| Clone Name | FLbaf123n07 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os11g04670:12011.t00360:unspliced-genomic 2-isopropylmalate synthase B, putative, expressed| Length = 5884 Score = 41.8 bits (85), Expect = 0.006 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -1 / +2 Query: 836 FFFFFCLTRKHTDFLHFIRLLLYTRYKTQVTELY 735 FFF FCL + +F+HF + Y+RYK+ V +Y Sbjct: 2873 FFFIFCLFQVTENFMHFCKCSAYSRYKSTVDFMY 2974
>LOC_Os12g04440:12012.t00333:unspliced-genomic 2-isopropylmalate synthase B, putative, expressed| Length = 5978 Score = 41.4 bits (84), Expect = 0.008 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -1 / +2 Query: 836 FFFFFCLTRKHTDFLHFIRLLLYTRYKTQVTELY 735 FFF FCL + +F+HF + Y+RYK+ V +Y Sbjct: 2888 FFFIFCLFQVTGNFMHFCKYSAYSRYKSTVDFMY 2989
>LOC_Os04g33190:12004.t02995:unspliced-genomic acetyl-coenzyme A synthetase 2, putative, expressed| Length = 5318 Score = 35.4 bits (71), Expect = 0.52 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = +1 / -3 Query: 139 RQSDGPPRLSYVYMSTQGFVSRWLLLVL 222 R+++GPP LS +Y+S GF S + LLV+ Sbjct: 189 RRNEGPPSLSTLYVSLLGFSSSFFLLVV 106
>LOC_Os04g37790:12004.t03349:unspliced-genomic expressed protein| Length = 2644 Score = 34.1 bits (68), Expect = 1.4 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 / -1 Query: 444 SWATCTTEPTVPPPSVGVGIPEVITWSWK 358 S + C+ T PPPS G P V W W+ Sbjct: 1819 STSGCSASWTCPPPSTGATPPPVCPWRWR 1733
>LOC_Os06g23620:12006.t02174:unspliced-genomic conserved hypothetical protein| Length = 602 Score = 33.6 bits (67), Expect = 1.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 / +1 Query: 401 DGGGTVGSVVQVAQEMFGTREEGQKPE*RQKGRKRSRNYWGR 526 +GGG V + V+ A E ++ R +GR+R R +W R Sbjct: 103 EGGGEVEAAVERAAERSAVERSRRRRGRRWRGRRRGRRWWHR 228
>LOC_Os07g05760:12007.t00459:unspliced-genomic hypothetical protein| Length = 975 Score = 25.4 bits (49), Expect(2) = 2.8 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = -3 / +1 Query: 477 GFCPSSLVPNISWATCTTEPTVPPPSVG 394 G CP + V + E +PPPS+G Sbjct: 490 GSCPQTHVASPKGGGARVERRLPPPSLG 573 Score = 24.9 bits (48), Expect(2) = 2.8 Identities = 7/11 (63%), Positives = 10/11 (90%) Frame = -3 / +1 Query: 411 PPPSVGVGIPE 379 PPP +GVG+P+ Sbjct: 658 PPPRLGVGLPQ 690
>LOC_Os10g39470:12010.t03189:unspliced-genomic expressed protein| Length = 8778 Score = 32.7 bits (65), Expect = 3.5 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 / +1 Query: 407 GGTVGSVVQVAQEMFGTREEGQKPE*RQKGRKRSR 511 GGT G A+E +G REEG + R+ GR R + Sbjct: 6730 GGTGGGGACAARERWGRREEGGSGDTREGGRDRRK 6834
>LOC_Os05g06670:12005.t00557:unspliced-genomic gibberellin 2-oxidase, putative, expressed| Length = 6376 Score = 32.7 bits (65), Expect = 3.5 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 / +2 Query: 462 SLVPNISWATCTTEPTVPPPSVGVG 388 S + SW+TC++ PT PP G G Sbjct: 383 STATSASWSTCSSTPTPPPSRTGPG 457
>LOC_Os06g43420:12006.t04032:unspliced-genomic cytochrome P450 71D11, putative, expressed| Length = 1698 Score = 29.5 bits (58), Expect(2) = 3.6 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 / +2 Query: 3 SITKPCTT*RGALRRPSCCCFASTP 77 S T PC T RGA R C AS+P Sbjct: 164 SRTSPCATWRGATARSCCSGSASSP 238 Score = 24.0 bits (46), Expect(2) = 3.6 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 / +3 Query: 389 PTPTDGGGTVGSVVQVAQEMFGTR 460 PTP GGG G+ Q + G R Sbjct: 477 PTPGGGGGVAGAGRQPERAAVGAR 548
>LOC_Os02g01350:12002.t00035:unspliced-genomic expressed protein| Length = 4644 Score = 24.9 bits (48), Expect(2) = 4.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 / +2 Query: 101 PSPGAGVIRLPSNGRVMAPPGYPTYTCQLR 190 P+P +RLP R+ APP P Q R Sbjct: 212 PTPLPAPLRLPRLHRLRAPPRRPPRPPQAR 301 Score = 24.4 bits (47), Expect(2) = 4.4 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +2 / +1 Query: 305 TKSSARKIDEEKQTTPKSFQDQVMTSGIPTPTDGGGTVGSV 427 T++ R T+P+S T P+ T G T GSV Sbjct: 388 TRARPRSGRSPSPTSPESSASSTSTGWPPSGTRGTSTSGSV 510
>LOC_Os11g19100:12011.t01679:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 5811 Score = 32.2 bits (64), Expect = 4.8 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 / +1 Query: 363 WKLFGVVCFSSSIFLAELFVAEI 295 W+LFG+VC IF + LF+ + Sbjct: 4612 WRLFGMVCLRLEIFFSSLFLVNL 4680
>LOC_Os11g07890:12011.t00680:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 11073 Score = 32.2 bits (64), Expect = 4.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -3 / -1 Query: 720 CQTQDSFRDTRHHAGWPAHNHKNRMPSLVT*TSTHKLP 607 C + S R+ H HNH PSL + +TH LP Sbjct: 1752 CDCKHSSRNLTSHNHQQHHNHSMHPPSLSSVCTTHSLP 1639
>LOC_Os08g17294:12008.t01599:unspliced-genomic TTN10, putative, expressed| Length = 10681 Score = 32.2 bits (64), Expect = 4.8 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 / -1 Query: 458 REEGQKPE*RQKGRKRSRNYWGRAI 532 R EG+ + R++GR R R +WGR + Sbjct: 7093 RWEGEGHDGRERGRGRERGHWGRGV 7019
>LOC_Os08g16730:12008.t01545:unspliced-genomic hypothetical protein| Length = 297 Score = 32.2 bits (64), Expect = 4.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -3 / -2 Query: 468 PSSLVPNISWATCTTEPTVPPP 403 PSSLVP+I+ A + P +PPP Sbjct: 251 PSSLVPSIALAPSPSSPPLPPP 186
>LOC_Os02g51119:12002.t005561:unspliced-genomic expressed protein| Length = 10839 Score = 32.2 bits (64), Expect = 4.8 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 / -2 Query: 285 VRPTLILLKHPHRGRGSPMPTQHQ**P 205 ++PTL L + PHR P T HQ**P Sbjct: 1454 MKPTLPLSRRPHREVSIPQITHHQ**P 1374
>LOC_Os02g18820:12002.t01675:unspliced-genomic nucleotide binding protein, putative, expressed| Length = 13950 Score = 32.2 bits (64), Expect = 4.8 Identities = 9/25 (36%), Positives = 12/25 (48%) Frame = +1 / +1 Query: 562 WEGLCIIIYYFRDCRWEFVCASLCD 636 W CI + Y RW ++C CD Sbjct: 3286 WNQYCIHVQYLTQ*RWNYICKPSCD 3360
>LOC_Os06g12980:12006.t01174:unspliced-genomic cyclin delta-2, putative, expressed| Length = 4031 Score = 29.5 bits (58), Expect(2) = 5.6 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 / -2 Query: 82 RCGVEAKQQQDGRRNAPLHVVHGLV 8 +CG +Q RR+ P+HV HG V Sbjct: 610 KCGRPLIYRQAARRHEPIHVAHGEV 536 Score = 24.4 bits (47), Expect(2) = 5.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 / -3 Query: 274 TYLTEASAPGKREPHADATPV 212 TYL++A+AP ADA PV Sbjct: 3552 TYLSQANAPRGS*FRADAAPV 3490
>LOC_Os07g35680:12007.t03243:unspliced-genomic receptor-like serine-threonine protein kinase, putative, expressed| Length = 6726 Score = 24.9 bits (48), Expect(2) = 5.8 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = +2 / +1 Query: 98 SPSPGAGVIRLPSNGRVMAPP 160 SP+P G RLP APP Sbjct: 262 SPAPSPGTRRLPRPSSPRAPP 324 Score = 24.0 bits (46), Expect(2) = 5.8 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +3 / +1 Query: 15 PCTT*RGALRRPSC 56 P TT RGA RP+C Sbjct: 214 PATTRRGAPTRPTC 255
>LOC_Os11g16770:12011.t01457:unspliced-genomic ATP-dependent Clp protease ATP-binding subunit clpA homolog| CD4B,chloroplast precursor, putative, expressed Length = 5299 Score = 31.8 bits (63), Expect = 6.7 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 / -2 Query: 652 VFVIVCGPSCVMSCISETILCLAA*ELQYNSVTCVLYL 765 VF+ V V+SC S + C A L+++SV+C++++ Sbjct: 4239 VFLSVRAEMLVLSCSS*SRSCFACSGLKFDSVSCIIWM 4126
>LOC_Os10g21060:12010.t01597:unspliced-genomic cytochrome P450 76B1, putative| Length = 1489 Score = 31.8 bits (63), Expect = 6.7 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -3 / -3 Query: 471 CPSSLVPNISWATCTTEPTVPPPSVGV 391 C S + N +W TCT P PP + + Sbjct: 569 CMSIMAANAAWPTCTGAPAPPPDAADI 489
>LOC_Os07g04240:12007.t00312:unspliced-genomic succinate dehydrogenase flavoprotein subunit,mitochondrial| precursor, putative, expressed Length = 5943 Score = 31.8 bits (63), Expect = 6.7 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 / +1 Query: 562 WEGLCIIIYYFRDCRWEFVCASL 630 W+G+ + IY F C W + C SL Sbjct: 325 WDGIYLFIYIFFGCLWWWWCGSL 393
>LOC_Os05g16290:12005.t01399:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 5815 Score = 31.8 bits (63), Expect = 6.7 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +1 / +3 Query: 553 LFTWEGLCIIIYYFRDCRWEFVCASLCDQRW 645 L W+G C+I + R + F C +C+ W Sbjct: 840 LLVWQGYCLIFH*TR*FSFLFFCTCVCEYSW 932
>LOC_Os04g23090:12004.t02037:unspliced-genomic hypothetical protein| Length = 201 Score = 31.8 bits (63), Expect = 6.7 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 / -2 Query: 471 CPSSLVPNISWATCTTEPTVPPPSV 397 C +SL+PN SW + + P +P P + Sbjct: 119 CWASLMPNSSWRSLCSSPEIPSPEM 45
>LOC_Os02g46790:12002.t04266:unspliced-genomic hypothetical protein| Length = 351 Score = 31.8 bits (63), Expect = 6.7 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -2 / -3 Query: 241 REPHADATPVIAIWTQIPELTCIRRITWGGHHSA 140 R H DA+ WT+ P C R+ GGH+SA Sbjct: 289 RALHPDASQKDETWTKSPLSPCGGRLRRGGHYSA 188
>LOC_Os10g16974:12010.t01258:unspliced-genomic flavonoid 3-monooxygenase, putative, expressed| Length = 10082 Score = 25.8 bits (50), Expect(2) = 7.4 Identities = 8/25 (32%), Positives = 12/25 (48%) Frame = -3 / +2 Query: 441 WATCTTEPTVPPPSVGVGIPEVITW 367 W ++ PT+P + G P TW Sbjct: 398 WRRSSSAPTMPTSAAGHATPAASTW 472 Score = 22.6 bits (43), Expect(2) = 7.4 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -1 / +2 Query: 254 RTGEEGAPCRR 222 RTG GAPC R Sbjct: 503 RTGRGGAPCGR 535
>LOC_Os11g19810:12011.t01751:unspliced-genomic PWWP domain containing protein, expressed| Length = 4676 Score = 31.3 bits (62), Expect = 9.1 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = +1 / -3 Query: 619 CASLCDQRWHSVFVIVCGPSCVMSCISETILC 714 C + C WH FVI P C+ +S + C Sbjct: 2355 CINCCPFTWHRTFVIHIKPICIF*GVSVLLCC 2260
>LOC_Os09g32120:12009.t02828:unspliced-genomic hypothetical protein| Length = 4987 Score = 31.3 bits (62), Expect = 9.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 / +3 Query: 15 PCTT*RGALRRPSCCCFASTPQ 80 PC+ G RR +CCC A+ P+ Sbjct: 4875 PCSCASGGTRRGACCCTATQPR 4940
>LOC_Os08g06500:12008.t00540:unspliced-genomic expressed protein| Length = 7789 Score = 31.3 bits (62), Expect = 9.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 / +2 Query: 15 PCTT*RGALRRPSCCCFASTPQ 80 PC+ G RR +CCC A+ P+ Sbjct: 275 PCSCPSGGTRRGACCCTATPPR 340
>LOC_Os06g51310:12006.t04814:unspliced-genomic PINHEAD protein, putative, expressed| Length = 8406 Score = 31.3 bits (62), Expect = 9.1 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +2 / +1 Query: 395 PTDGGGTVGSVVQVAQEMFG 454 P D GGTV SVVQ QE +G Sbjct: 4273 PVDQGGTVKSVVQYFQETYG 4332
>LOC_Os05g43860:12005.t03875:unspliced-genomic expressed protein| Length = 2865 Score = 31.3 bits (62), Expect = 9.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 / -1 Query: 178 MSTQGFVSRWLLLVLRRHGAPSS 246 + T GF WLL +L R GAP S Sbjct: 1740 LRTSGFPKLWLLPILERRGAPRS 1672
>LOC_Os03g28100:12003.t02483:unspliced-genomic conserved hypothetical protein| Length = 1396 Score = 31.3 bits (62), Expect = 9.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 / +3 Query: 279 PTLILLKHPHRGRGSPMPTQ 220 P LL PHRGRG+P PT+ Sbjct: 999 PPCPLLPLPHRGRGAPPPTR 1058
>LOC_Os02g58490:12002.t05420:unspliced-genomic PINHEAD protein, putative, expressed| Length = 7271 Score = 31.3 bits (62), Expect = 9.1 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +2 / +3 Query: 395 PTDGGGTVGSVVQVAQEMFG 454 P D GGTV SVVQ QE +G Sbjct: 3057 PVDEGGTVKSVVQYFQETYG 3116
>LOC_Os02g08160:12002.t00712:unspliced-genomic F-box domain containing protein, expressed| Length = 3624 Score = 31.3 bits (62), Expect = 9.1 Identities = 13/47 (27%), Positives = 16/47 (34%) Frame = +2 / +2 Query: 107 PGAGVIRLPSNGRVMAPPGYPTYTCQLRDLCPDGYYWCCVGMGLPLP 247 P G P G PPG+ T + P + WC P P Sbjct: 23 PSTGRASAPPTGTTSEPPGWATAWTRRGSRSPRSWTWCSASSTSPSP 163
>LOC_Os01g69140:12001.t06268:unspliced-genomic regulatory protein, putative, expressed| Length = 1724 Score = 31.3 bits (62), Expect = 9.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 / +2 Query: 101 PSPGAGVIRLPSNGRVMAPPG 163 P P GV R+P++ R APPG Sbjct: 1622 PQPSRGVARVPADARRAAPPG 1684
>LOC_Os01g58230:12001.t05221:unspliced-genomic conserved hypothetical protein| Length = 2229 Score = 31.3 bits (62), Expect = 9.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 / +2 Query: 15 PCTT*RGALRRPSCCCFASTPQ 80 PC+ G RR +CCC A+ P+ Sbjct: 2096 PCSCASGGTRRGACCCTATPPR 2161 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 343,346,706 Number of extensions: 5871762 Number of successful extensions: 23653 Number of sequences better than 10.0: 35 Length of query: 279 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 230 Effective length of database: 52,856,264 Effective search space: 12156940720 Effective search space used: 12156940720 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)