ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf123m20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC024908.22| Homo sapiens 10 BAC RP11-446F3 (Roswell Park Can... 46 0.74
2emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chro... 46 0.74
3emb|CR855189.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 2.9
4ref|NM_001059611.1| Oryza sativa (japonica cultivar-group) Os04g... 44 2.9
5ref|XM_001154456.1| PREDICTED: Pan troglodytes nuclear pore memb... 44 2.9
6ref|XM_001154398.1| PREDICTED: Pan troglodytes nuclear pore memb... 44 2.9
7ref|XM_001154336.1| PREDICTED: Pan troglodytes nuclear pore memb... 44 2.9
8ref|XM_519153.2| PREDICTED: Pan troglodytes nuclear pore membran... 44 2.9
9ref|XM_001154568.1| PREDICTED: Pan troglodytes nuclear pore memb... 44 2.9
10ref|XM_001154106.1| PREDICTED: Pan troglodytes nuclear pore memb... 44 2.9
11gb|AC147910.2| Xenopus tropicalis clone CH216-82H14, complete se... 44 2.9
12gb|AC148837.4| Pan troglodytes BAC clone CH251-3G8 from chromoso... 44 2.9
13gb|AC147913.2| Xenopus tropicalis clone CH216-83K3, complete seq... 44 2.9
14gb|AC142303.1| Pan troglodytes BAC clone RP43-129L21 from 7, com... 44 2.9
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 2.9
16emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4,... 44 2.9
17dbj|AK110706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 2.9

>gb|AC024908.22| Homo sapiens 10 BAC RP11-446F3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 158349
 Score = 46.1 bits (23), Expect = 0.74
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 381  tcccaaatttctggaagaaattg 403
            |||||||||||||||||||||||
Sbjct: 6854 tcccaaatttctggaagaaattg 6876



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>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two
             novel genes and three CpG islands, complete sequence
          Length = 158779

 Score = 46.1 bits (23), Expect = 0.74
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 381   tcccaaatttctggaagaaattg 403
             |||||||||||||||||||||||
Sbjct: 53412 tcccaaatttctggaagaaattg 53390



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>emb|CR855189.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07,
             complete sequence
          Length = 91939

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 150   ctctccctcgactccgtcgccg 171
             ||||||||||||||||||||||
Sbjct: 44346 ctctccctcgactccgtcgccg 44325



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>ref|NM_001059611.1| Oryza sativa (japonica cultivar-group) Os04g0475900 (Os04g0475900)
           mRNA, complete cds
          Length = 853

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 150 ctctccctcgactccgtcgccg 171
           ||||||||||||||||||||||
Sbjct: 387 ctctccctcgactccgtcgccg 366



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>ref|XM_001154456.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121,
            transcript variant 4 (POM121), mRNA
          Length = 5042

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 679  tgccagcagcgggagcagcagc 700
            ||||||||||||||||||||||
Sbjct: 2551 tgccagcagcgggagcagcagc 2572



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>ref|XM_001154398.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121,
            transcript variant 3 (POM121), mRNA
          Length = 4870

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 679  tgccagcagcgggagcagcagc 700
            ||||||||||||||||||||||
Sbjct: 2379 tgccagcagcgggagcagcagc 2400



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>ref|XM_001154336.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121,
            transcript variant 2 (POM121), mRNA
          Length = 4829

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 679  tgccagcagcgggagcagcagc 700
            ||||||||||||||||||||||
Sbjct: 2338 tgccagcagcgggagcagcagc 2359



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>ref|XM_519153.2| PREDICTED: Pan troglodytes nuclear pore membrane protein 121,
            transcript variant 6 (POM121), mRNA
          Length = 5223

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 679  tgccagcagcgggagcagcagc 700
            ||||||||||||||||||||||
Sbjct: 2732 tgccagcagcgggagcagcagc 2753



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>ref|XM_001154568.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121,
            transcript variant 5 (POM121), mRNA
          Length = 5677

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 679  tgccagcagcgggagcagcagc 700
            ||||||||||||||||||||||
Sbjct: 3186 tgccagcagcgggagcagcagc 3207



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>ref|XM_001154106.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121,
            transcript variant 1 (POM121), mRNA
          Length = 6240

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 679  tgccagcagcgggagcagcagc 700
            ||||||||||||||||||||||
Sbjct: 2666 tgccagcagcgggagcagcagc 2687



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>gb|AC147910.2| Xenopus tropicalis clone CH216-82H14, complete sequence
          Length = 136191

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1211  agagagggtgatatctgcctct 1232
             ||||||||||||||||||||||
Sbjct: 82597 agagagggtgatatctgcctct 82618



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>gb|AC148837.4| Pan troglodytes BAC clone CH251-3G8 from chromosome 7, complete
             sequence
          Length = 191956

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 679   tgccagcagcgggagcagcagc 700
             ||||||||||||||||||||||
Sbjct: 28542 tgccagcagcgggagcagcagc 28563



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>gb|AC147913.2| Xenopus tropicalis clone CH216-83K3, complete sequence
          Length = 176651

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1211   agagagggtgatatctgcctct 1232
              ||||||||||||||||||||||
Sbjct: 140870 agagagggtgatatctgcctct 140891



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>gb|AC142303.1| Pan troglodytes BAC clone RP43-129L21 from 7, complete sequence
          Length = 199670

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 679   tgccagcagcgggagcagcagc 700
             ||||||||||||||||||||||
Sbjct: 17914 tgccagcagcgggagcagcagc 17893



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 150      ctctccctcgactccgtcgccg 171
                ||||||||||||||||||||||
Sbjct: 23794279 ctctccctcgactccgtcgccg 23794258



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>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
              complete sequence
          Length = 160155

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 150    ctctccctcgactccgtcgccg 171
              ||||||||||||||||||||||
Sbjct: 115191 ctctccctcgactccgtcgccg 115170



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>dbj|AK110706.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-C07, full
           insert sequence
          Length = 856

 Score = 44.1 bits (22), Expect = 2.9
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 150 ctctccctcgactccgtcgccg 171
           ||||||||||||||||||||||
Sbjct: 389 ctctccctcgactccgtcgccg 368


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 556,861,559
Number of extensions: 29921784
Number of successful extensions: 168167
Number of sequences better than 10.0: 17
Number of HSP's gapped: 168167
Number of HSP's successfully gapped: 17
Length of query: 3022
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2999
Effective length of database: 18,503,978,556
Effective search space: 55493431689444
Effective search space used: 55493431689444
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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