ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf123n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O15232:MATN3_HUMAN Matrilin-3 precursor - Homo sapiens (Human) 33 1.4
2Q8BYZ1:ABI3_MOUSE ABI gene family member 3 - Mus musculus (Mouse) 32 4.1
3Q8WXR4:MYO3B_HUMAN Myosin-IIIB - Homo sapiens (Human) 31 6.9
4Q07824:TPO1_YEAST Polyamine transporter 1 - Saccharomyces cerevi... 30 9.1
5Q2FT32:RS17_METHJ 30S ribosomal protein S17P - Methanospirillum ... 30 9.1
6Q63ZP1:PHF10_XENLA PHD finger protein 10 - Xenopus laevis (Afric... 30 9.1

>O15232:MATN3_HUMAN Matrilin-3 precursor - Homo sapiens (Human)|
          Length = 486
 Score = 33.1 bits (74), Expect = 1.4
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = +2

Query: 176 TCQLRDLCPDGYYWC---CVGMGLPLPRCGCFSKISVGLTDHAISATKSSARKIDEEKQ- 343
           TC +RD C  G + C   CV  G     C C+   ++       SAT+ + R +  E   
Sbjct: 387 TCSVRDKCALGSHGCQHICVSDGAASYHCDCYPGYTLNEDKKTCSATEEARRLVSTEDAC 446

Query: 344 --TTPKSFQDQV 373
                 +FQD+V
Sbjct: 447 GCEATLAFQDKV 458



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>Q8BYZ1:ABI3_MOUSE ABI gene family member 3 - Mus musculus (Mouse)|
          Length = 367

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +2

Query: 113 AGVIRLPSNGRVMAPPGYPTYT----CQLRDLCPDGYYWCCVGMGLPLPRCGCFSKISVG 280
           A V+RLPSN +V+ P   P+ T      L   C D        +   L R G  S+ S+ 
Sbjct: 116 ATVVRLPSNQKVIPPESLPSLTPYHRKPLNFACLDDIGHGVKDLSTQLSRTGTLSRKSIK 175

Query: 281 LTDHAISATKSSARKIDEEKQ 343
                +SAT     +I E  Q
Sbjct: 176 APATPVSATLGRPPRIPEPVQ 196



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>Q8WXR4:MYO3B_HUMAN Myosin-IIIB - Homo sapiens (Human)|
          Length = 1341

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 701  SEIQDITQDGPHTITKTECHRWSHRLAHTNSQR 603
            +E+QD ++ G H + +   HR SH  A +N+ R
Sbjct: 1145 AEVQDCSEPGDHKVLRGSVHRRSHSQAESNNGR 1177



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>Q07824:TPO1_YEAST Polyamine transporter 1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 586

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 405 PSVGVGIPEVITWSWKLFGVVCFSSSIFLA-ELFVAEIA*SVRPTLILLK 259
           P +G  I +  TW W  + V CF+S++F+A  LF  E   +  PT+++ K
Sbjct: 288 PVMGSYIAQRTTWRWLEYVVGCFASAVFVAIVLFFEE---THHPTILVNK 334



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>Q2FT32:RS17_METHJ 30S ribosomal protein S17P - Methanospirillum hungatei (strain JF-1|
           / DSM 864)
          Length = 108

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -1

Query: 800 DFLHFIRLLLYTRYKTQVTELYCNSHAAKHKIVSEIQDITQDGPHTITKT 651
           D+LHF+R   Y RY+ + ++++ ++    H  V ++  I +  P + TKT
Sbjct: 52  DYLHFVRK--YQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLSKTKT 99



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>Q63ZP1:PHF10_XENLA PHD finger protein 10 - Xenopus laevis (African clawed frog)|
          Length = 417

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 191 DLCPDGYYWCCVGMG-LPLPR--CGCFSKISVGLTDHAISATKSSARKIDEEKQ 343
           D C  GY+  CVG+G LP  R  C C  K+         +  K  ARK+   K+
Sbjct: 371 DTCDRGYHTFCVGLGALPSGRWICDCCQKVP--------ATPKKGARKVKNSKE 416


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 142,141,399
Number of extensions: 3134215
Number of successful extensions: 7574
Number of sequences better than 10.0: 6
Number of HSP's gapped: 7571
Number of HSP's successfully gapped: 6
Length of query: 279
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 167
Effective length of database: 69,965,399
Effective search space: 11684221633
Effective search space used: 11684221633
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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