ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf123n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os11g04670:12011.t00360:unspliced-genomic 2-isopropylmal... 42 0.006
2LOC_Os12g04440:12012.t00333:unspliced-genomic 2-isopropylmal... 41 0.008
3LOC_Os04g33190:12004.t02995:unspliced-genomic acetyl-coenzym... 35 0.52
4LOC_Os04g37790:12004.t03349:unspliced-genomic expressed protein 34 1.4
5LOC_Os06g23620:12006.t02174:unspliced-genomic conserved hypo... 34 1.9
6LOC_Os07g05760:12007.t00459:unspliced-genomic hypothetical p... 25 2.8
7LOC_Os10g39470:12010.t03189:unspliced-genomic expressed protein 33 3.5
8LOC_Os05g06670:12005.t00557:unspliced-genomic gibberellin 2-... 33 3.5
9LOC_Os06g43420:12006.t04032:unspliced-genomic cytochrome P45... 29 3.6
10LOC_Os02g01350:12002.t00035:unspliced-genomic expressed protein 25 4.4
11LOC_Os11g19100:12011.t01679:unspliced-genomic retrotransposo... 32 4.8
12LOC_Os11g07890:12011.t00680:unspliced-genomic transposon pro... 32 4.8
13LOC_Os08g17294:12008.t01599:unspliced-genomic TTN10, putativ... 32 4.8
14LOC_Os08g16730:12008.t01545:unspliced-genomic hypothetical p... 32 4.8
15LOC_Os02g51119:12002.t005561:unspliced-genomic expressed pro... 32 4.8
16LOC_Os02g18820:12002.t01675:unspliced-genomic nucleotide bin... 32 4.8
17LOC_Os06g12980:12006.t01174:unspliced-genomic cyclin delta-2... 29 5.6
18LOC_Os07g35680:12007.t03243:unspliced-genomic receptor-like ... 25 5.8
19LOC_Os11g16770:12011.t01457:unspliced-genomic ATP-dependent ... 32 6.7
20LOC_Os10g21060:12010.t01597:unspliced-genomic cytochrome P45... 32 6.7
21LOC_Os07g04240:12007.t00312:unspliced-genomic succinate dehy... 32 6.7
22LOC_Os05g16290:12005.t01399:unspliced-genomic transposon pro... 32 6.7
23LOC_Os04g23090:12004.t02037:unspliced-genomic hypothetical p... 32 6.7
24LOC_Os02g46790:12002.t04266:unspliced-genomic hypothetical p... 32 6.7
25LOC_Os10g16974:12010.t01258:unspliced-genomic flavonoid 3-mo... 26 7.4
26LOC_Os11g19810:12011.t01751:unspliced-genomic PWWP domain co... 31 9.1
27LOC_Os09g32120:12009.t02828:unspliced-genomic hypothetical p... 31 9.1
28LOC_Os08g06500:12008.t00540:unspliced-genomic expressed protein 31 9.1
29LOC_Os06g51310:12006.t04814:unspliced-genomic PINHEAD protei... 31 9.1
30LOC_Os05g43860:12005.t03875:unspliced-genomic expressed protein 31 9.1
31LOC_Os03g28100:12003.t02483:unspliced-genomic conserved hypo... 31 9.1
32LOC_Os02g58490:12002.t05420:unspliced-genomic PINHEAD protei... 31 9.1
33LOC_Os02g08160:12002.t00712:unspliced-genomic F-box domain c... 31 9.1
34LOC_Os01g69140:12001.t06268:unspliced-genomic regulatory pro... 31 9.1
35LOC_Os01g58230:12001.t05221:unspliced-genomic conserved hypo... 31 9.1

>LOC_Os11g04670:12011.t00360:unspliced-genomic 2-isopropylmalate synthase B, putative, expressed|
          Length = 5884
 Score = 41.8 bits (85), Expect = 0.006
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1 / +2

                                              
Query: 836  FFFFFCLTRKHTDFLHFIRLLLYTRYKTQVTELY 735
            FFF FCL +   +F+HF +   Y+RYK+ V  +Y
Sbjct: 2873 FFFIFCLFQVTENFMHFCKCSAYSRYKSTVDFMY 2974



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>LOC_Os12g04440:12012.t00333:unspliced-genomic 2-isopropylmalate synthase B, putative, expressed|
          Length = 5978

 Score = 41.4 bits (84), Expect = 0.008
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1 / +2

                                              
Query: 836  FFFFFCLTRKHTDFLHFIRLLLYTRYKTQVTELY 735
            FFF FCL +   +F+HF +   Y+RYK+ V  +Y
Sbjct: 2888 FFFIFCLFQVTGNFMHFCKYSAYSRYKSTVDFMY 2989



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>LOC_Os04g33190:12004.t02995:unspliced-genomic acetyl-coenzyme A synthetase 2, putative, expressed|
          Length = 5318

 Score = 35.4 bits (71), Expect = 0.52
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1 / -3

                                       
Query: 139 RQSDGPPRLSYVYMSTQGFVSRWLLLVL 222
           R+++GPP LS +Y+S  GF S + LLV+
Sbjct: 189 RRNEGPPSLSTLYVSLLGFSSSFFLLVV 106



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>LOC_Os04g37790:12004.t03349:unspliced-genomic expressed protein|
          Length = 2644

 Score = 34.1 bits (68), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3 / -1

                                         
Query: 444  SWATCTTEPTVPPPSVGVGIPEVITWSWK 358
            S + C+   T PPPS G   P V  W W+
Sbjct: 1819 STSGCSASWTCPPPSTGATPPPVCPWRWR 1733



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>LOC_Os06g23620:12006.t02174:unspliced-genomic conserved hypothetical protein|
          Length = 602

 Score = 33.6 bits (67), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2 / +1

                                                     
Query: 401 DGGGTVGSVVQVAQEMFGTREEGQKPE*RQKGRKRSRNYWGR 526
           +GGG V + V+ A E        ++   R +GR+R R +W R
Sbjct: 103 EGGGEVEAAVERAAERSAVERSRRRRGRRWRGRRRGRRWWHR 228



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>LOC_Os07g05760:12007.t00459:unspliced-genomic hypothetical protein|
          Length = 975

 Score = 25.4 bits (49), Expect(2) = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3 / +1

                                       
Query: 477 GFCPSSLVPNISWATCTTEPTVPPPSVG 394
           G CP + V +        E  +PPPS+G
Sbjct: 490 GSCPQTHVASPKGGGARVERRLPPPSLG 573



 Score = 24.9 bits (48), Expect(2) = 2.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3 / +1

                      
Query: 411 PPPSVGVGIPE 379
           PPP +GVG+P+
Sbjct: 658 PPPRLGVGLPQ 690



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>LOC_Os10g39470:12010.t03189:unspliced-genomic expressed protein|
          Length = 8778

 Score = 32.7 bits (65), Expect = 3.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2 / +1

                                               
Query: 407  GGTVGSVVQVAQEMFGTREEGQKPE*RQKGRKRSR 511
            GGT G     A+E +G REEG   + R+ GR R +
Sbjct: 6730 GGTGGGGACAARERWGRREEGGSGDTREGGRDRRK 6834



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>LOC_Os05g06670:12005.t00557:unspliced-genomic gibberellin 2-oxidase, putative, expressed|
          Length = 6376

 Score = 32.7 bits (65), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3 / +2

                                    
Query: 462 SLVPNISWATCTTEPTVPPPSVGVG 388
           S   + SW+TC++ PT PP   G G
Sbjct: 383 STATSASWSTCSSTPTPPPSRTGPG 457



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>LOC_Os06g43420:12006.t04032:unspliced-genomic cytochrome P450 71D11, putative, expressed|
          Length = 1698

 Score = 29.5 bits (58), Expect(2) = 3.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3 / +2

                                    
Query: 3   SITKPCTT*RGALRRPSCCCFASTP 77
           S T PC T RGA  R  C   AS+P
Sbjct: 164 SRTSPCATWRGATARSCCSGSASSP 238



 Score = 24.0 bits (46), Expect(2) = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2 / +3

                                   
Query: 389 PTPTDGGGTVGSVVQVAQEMFGTR 460
           PTP  GGG  G+  Q  +   G R
Sbjct: 477 PTPGGGGGVAGAGRQPERAAVGAR 548



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>LOC_Os02g01350:12002.t00035:unspliced-genomic expressed protein|
          Length = 4644

 Score = 24.9 bits (48), Expect(2) = 4.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2 / +2

                                         
Query: 101 PSPGAGVIRLPSNGRVMAPPGYPTYTCQLR 190
           P+P    +RLP   R+ APP  P    Q R
Sbjct: 212 PTPLPAPLRLPRLHRLRAPPRRPPRPPQAR 301



 Score = 24.4 bits (47), Expect(2) = 4.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2 / +1

                                                    
Query: 305 TKSSARKIDEEKQTTPKSFQDQVMTSGIPTPTDGGGTVGSV 427
           T++  R       T+P+S      T   P+ T G  T GSV
Sbjct: 388 TRARPRSGRSPSPTSPESSASSTSTGWPPSGTRGTSTSGSV 510



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>LOC_Os11g19100:12011.t01679:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 5811

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3 / +1

                                   
Query: 363  WKLFGVVCFSSSIFLAELFVAEI 295
            W+LFG+VC    IF + LF+  +
Sbjct: 4612 WRLFGMVCLRLEIFFSSLFLVNL 4680



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>LOC_Os11g07890:12011.t00680:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 11073

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3 / -1

                                                  
Query: 720  CQTQDSFRDTRHHAGWPAHNHKNRMPSLVT*TSTHKLP 607
            C  + S R+   H     HNH    PSL +  +TH LP
Sbjct: 1752 CDCKHSSRNLTSHNHQQHHNHSMHPPSLSSVCTTHSLP 1639



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>LOC_Os08g17294:12008.t01599:unspliced-genomic TTN10, putative, expressed|
          Length = 10681

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2 / -1

                                     
Query: 458  REEGQKPE*RQKGRKRSRNYWGRAI 532
            R EG+  + R++GR R R +WGR +
Sbjct: 7093 RWEGEGHDGRERGRGRERGHWGRGV 7019



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>LOC_Os08g16730:12008.t01545:unspliced-genomic hypothetical protein|
          Length = 297

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3 / -2

                                 
Query: 468 PSSLVPNISWATCTTEPTVPPP 403
           PSSLVP+I+ A   + P +PPP
Sbjct: 251 PSSLVPSIALAPSPSSPPLPPP 186



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>LOC_Os02g51119:12002.t005561:unspliced-genomic expressed protein|
          Length = 10839

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3 / -2

                                       
Query: 285  VRPTLILLKHPHRGRGSPMPTQHQ**P 205
            ++PTL L + PHR    P  T HQ**P
Sbjct: 1454 MKPTLPLSRRPHREVSIPQITHHQ**P 1374



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>LOC_Os02g18820:12002.t01675:unspliced-genomic nucleotide binding protein, putative, expressed|
          Length = 13950

 Score = 32.2 bits (64), Expect = 4.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1 / +1

                                     
Query: 562  WEGLCIIIYYFRDCRWEFVCASLCD 636
            W   CI + Y    RW ++C   CD
Sbjct: 3286 WNQYCIHVQYLTQ*RWNYICKPSCD 3360



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>LOC_Os06g12980:12006.t01174:unspliced-genomic cyclin delta-2, putative, expressed|
          Length = 4031

 Score = 29.5 bits (58), Expect(2) = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2 / -2

                                    
Query: 82  RCGVEAKQQQDGRRNAPLHVVHGLV 8
           +CG     +Q  RR+ P+HV HG V
Sbjct: 610 KCGRPLIYRQAARRHEPIHVAHGEV 536



 Score = 24.4 bits (47), Expect(2) = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2 / -3

                                 
Query: 274  TYLTEASAPGKREPHADATPV 212
            TYL++A+AP      ADA PV
Sbjct: 3552 TYLSQANAPRGS*FRADAAPV 3490



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>LOC_Os07g35680:12007.t03243:unspliced-genomic receptor-like serine-threonine protein kinase, putative, expressed|
          Length = 6726

 Score = 24.9 bits (48), Expect(2) = 5.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2 / +1

                                
Query: 98  SPSPGAGVIRLPSNGRVMAPP 160
           SP+P  G  RLP      APP
Sbjct: 262 SPAPSPGTRRLPRPSSPRAPP 324



 Score = 24.0 bits (46), Expect(2) = 5.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3 / +1

                         
Query: 15  PCTT*RGALRRPSC 56
           P TT RGA  RP+C
Sbjct: 214 PATTRRGAPTRPTC 255



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>LOC_Os11g16770:12011.t01457:unspliced-genomic ATP-dependent Clp protease ATP-binding subunit clpA homolog|
            CD4B,chloroplast precursor, putative, expressed
          Length = 5299

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1 / -2

                                                  
Query: 652  VFVIVCGPSCVMSCISETILCLAA*ELQYNSVTCVLYL 765
            VF+ V     V+SC S +  C A   L+++SV+C++++
Sbjct: 4239 VFLSVRAEMLVLSCSS*SRSCFACSGLKFDSVSCIIWM 4126



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>LOC_Os10g21060:12010.t01597:unspliced-genomic cytochrome P450 76B1, putative|
          Length = 1489

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3 / -3

                                      
Query: 471 CPSSLVPNISWATCTTEPTVPPPSVGV 391
           C S +  N +W TCT  P  PP +  +
Sbjct: 569 CMSIMAANAAWPTCTGAPAPPPDAADI 489



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>LOC_Os07g04240:12007.t00312:unspliced-genomic succinate dehydrogenase flavoprotein subunit,mitochondrial|
           precursor, putative, expressed
          Length = 5943

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1 / +1

                                  
Query: 562 WEGLCIIIYYFRDCRWEFVCASL 630
           W+G+ + IY F  C W + C SL
Sbjct: 325 WDGIYLFIYIFFGCLWWWWCGSL 393



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>LOC_Os05g16290:12005.t01399:unspliced-genomic transposon protein, putative, unclassified, expressed|
          Length = 5815

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1 / +3

                                          
Query: 553 LFTWEGLCIIIYYFRDCRWEFVCASLCDQRW 645
           L  W+G C+I +  R   + F C  +C+  W
Sbjct: 840 LLVWQGYCLIFH*TR*FSFLFFCTCVCEYSW 932



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>LOC_Os04g23090:12004.t02037:unspliced-genomic hypothetical protein|
          Length = 201

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3 / -2

                                    
Query: 471 CPSSLVPNISWATCTTEPTVPPPSV 397
           C +SL+PN SW +  + P +P P +
Sbjct: 119 CWASLMPNSSWRSLCSSPEIPSPEM 45



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>LOC_Os02g46790:12002.t04266:unspliced-genomic hypothetical protein|
          Length = 351

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2 / -3

                                             
Query: 241 REPHADATPVIAIWTQIPELTCIRRITWGGHHSA 140
           R  H DA+     WT+ P   C  R+  GGH+SA
Sbjct: 289 RALHPDASQKDETWTKSPLSPCGGRLRRGGHYSA 188



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>LOC_Os10g16974:12010.t01258:unspliced-genomic flavonoid 3-monooxygenase, putative, expressed|
          Length = 10082

 Score = 25.8 bits (50), Expect(2) = 7.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3 / +2

                                    
Query: 441 WATCTTEPTVPPPSVGVGIPEVITW 367
           W   ++ PT+P  + G   P   TW
Sbjct: 398 WRRSSSAPTMPTSAAGHATPAASTW 472



 Score = 22.6 bits (43), Expect(2) = 7.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1 / +2

                      
Query: 254 RTGEEGAPCRR 222
           RTG  GAPC R
Sbjct: 503 RTGRGGAPCGR 535



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>LOC_Os11g19810:12011.t01751:unspliced-genomic PWWP domain containing protein, expressed|
          Length = 4676

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1 / -3

                                            
Query: 619  CASLCDQRWHSVFVIVCGPSCVMSCISETILC 714
            C + C   WH  FVI   P C+   +S  + C
Sbjct: 2355 CINCCPFTWHRTFVIHIKPICIF*GVSVLLCC 2260



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>LOC_Os09g32120:12009.t02828:unspliced-genomic hypothetical protein|
          Length = 4987

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3 / +3

                                  
Query: 15   PCTT*RGALRRPSCCCFASTPQ 80
            PC+   G  RR +CCC A+ P+
Sbjct: 4875 PCSCASGGTRRGACCCTATQPR 4940



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>LOC_Os08g06500:12008.t00540:unspliced-genomic expressed protein|
          Length = 7789

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3 / +2

                                 
Query: 15  PCTT*RGALRRPSCCCFASTPQ 80
           PC+   G  RR +CCC A+ P+
Sbjct: 275 PCSCPSGGTRRGACCCTATPPR 340



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>LOC_Os06g51310:12006.t04814:unspliced-genomic PINHEAD protein, putative, expressed|
          Length = 8406

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2 / +1

                                
Query: 395  PTDGGGTVGSVVQVAQEMFG 454
            P D GGTV SVVQ  QE +G
Sbjct: 4273 PVDQGGTVKSVVQYFQETYG 4332



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>LOC_Os05g43860:12005.t03875:unspliced-genomic expressed protein|
          Length = 2865

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1 / -1

                                   
Query: 178  MSTQGFVSRWLLLVLRRHGAPSS 246
            + T GF   WLL +L R GAP S
Sbjct: 1740 LRTSGFPKLWLLPILERRGAPRS 1672



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>LOC_Os03g28100:12003.t02483:unspliced-genomic conserved hypothetical protein|
          Length = 1396

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3 / +3

                                
Query: 279  PTLILLKHPHRGRGSPMPTQ 220
            P   LL  PHRGRG+P PT+
Sbjct: 999  PPCPLLPLPHRGRGAPPPTR 1058



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>LOC_Os02g58490:12002.t05420:unspliced-genomic PINHEAD protein, putative, expressed|
          Length = 7271

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2 / +3

                                
Query: 395  PTDGGGTVGSVVQVAQEMFG 454
            P D GGTV SVVQ  QE +G
Sbjct: 3057 PVDEGGTVKSVVQYFQETYG 3116



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>LOC_Os02g08160:12002.t00712:unspliced-genomic F-box domain containing protein, expressed|
          Length = 3624

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +2 / +2

                                                          
Query: 107 PGAGVIRLPSNGRVMAPPGYPTYTCQLRDLCPDGYYWCCVGMGLPLP 247
           P  G    P  G    PPG+ T   +     P  + WC      P P
Sbjct: 23  PSTGRASAPPTGTTSEPPGWATAWTRRGSRSPRSWTWCSASSTSPSP 163



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>LOC_Os01g69140:12001.t06268:unspliced-genomic regulatory protein, putative, expressed|
          Length = 1724

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2 / +2

                                 
Query: 101  PSPGAGVIRLPSNGRVMAPPG 163
            P P  GV R+P++ R  APPG
Sbjct: 1622 PQPSRGVARVPADARRAAPPG 1684



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>LOC_Os01g58230:12001.t05221:unspliced-genomic conserved hypothetical protein|
          Length = 2229

 Score = 31.3 bits (62), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3 / +2

                                  
Query: 15   PCTT*RGALRRPSCCCFASTPQ 80
            PC+   G  RR +CCC A+ P+
Sbjct: 2096 PCSCASGGTRRGACCCTATPPR 2161


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 343,346,706
Number of extensions: 5871762
Number of successful extensions: 23653
Number of sequences better than 10.0: 35
Length of query: 279
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 230
Effective length of database: 52,856,264
Effective search space: 12156940720
Effective search space used: 12156940720
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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