ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf118n12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q47125:CE10_ECOLI Colicin-10 - Escherichia coli 34 0.41
2Q47500:CE05_ECOLI Colicin-5 - Escherichia coli 34 0.41
3O97827:LPHN3_BOVIN Latrophilin-3 precursor - Bos taurus (Bovine) 32 2.6
4Q9DCX8:IYD1_MOUSE Iodotyrosine dehalogenase 1 precursor - Mus mu... 30 7.7
5Q8IZF5:GP113_HUMAN Probable G-protein coupled receptor 113 precu... 30 7.7
6Q63803:GNAS1_RAT Guanine nucleotide-binding protein G(s) subunit... 30 7.7

>Q47125:CE10_ECOLI Colicin-10 - Escherichia coli|
          Length = 490
 Score = 34.3 bits (77), Expect = 0.41
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -3

Query: 325 GGVGALGSMASKSGAYLSTIAWSFTSLDTSPAGRSGRAATEASRRLMARRISTRHMATRL 146
           GG GA G  +  S A  +T  WS   L    A ++ RAA  A+   +A+  S R   T+ 
Sbjct: 45  GGGGAFGGASESSAAIHATAKWSTAQLKKHQAEQAARAA--AAEAALAKAKSQRDALTQR 102

Query: 145 LPALEEEAIVSRVA 104
           L  +  +A+ +  A
Sbjct: 103 LKDIVNDALRANAA 116



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>Q47500:CE05_ECOLI Colicin-5 - Escherichia coli|
          Length = 490

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -3

Query: 325 GGVGALGSMASKSGAYLSTIAWSFTSLDTSPAGRSGRAATEASRRLMARRISTRHMATRL 146
           GG GA G  +  S A  +T  WS   L    A ++ RAA  A+   +A+  S R   T+ 
Sbjct: 45  GGGGAFGGASESSAAIHATAKWSTAQLKKHQAEQAARAA--AAEAALAKAKSQRDALTQR 102

Query: 145 LPALEEEAIVSRVA 104
           L  +  +A+ +  A
Sbjct: 103 LKDIVNDALRANAA 116



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>O97827:LPHN3_BOVIN Latrophilin-3 precursor - Bos taurus (Bovine)|
          Length = 1580

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = -3

Query: 343 PPLGADGGVGALGSMASKSGAYLSTIAWS-FTSLDTSPAGRSGRAATEASRRLMARRIST 167
           PP+      G LG+ ++ +   L T  WS   S   S +GR  R+ +  S  +      T
Sbjct: 490 PPVREISTTGPLGTGSTTTSTTLRTTTWSPGRSTTPSVSGRRNRSTSTPSPAIEVLNDIT 549

Query: 166 RHM--ATRLLPALEE--EAIVSR 110
            H+  A+  +PALEE  EA+ +R
Sbjct: 550 THVPSASPQIPALEESCEAVEAR 572



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>Q9DCX8:IYD1_MOUSE Iodotyrosine dehalogenase 1 precursor - Mus musculus (Mouse)|
          Length = 285

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 476 VLQNRPNHQPLIILMPNDFSSRDRSI 399
           VL  RP+H+ L++L+P  + SRD ++
Sbjct: 245 VLLGRPSHEKLLVLLPVGYPSRDATV 270



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>Q8IZF5:GP113_HUMAN Probable G-protein coupled receptor 113 precursor - Homo sapiens|
           (Human)
          Length = 1079

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 497 TILYNYPVLQNRPNHQPLIILMPNDFSSRDRSIHPTGKPCGCF*SVPGLV 348
           +I  +YP  Q+  NHQP   L+ +        + P G P  C  +VPG++
Sbjct: 190 SICLHYPPCQSLHNHQPCGCLVFSHPEPGYCQLLPPGSPVTCLPAVPGIL 239



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>Q63803:GNAS1_RAT Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas|
           - Rattus norvegicus (Rat)
          Length = 1144

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = -3

Query: 343 PPLGADGGVGALGSMASKSGA---YLSTIAWSFTSLDTSPAGRS---GRAATEASRRLMA 182
           P  GA  G  A+ + A  + A   Y   + W   SL  +PA R+    RAA  A     A
Sbjct: 555 PAAGAVPGASAMSAAARAAAARAAYAGPLVWGARSLSATPAARASLPARAAAAARAASAA 614

Query: 181 RRISTRHMAT 152
           R ++    A+
Sbjct: 615 RAVAAGRSAS 624


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 104,323,805
Number of extensions: 2141780
Number of successful extensions: 5587
Number of sequences better than 10.0: 6
Number of HSP's gapped: 5584
Number of HSP's successfully gapped: 6
Length of query: 217
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 108
Effective length of database: 70,788,284
Effective search space: 7645134672
Effective search space used: 7645134672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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