| Clone Name | FLbaf123m20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC024908.22| Homo sapiens 10 BAC RP11-446F3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158349 Score = 46.1 bits (23), Expect = 0.74 Identities = 23/23 (100%) Strand = Plus / Plus Query: 381 tcccaaatttctggaagaaattg 403 ||||||||||||||||||||||| Sbjct: 6854 tcccaaatttctggaagaaattg 6876
>emb|AL713851.8| Human DNA sequence from clone RP11-526P5 on chromosome 10 Contains two novel genes and three CpG islands, complete sequence Length = 158779 Score = 46.1 bits (23), Expect = 0.74 Identities = 23/23 (100%) Strand = Plus / Minus Query: 381 tcccaaatttctggaagaaattg 403 ||||||||||||||||||||||| Sbjct: 53412 tcccaaatttctggaagaaattg 53390
>emb|CR855189.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07, complete sequence Length = 91939 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 150 ctctccctcgactccgtcgccg 171 |||||||||||||||||||||| Sbjct: 44346 ctctccctcgactccgtcgccg 44325
>ref|NM_001059611.1| Oryza sativa (japonica cultivar-group) Os04g0475900 (Os04g0475900) mRNA, complete cds Length = 853 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 150 ctctccctcgactccgtcgccg 171 |||||||||||||||||||||| Sbjct: 387 ctctccctcgactccgtcgccg 366
>ref|XM_001154456.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121, transcript variant 4 (POM121), mRNA Length = 5042 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 2551 tgccagcagcgggagcagcagc 2572
>ref|XM_001154398.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121, transcript variant 3 (POM121), mRNA Length = 4870 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 2379 tgccagcagcgggagcagcagc 2400
>ref|XM_001154336.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121, transcript variant 2 (POM121), mRNA Length = 4829 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 2338 tgccagcagcgggagcagcagc 2359
>ref|XM_519153.2| PREDICTED: Pan troglodytes nuclear pore membrane protein 121, transcript variant 6 (POM121), mRNA Length = 5223 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 2732 tgccagcagcgggagcagcagc 2753
>ref|XM_001154568.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121, transcript variant 5 (POM121), mRNA Length = 5677 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 3186 tgccagcagcgggagcagcagc 3207
>ref|XM_001154106.1| PREDICTED: Pan troglodytes nuclear pore membrane protein 121, transcript variant 1 (POM121), mRNA Length = 6240 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 2666 tgccagcagcgggagcagcagc 2687
>gb|AC147910.2| Xenopus tropicalis clone CH216-82H14, complete sequence Length = 136191 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1211 agagagggtgatatctgcctct 1232 |||||||||||||||||||||| Sbjct: 82597 agagagggtgatatctgcctct 82618
>gb|AC148837.4| Pan troglodytes BAC clone CH251-3G8 from chromosome 7, complete sequence Length = 191956 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 28542 tgccagcagcgggagcagcagc 28563
>gb|AC147913.2| Xenopus tropicalis clone CH216-83K3, complete sequence Length = 176651 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1211 agagagggtgatatctgcctct 1232 |||||||||||||||||||||| Sbjct: 140870 agagagggtgatatctgcctct 140891
>gb|AC142303.1| Pan troglodytes BAC clone RP43-129L21 from 7, complete sequence Length = 199670 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 679 tgccagcagcgggagcagcagc 700 |||||||||||||||||||||| Sbjct: 17914 tgccagcagcgggagcagcagc 17893
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 150 ctctccctcgactccgtcgccg 171 |||||||||||||||||||||| Sbjct: 23794279 ctctccctcgactccgtcgccg 23794258
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence Length = 160155 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 150 ctctccctcgactccgtcgccg 171 |||||||||||||||||||||| Sbjct: 115191 ctctccctcgactccgtcgccg 115170
>dbj|AK110706.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-C07, full insert sequence Length = 856 Score = 44.1 bits (22), Expect = 2.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 150 ctctccctcgactccgtcgccg 171 |||||||||||||||||||||| Sbjct: 389 ctctccctcgactccgtcgccg 368 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 556,861,559 Number of extensions: 29921784 Number of successful extensions: 168167 Number of sequences better than 10.0: 17 Number of HSP's gapped: 168167 Number of HSP's successfully gapped: 17 Length of query: 3022 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2999 Effective length of database: 18,503,978,556 Effective search space: 55493431689444 Effective search space used: 55493431689444 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)