || ||||||||||| |||||||| |||||||| |||||| Sbjct: 6912 agcatgaatgctcctgtcatggttgagctagagggtgagactgatccacttgag 6965 Score = 44.1 bits (22), Expect = 0.73 Identities = 61/74 (82%) Strand = Plus / Plus Query: 277 cgtccacgcaatacaacaaaatatatgacaaaatatgagcgggcacgcatccttggcaca 336 ||||||||||| || |||| | |||||| || |||||||| || || ||||| ||||| Sbjct: 6749 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 6808 Query: 337 cgtgctttgcagat 350 || ||||||||||| Sbjct: 6809 cgcgctttgcagat 6822
>ref|XM_839408.1| Trypanosoma brucei TREU927 DNA-directed RNA polymerase subunit, putative (Tb927_4.3510) mRNA, complete cds Length = 435 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247 Query: 362 ctcc 365 |||| Sbjct: 248 ctcc 251
>ref|XM_839406.1| Trypanosoma brucei TREU927 DNA-directed RNA polymerase subunit, putative (Tb927_4.3490) mRNA, complete cds Length = 435 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247 Query: 362 ctcc 365 |||| Sbjct: 248 ctcc 251
>emb|AM167553.1| Trypanosoma brucei brucei mRNA for RNA polymerase subunit 2RPB6 (2RPB6 gene), strain 427 Length = 596 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 265 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 324 Query: 362 ctcc 365 |||| Sbjct: 325 ctcc 328
>gb|AC023489.8| Trypanosoma brucei chromosome 4 clone RPCI93-26G5, complete sequence Length = 79024 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 27602 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 27543 Query: 362 ctcc 365 |||| Sbjct: 27542 ctcc 27539 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 29577 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 29518 Query: 362 ctcc 365 |||| Sbjct: 29517 ctcc 29514
>ref|XM_820269.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DNA-directed RNA polymerase subunit (Tb927.4.3490) partial mRNA Length = 435 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247 Query: 362 ctcc 365 |||| Sbjct: 248 ctcc 251
>ref|XM_820271.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DNA-directed RNA polymerase subunit (Tb927.4.3510) partial mRNA Length = 435 Score = 63.9 bits (32), Expect = 8e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 302 tgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 361 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247 Query: 362 ctcc 365 |||| Sbjct: 248 ctcc 251
>gb|DQ215323.1| Taeniopygia guttata clone 0058P0006G06 DNA directed RNA polymerase II polypeptide F variant 2-like mRNA, complete sequence Length = 543 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 406 attgccatgaaagaactgagagcacgcaagatcccc 441 ||||||||||||||||| | |||||||||||||||| Sbjct: 283 attgccatgaaagaactcaaagcacgcaagatcccc 318
>gb|DQ215322.1| Taeniopygia guttata clone 0058P0019A05 DNA directed RNA polymerase II polypeptide F variant 1-like mRNA, complete sequence Length = 553 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 406 attgccatgaaagaactgagagcacgcaagatcccc 441 ||||||||||||||||| | |||||||||||||||| Sbjct: 284 attgccatgaaagaactcaaagcacgcaagatcccc 319
>ref|XM_386859.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06683.1) partial mRNA Length = 420 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 325 atccttggcacacgtgctttgcagataagcatgaatgc 362 ||||| |||||||| ||||||||||| ||||||||||| Sbjct: 271 atcctcggcacacgcgctttgcagattagcatgaatgc 308
>ref|NM_204734.1| Gallus gallus polymerase (RNA) II (DNA directed) polypeptide F (POLR2F), mRNA emb|AJ251211.1|GGA251211 Gallus gallus mRNA for RNA polymerase common subunit RPB6 (RPB6 gene) Length = 543 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 405 gattgccatgaaagaactgagagcacgcaagat 437 |||||||||||||||||| | |||||||||||| Sbjct: 291 gattgccatgaaagaactcaaagcacgcaagat 323
>gb|AY391257.1| Tetrahymena bergeri heat shock protein 90 gene, partial cds Length = 1683 Score = 48.1 bits (24), Expect = 0.047 Identities = 30/32 (93%) Strand = Plus / Plus Query: 243 tgaaggtgaagaaaaggaacaggaaaagactg 274 ||||| ||||||||||||| |||||||||||| Sbjct: 591 tgaagatgaagaaaaggaaaaggaaaagactg 622
>ref|XM_416631.2| PREDICTED: Gallus gallus similar to MGC53544 protein (LOC418417), mRNA Length = 1400 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 102 ggcggcgggagccatggcggacg 124 ||||||||||||||||||||||| Sbjct: 114 ggcggcgggagccatggcggacg 136
>gb|AC161020.2| Pan troglodytes BAC clone CH251-19C5 from chromosome 7, complete sequence Length = 200756 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 atacaacaaaatatatgacaaaa 309 ||||||||||||||||||||||| Sbjct: 144421 atacaacaaaatatatgacaaaa 144443
>gb|AC149232.2| Pan troglodytes BAC clone CH251-38H5 from 7, complete sequence Length = 184062 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 atacaacaaaatatatgacaaaa 309 ||||||||||||||||||||||| Sbjct: 98895 atacaacaaaatatatgacaaaa 98917
>ref|XM_706933.1| Candida albicans SC5314 putative subunit common to RNA polymerase I, II and III (CaO19.2643), mRNA Length = 474 Score = 46.1 bits (23), Expect = 0.19 Identities = 38/43 (88%) Strand = Plus / Plus Query: 356 tgaatgctccagttatggttgagcttgagggtgaaactgatcc 398 ||||||||||||| ||||||| |||| |||||||||||||| Sbjct: 314 tgaatgctccagtattggttgatattgaaggtgaaactgatcc 356
>ref|XM_706954.1| Candida albicans SC5314 RNA polymerase I, II and III subunit (CaO19.10166), mRNA Length = 474 Score = 46.1 bits (23), Expect = 0.19 Identities = 38/43 (88%) Strand = Plus / Plus Query: 356 tgaatgctccagttatggttgagcttgagggtgaaactgatcc 398 ||||||||||||| ||||||| |||| |||||||||||||| Sbjct: 314 tgaatgctccagtattggttgatattgaaggtgaaactgatcc 356
>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence Length = 181948 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Minus Query: 286 aatacaacaaaatatatgacaaaatat 312 ||||||||||||||||| ||||||||| Sbjct: 132759 aatacaacaaaatatataacaaaatat 132733
>gb|AC092447.5| Homo sapiens BAC clone RP11-760D2 from 7, complete sequence Length = 176547 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 atacaacaaaatatatgacaaaa 309 ||||||||||||||||||||||| Sbjct: 135902 atacaacaaaatatatgacaaaa 135924
>ref|XM_393973.2| PREDICTED: Apis mellifera similar to RNA polymerase II 18kD subunit CG1163-PA (LOC410494), mRNA Length = 393 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Plus Query: 288 tacaacaaaatatatgacaaaatatga 314 |||||||| |||||||||||||||||| Sbjct: 162 tacaacaagatatatgacaaaatatga 188
>emb|BX248403.6| Zebrafish DNA sequence from clone DKEY-30H14 in linkage group 20, complete sequence Length = 154669 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Plus Query: 286 aatacaacaaaatatatgacaaaatat 312 ||||||||||||||||||| ||||||| Sbjct: 122670 aatacaacaaaatatatgataaaatat 122696
>gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromosome 7, complete sequence Length = 191966 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 atacaacaaaatatatgacaaaa 309 ||||||||||||||||||||||| Sbjct: 156194 atacaacaaaatatatgacaaaa 156216
>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22, complete sequence Length = 191642 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Minus Query: 286 aatacaacaaaatatatgacaaaatat 312 ||||||||||||||||| ||||||||| Sbjct: 132697 aatacaacaaaatatataacaaaatat 132671
>ref|XM_515126.2| PREDICTED: Pan troglodytes similar to RNA polymerase II, transcript variant 2 (LOC458824), mRNA Length = 2109 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 459 gatgggagctatgaagactggggggtggacgagctcat 496
>emb|CU013434.1| Homo sapiens POLR2F, mRNA (cDNA clone IMAGE:100000403), complete cds, without stop codon, in Gateway system Length = 415 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 353 gatgggagctatgaagactggggggtggacgagctcat 390
>emb|CU013146.1| Homo sapiens POLR2F, mRNA (cDNA clone IMAGE:100000499), complete cds, with stop codon, in Gateway system Length = 418 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 353 gatgggagctatgaagactggggggtggacgagctcat 390
>ref|XM_001090989.1| PREDICTED: Macaca mulatta similar to DNA directed RNA polymerase II polypeptide F (LOC699566), mRNA Length = 2070 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 435 gatgggagctatgaagactggggggtggacgagctcat 472
>gb|BC003582.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide F, mRNA (cDNA clone MGC:2669 IMAGE:3546712), complete cds Length = 588 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 437 gatgggagctatgaagactggggggtggacgagctcat 474
>ref|NM_031335.2| Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide F (Polr2f), mRNA gb|BC083552.1| Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide F, mRNA (cDNA clone MGC:93368 IMAGE:7190444), complete cds Length = 1895 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||||||||||||||| ||||| || || |||||||| Sbjct: 419 gatggaagctatgaggattggggcgtggatgagctcat 456
>emb|AL031587.3|HS1039K5 Human DNA sequence from clone RP5-1039K5 on chromosome 22q12.3-13.2, complete sequence Length = 142723 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 24943 gatgggagctatgaagactggggggtggacgagctcat 24980
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 44.1 bits (22), Expect = 0.73 Identities = 43/50 (86%) Strand = Plus / Minus Query: 301 atgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 350 ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||| Sbjct: 116573 atgacgaaatatgagcgcgcacgaatcctcggcacgcgtgcgctgcagat 116524
>gb|AF006501.4| Homo sapiens chromosome 22q13.1 Cosmid Clone c1155, complete sequence Length = 40129 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 20996 gatgggagctatgaagactggggggtggacgagctcat 21033
>emb|CR456546.1| Homo sapiens POLR2F full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.POLR2F) Length = 406 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 349 gatgggagctatgaagactggggggtggacgagctcat 386
>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4 Length = 313050 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Plus Query: 292 acaaaatatatgacaaaatatg 313 |||||||||||||||||||||| Sbjct: 20884 acaaaatatatgacaaaatatg 20905 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 acaaaatatatgacaaaatat 312 ||||||||||||||||||||| Sbjct: 20716 acaaaatatatgacaaaatat 20736
>emb|CR860972.1| Pongo pygmaeus mRNA; cDNA DKFZp459P0527 (from clone DKFZp459P0527) Length = 2099 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 428 gatgggagctatgaagactggggggtggacgagctcat 465
>emb|CR608980.1| full-length cDNA clone CS0DD005YG11 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1445 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 410 gatgggagctatgaagactggggggtggacgagctcat 447
>emb|CR457021.1| Homo sapiens full open reading frame cDNA clone RZPDo834H115D for gene POLR2F, polymerase (RNA) II (DNA directed) polypeptide F; complete cds, incl. stopcodon Length = 384 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 334 gatgggagctatgaagactggggggtggacgagctcat 371
>ref|NM_209934.1| Eremothecium gossypii AEL279Cp (AEL279C), mRNA Length = 465 Score = 44.1 bits (22), Expect = 0.73 Identities = 43/50 (86%) Strand = Plus / Plus Query: 301 atgacaaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 350 ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||| Sbjct: 250 atgacgaaatatgagcgcgcacgaatcctcggcacgcgtgcgctgcagat 299
>ref|NM_021974.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide F (POLR2F), mRNA emb|Z27113.1|HSRNAP14K H.Sapiens gene for RNA polymerase II subunit 14.4 kD Length = 546 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 412 gatgggagctatgaagactggggggtggacgagctcat 449
>dbj|AB017711.1| Rattus norvegicus mRNA for RNA polymerase II, complete cds Length = 470 Score = 44.1 bits (22), Expect = 0.73 Identities = 34/38 (89%) Strand = Plus / Plus Query: 466 gatggaagctatgaggactggggagtcgacgagctcat 503 ||||||||||||||||| ||||| || || |||||||| Sbjct: 379 gatggaagctatgaggattggggcgtggatgagctcat 416
>ref|XM_001229703.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_03188) mRNA, complete cds Length = 879 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 accaacccgaatcccaacccc 54 ||||||||||||||||||||| Sbjct: 173 accaacccgaatcccaacccc 193
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 11516782 tacaacaaaatatattacaaaatat 11516806
>ref|NW_001091929.1| Theileria annulata strain Ankara clone C9 Length = 2592520 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 286 aatacaacaaaatatatgacaaaatatga 314 |||||||| |||||||| ||||||||||| Sbjct: 1678549 aatacaactaaatatattacaaaatatga 1678577
>gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22, complete sequence Length = 136150 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 aacaaaatatatgacaaaatatgag 315 |||||||||||||||||||| |||| Sbjct: 104141 aacaaaatatatgacaaaatttgag 104117
>gb|AY441223.1| Armigeres subalbatus ASAP ID: 41897 RNA polymerase II 18kd subunit mRNA sequence Length = 608 Score = 42.1 bits (21), Expect = 2.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 368 ttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaa 416 |||||||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct: 375 ttatggttgaactggagggcgaaacggaccctctccagattgccatgaa 423
>ref|NM_181086.2| Rattus norvegicus tumor necrosis factor receptor superfamily, member 12a (Tnfrsf12a), mRNA gb|BC060537.1| Rattus norvegicus tumor necrosis factor receptor superfamily, member 12a, mRNA (cDNA clone MGC:72653 IMAGE:6887545), complete cds Length = 997 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 aacaccaacccgaatcccaac 51 ||||||||||||||||||||| Sbjct: 95 aacaccaacccgaatcccaac 75
>ref|NM_168462.1| Drosophila melanogaster Mob1 CG11711-RB, transcript variant B (Mob1), mRNA Length = 3458 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 2533 tacaacaaaatatattacaaaatat 2509
>ref|NM_168461.2| Drosophila melanogaster Mob1 CG11711-RA, transcript variant A (Mob1), mRNA Length = 4355 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 3430 tacaacaaaatatattacaaaatat 3406
>ref|NM_168460.1| Drosophila melanogaster Mob1 CG11711-RD, transcript variant D (Mob1), mRNA Length = 3483 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 2558 tacaacaaaatatattacaaaatat 2534
>ref|NM_140217.1| Drosophila melanogaster Mob1 CG11711-RC, transcript variant C (Mob1), mRNA Length = 3355 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 2430 tacaacaaaatatattacaaaatat 2406
>ref|NM_027231.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide F (Polr2f), mRNA gb|BC024419.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide F, mRNA (cDNA clone MGC:36565 IMAGE:4983359), complete cds Length = 612 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 472 agctatgaggactggggagtcgacgagct 500 ||||||||||||||||| || |||||||| Sbjct: 388 agctatgaggactggggcgtggacgagct 416
>dbj|AK165600.1| Mus musculus B cells CRL-1669 BCL1 Clone 13.20-3B3 cDNA, RIKEN full-length enriched library, clone:G430042P11 product:DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) homolog [Rattus norvegicus], full insert sequence Length = 546 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 472 agctatgaggactggggagtcgacgagct 500 ||||||||||||||||| || |||||||| Sbjct: 415 agctatgaggactggggcgtggacgagct 443
>dbj|AK169434.1| Mus musculus 16 days embryo whole body cDNA, RIKEN full-length enriched library, clone:K630068M18 product:DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) homolog [Rattus norvegicus], full insert sequence Length = 543 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 472 agctatgaggactggggagtcgacgagct 500 ||||||||||||||||| || |||||||| Sbjct: 404 agctatgaggactggggcgtggacgagct 432
>gb|AC010033.8| Drosophila melanogaster 3L BAC RP98-3I5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 188653 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 53510 tacaacaaaatatattacaaaatat 53534
>dbj|AK007913.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810060D16 product:DNA-DIRECTED RNA POLYMERASE II 14.4 KDA POLYPEPTIDE (EC 2.7.7.6) (RPB6) (RPB14.4) homolog [Rattus norvegicus], full insert sequence Length = 534 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 472 agctatgaggactggggagtcgacgagct 500 ||||||||||||||||| || |||||||| Sbjct: 403 agctatgaggactggggcgtggacgagct 431
>gb|AC073429.6| Homo sapiens BAC clone RP11-775H9 from 4, complete sequence Length = 114909 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 acaacaaaatatatgacaaaa 309 ||||||||||||||||||||| Sbjct: 12142 acaacaaaatatatgacaaaa 12122
>gb|AY255102.1| Rattus norvegicus type 1 transmembrane protein FN14 mRNA, complete cds Length = 390 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 aacaccaacccgaatcccaac 51 ||||||||||||||||||||| Sbjct: 62 aacaccaacccgaatcccaac 42
>gb|AF176516.2|AF176516 Mus musculus E2F1-inducible (Eig4) mRNA, complete sequence Length = 1953 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 472 agctatgaggactggggagtcgacgagct 500 ||||||||||||||||| || |||||||| Sbjct: 1822 agctatgaggactggggcgtggacgagct 1850
>emb|BX088596.8| Zebrafish DNA sequence from clone CH211-285J6 in linkage group 14, complete sequence Length = 142350 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 acaaaatatatgacaaaatat 312 ||||||||||||||||||||| Sbjct: 86556 acaaaatatatgacaaaatat 86536
>gb|BT021437.1| Drosophila melanogaster GH07469 full insert cDNA Length = 3354 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 2410 tacaacaaaatatattacaaaatat 2386
>ref|XM_766473.1| Giardia lamblia ATCC 50803 axoneme-associated protein (GLP_630_63094_59807) partial mRNA Length = 3288 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 tcgacgagctcattgtggagg 511 ||||||||||||||||||||| Sbjct: 2279 tcgacgagctcattgtggagg 2259
>gb|AC004438.1|AC004438 Drosophila melanogaster DNA sequence (P1 DS03786 (D63)), complete sequence Length = 83340 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 tacaacaaaatatatgacaaaatat 312 ||||||||||||||| ||||||||| Sbjct: 5396 tacaacaaaatatattacaaaatat 5372
>gb|L08196.1|RCCSCP Ricinus communis (clone PST293) sugar carrier protein (RCSTC) mRNA, complete CDS Length = 1779 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 626 ttatgttactgtaacatgtgt 646 ||||||||||||||||||||| Sbjct: 154 ttatgttactgtaacatgtgt 174
>dbj|AP001578.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1954F7 Length = 239057 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 gaagaaaaggaacaggaaaag 270 ||||||||||||||||||||| Sbjct: 166095 gaagaaaaggaacaggaaaag 166075
>emb|AL591921.6| Mouse DNA sequence from clone RP23-28O11 on chromosome 15, complete sequence Length = 116704 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 472 agctatgaggactggggagtcgacgagct 500 ||||||||||||||||| || |||||||| Sbjct: 100987 agctatgaggactggggcgtggacgagct 100959 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 127,186,760 Number of extensions: 6561987 Number of successful extensions: 132259 Number of sequences better than 10.0: 97 Number of HSP's gapped: 132239 Number of HSP's successfully gapped: 134 Length of query: 770 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 748 Effective length of database: 18,508,616,841 Effective search space: 13844445397068 Effective search space used: 13844445397068 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
