ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf128k13 |
|---|---|
| Clone Library Name | barley_pub |
>P83877:TXN4A_MOUSE Thioredoxin-like protein 4A - Mus musculus (Mouse)| Length = 142 Score = 265 bits (677), Expect = 1e-70 Identities = 121/142 (85%), Positives = 134/142 (94%) Frame = +3 Query: 93 MSYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYL 272 MSY+LPHLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+MDEVL +AE +KNFAVIYL Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60 Query: 273 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVY 452 VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWAM+DKQE VDI+ETVY Sbjct: 61 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120 Query: 453 RGARKGRGLVIAPKDYSTKYRY 518 RGARKGRGLV++PKDYSTKYRY Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142
>P83876:TXN4A_HUMAN Thioredoxin-like protein 4A - Homo sapiens (Human)| Length = 142 Score = 265 bits (677), Expect = 1e-70 Identities = 121/142 (85%), Positives = 134/142 (94%) Frame = +3 Query: 93 MSYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYL 272 MSY+LPHLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+MDEVL +AE +KNFAVIYL Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60 Query: 273 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVY 452 VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWAM+DKQE VDI+ETVY Sbjct: 61 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120 Query: 453 RGARKGRGLVIAPKDYSTKYRY 518 RGARKGRGLV++PKDYSTKYRY Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142
>P87215:DIMI_SCHPO Mitosis protein dim1 - Schizosaccharomyces pombe (Fission yeast)| Length = 142 Score = 232 bits (591), Expect = 1e-60 Identities = 105/142 (73%), Positives = 126/142 (88%) Frame = +3 Query: 93 MSYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYL 272 MSY LPHLHSGW VDQAIL+E+ERLV+IRFG D DE C++ DEVL +AE + N AVIYL Sbjct: 1 MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60 Query: 273 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVY 452 VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW ++DKQE +DI+ET++ Sbjct: 61 VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120 Query: 453 RGARKGRGLVIAPKDYSTKYRY 518 RGARKG+GLVI+PKDYST++RY Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142
>Q75BD8:DIB1_ASHGO Spliceosomal protein DIB1 - Ashbya gossypii (Yeast) (Eremothecium| gossypii) Length = 143 Score = 196 bits (499), Expect = 6e-50 Identities = 89/138 (64%), Positives = 111/138 (80%) Frame = +3 Query: 96 SYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLV 275 S LPHLHSGW VDQAI+ EEERLV+IRFG D D +CM MDE+L +AE + NFA IY+ Sbjct: 3 SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62 Query: 276 DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVYR 455 D TEVPDFN MYEL DP TVMFF++NKH+ D GTGNNNK+N+ + +KQE +DI+ETV+R Sbjct: 63 DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122 Query: 456 GARKGRGLVIAPKDYSTK 509 GAR+ +GLV++P DY+ K Sbjct: 123 GARRNKGLVVSPYDYNYK 140
>Q06819:DIB1_YEAST Spliceosomal protein DIB1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 143 Score = 186 bits (473), Expect = 6e-47 Identities = 87/138 (63%), Positives = 109/138 (78%) Frame = +3 Query: 96 SYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLV 275 S LLP L +GW VDQAI+ E +RLV+IRFG D CM MDE+LS +AE ++NFAVIYL Sbjct: 3 SVLLPQLRTGWHVDQAIVTETKRLVVIRFGRKNDRQCMIMDELLSSIAERVRNFAVIYLC 62 Query: 276 DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVYR 455 DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGNNNK+N+ + DKQE +DI+ET++R Sbjct: 63 DIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNNKLNFIVDDKQEMIDILETIFR 122 Query: 456 GARKGRGLVIAPKDYSTK 509 GARK +GLV++P DY+ K Sbjct: 123 GARKNKGLVVSPYDYNHK 140
>Q6FMI2:DIB1_CANGA Spliceosomal protein DIB1 - Candida glabrata (Yeast) (Torulopsis| glabrata) Length = 142 Score = 181 bits (460), Expect = 2e-45 Identities = 83/135 (61%), Positives = 106/135 (78%) Frame = +3 Query: 105 LPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLVDIT 284 L +LHSGW VDQAI+ EEERLV++RFG D CM MDE+L+ VAE ++NF IYL DI Sbjct: 4 LYNLHSGWHVDQAIVTEEERLVVVRFGRTADRECMLMDEMLASVAEKVRNFVAIYLCDID 63 Query: 285 EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVYRGAR 464 EVPDFN MYEL D +MFF++NKH+M D GTGNNNK+N+ DKQE +DI+ET++RGAR Sbjct: 64 EVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNNKMNFLPDDKQELIDIMETIFRGAR 123 Query: 465 KGRGLVIAPKDYSTK 509 K +G+V++P DY+ K Sbjct: 124 KNKGIVVSPYDYNHK 138
>Q9NX01:TXN4B_HUMAN Thioredoxin-like protein 4B - Homo sapiens (Human)| Length = 149 Score = 114 bits (285), Expect = 4e-25 Identities = 55/136 (40%), Positives = 90/136 (66%), Gaps = 1/136 (0%) Frame = +3 Query: 93 MSYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYL 272 MS+LLP L S VDQAI + E+++++RFG D D C+Q+D++LS + + A IYL Sbjct: 1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60 Query: 273 VDITEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETV 449 VD+ + + +++ Y PSTV FFF +H+ +D G+ ++ K + K KQ+F+D++E + Sbjct: 61 VDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 Query: 450 YRGARKGRGLVIAPKD 497 YRGA +G+ +V +P D Sbjct: 120 YRGAMRGKLIVQSPID 135
>Q8BUH1:TXN4B_MOUSE Thioredoxin-like protein 4B - Mus musculus (Mouse)| Length = 149 Score = 109 bits (272), Expect = 1e-23 Identities = 56/143 (39%), Positives = 89/143 (62%), Gaps = 1/143 (0%) Frame = +3 Query: 93 MSYLLPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYL 272 MS+LLP L S VDQAI + E+ +++RFG D D C+Q+D++LS + + A IYL Sbjct: 1 MSFLLPKLTSKKEVDQAIKSTAEKGLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYL 60 Query: 273 VDITEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETV 449 D+ P + +++ Y PSTV FFF +H+ D G+ ++ K + K KQ+F+D++E + Sbjct: 61 GDVDHTPVYTQYFDISYIPSTV-FFFNGQHMKGDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 Query: 450 YRGARKGRGLVIAPKDYSTKYRY 518 YRGA +G+ +V +P D +Y Sbjct: 120 YRGAMRGKLIVQSPIDPKNVPKY 142
>Q8IFW4:THIOT_DROME Thioredoxin-T - Drosophila melanogaster (Fruit fly)| Length = 157 Score = 35.0 bits (79), Expect = 0.31 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +3 Query: 132 VDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLVDITEVPDFNTMY 311 +DQ ++ E++LV+I F DW C + L +A + V+ V++ E D Y Sbjct: 11 LDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEY 70 Query: 312 ELYDPSTVMF 341 + T +F Sbjct: 71 NVNSMPTFVF 80
>P07591:TRXM_SPIOL Thioredoxin M-type, chloroplast precursor - Spinacia oleracea| (Spinach) Length = 181 Score = 34.3 bits (77), Expect = 0.52 Identities = 20/75 (26%), Positives = 32/75 (42%) Frame = +3 Query: 120 SGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLVDITEVPDF 299 S W + + E E VM+ F W C + V+ +A+ +Y ++ E P Sbjct: 82 SSW---KEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 138 Query: 300 NTMYELYDPSTVMFF 344 T Y + TV+FF Sbjct: 139 ATQYNIRSIPTVLFF 153
>O65572:CCD1_ARATH Carotenoid cleavage dioxygenase 1 - Arabidopsis thaliana (Mouse-ear| cress) Length = 538 Score = 33.1 bits (74), Expect = 1.2 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 9/99 (9%) Frame = -3 Query: 368 NHDVLVAEEEHDRRRVVQLVHGVEVGDLGDVDKVDHRKVLYCLSHP*QHLVHLHARLVPV 189 +H L+A +E D+ V++++ E GDL + +D+ K L H H ++ PV Sbjct: 179 HHGKLLALQEADKPYVIKVL---EDGDLQTLGIIDYDKRL-------THSFTAHPKVDPV 228 Query: 188 VAEA-----DHDQPLL----LGEDGLVHRPARVKVREQV 99 E H P L + +DG++H P + + E + Sbjct: 229 TGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPI 267
>A2RT91:ANKAR_MOUSE Ankyrin and armadillo repeat-containing protein - Mus musculus| (Mouse) Length = 1465 Score = 32.3 bits (72), Expect = 2.0 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = +3 Query: 177 RFGHDWDETCMQMDEVLSGVAETIKN----FAVIYLVDITEVPDFNTMYE 314 RF W T M +D L G +T KN F+ LVDIT PDFN +Y+ Sbjct: 170 RFSELW-RTIMDID--LDGKPQTTKNVFSEFSSAGLVDITNDPDFNGIYD 216
>Q89AG5:YHIT_BUCBP Uncharacterized HIT-like protein bbp_327 - Buchnera aphidicola| subsp. Baizongia pistaciae Length = 112 Score = 31.6 bits (70), Expect = 3.4 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Frame = -3 Query: 512 VFGGVILGSNHQTTALTSSPVDSLHDVNKLLLVFHCPV-DLVVVSCPEINHDVLVAEEEH 336 +F +I G + + HD+N + + V +L++ S EIN E+ Sbjct: 5 IFQKIIKGIIPSKIIYQDKEITAFHDINPIAPIHILVVPNLLIKSLNEIN--------EN 56 Query: 335 DRRRVVQLVH-GVEVGDLGDVDKVDHRKVLYCLSHP*QHLVHLHARLV 195 ++ + +++ +++ +DK +R ++ C H Q + HLH L+ Sbjct: 57 NKHILGNMLYISIKIAKKFKIDKNGYRLIINCNQHGRQEIQHLHLHLL 104
>Q9R6P9:THIO_MYCGA Thioredoxin - Mycoplasma gallisepticum| Length = 100 Score = 31.6 bits (70), Expect = 3.4 Identities = 23/103 (22%), Positives = 48/103 (46%) Frame = +3 Query: 105 LPHLHSGWAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLVDIT 284 + H+ + +DQ L + V++ F +W C + + VA+ K++ + VD+ Sbjct: 1 MKHITNKAELDQ--LLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVK-VDVD 57 Query: 285 EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMK 413 + + ++ YE+ TV+FF K +G N++ +K Sbjct: 58 QANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELLK 100
>Q73TS2:PPCK_MYCPA Phosphoenolpyruvate carboxykinase [GTP] - Mycobacterium| paratuberculosis Length = 609 Score = 31.2 bits (69), Expect = 4.4 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 3/131 (2%) Frame = +3 Query: 108 PHLHSG---WAVDQAILAEEERLVMIRFGHDWDETCMQMDEVLSGVAETIKNFAVIYLVD 278 P H G W + A L + +R+V G D + + + V +G L Sbjct: 13 PTNHQGLLSWVQEVAELTQPDRVVFAD-GSDEEFNRLAAELVEAGT-----------LKK 60 Query: 279 ITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFVDIVETVYRG 458 + E N+ L DPS V +I + +G NW D E I+ +YRG Sbjct: 61 LNEKKHPNSYLALSDPSDVARVESRTYICTEEESGAGPTNNWM--DPTEMRSIMTDLYRG 118 Query: 459 ARKGRGLVIAP 491 +GR + + P Sbjct: 119 CMRGRTMWVVP 129
>P02567:MYO1_CAEEL Myosin-1 - Caenorhabditis elegans| Length = 1938 Score = 31.2 bits (69), Expect = 4.4 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +3 Query: 375 GTGNNNKINWAMKDKQEFVDIVETVYRGARKGRGLVIAPKDYSTK 509 GT N +NW K+K D V +V + ++K LV +DY+T+ Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628
>Q07442:BDF2_YEAST Bromodomain-containing factor 2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 638 Score = 30.8 bits (68), Expect = 5.8 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 366 IDLGTGNNNKINWAMKDKQEFVDIVETVY 452 +DLGT +NN +NW K +FVD + V+ Sbjct: 367 MDLGTISNNLMNWKYKTIDQFVDDLNLVF 395
>P12845:MYO2_CAEEL Myosin-2 - Caenorhabditis elegans| Length = 1947 Score = 30.0 bits (66), Expect = 9.9 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 375 GTGNNNKINWAMKDKQEFVDIVETVYRGARKGRGLVIAPKDYSTK 509 GT N +NW K+K D V TV + +++ +V +DY+T+ Sbjct: 590 GTVRYNCLNWLEKNKDPLNDTVVTVMKASKEHALIVEVWQDYTTQ 634 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 123,268,150 Number of extensions: 2712418 Number of successful extensions: 6716 Number of sequences better than 10.0: 18 Number of HSP's gapped: 6712 Number of HSP's successfully gapped: 18 Length of query: 249 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 139 Effective length of database: 70,513,989 Effective search space: 9801444471 Effective search space used: 9801444471 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
