ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf126c23 |
|---|---|
| Clone Library Name | barley_pub |
>P87216:VIP1_SCHPO Protein vip1 - Schizosaccharomyces pombe (Fission yeast)| Length = 257 Score = 49.3 bits (116), Expect = 4e-05 Identities = 51/230 (22%), Positives = 92/230 (40%) Frame = +2 Query: 272 NISDLAGEREVREFFSFSGEIDHVDIRPDGVAAGRTAYVTFKDAKALEIALLLSGATIVD 451 NIS E+++ +FFSF G++ ++ G +TA + F+ A + ALLL A + Sbjct: 9 NISPEVTEKQISDFFSFCGKVSNISTEKSGET--QTAKIQFERPSATKTALLLQDALLGQ 66 Query: 452 RVVNITSAEDYIYIPVNEQQLVVNEVTSTAPTADLEQPTEANTSPTSVYASKAHDVMTTV 631 + ITS + T+ A +Q P S +++ + Sbjct: 67 NKIQITSEDGGA------------ASTTDQGGAGGDQAARQEDKPRSA-------IISEL 107 Query: 632 IARGSAIRQDAVNKAKSFDEKHQLRANASARISSFDRRVGLSEKLNTGISVVNEKVKTVD 811 ++RG + + K+ D+ + + + G+ E +G+ VNE+ + Sbjct: 108 LSRGYHLSDVTLEKSIQLDQSYGVSSKFK----------GILESALSGVRSVNERYHVTE 157 Query: 812 QRLHVSDKTMAALLAAERKLNDTGSAMKTNRYVSAGTSWLNGAFSKVAKA 961 + V +K A KLN T S + T + + T+ A KV A Sbjct: 158 KANEVDNK-----FAISDKLNRTSSLVSTYFHKALETAAGTSAGQKVQNA 202
>Q9JKL7:SFR12_RAT Splicing factor, arginine/serine-rich 12 - Rattus norvegicus (Rat)| Length = 494 Score = 37.4 bits (85), Expect = 0.15 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 1/143 (0%) Frame = +2 Query: 299 EVREFFSFSGEIDHVDIRPDGVAAGRTAYVTFKDAKALEIALLLSGATIVDRVVNITSAE 478 ++ EFF GE+ V + D R A+V F D ++ AL +G DR + I + Sbjct: 85 QLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSN 144 Query: 479 DYIYIPVNEQQLVVNEVTSTAPTADLEQPTE-ANTSPTSVYASKAHDVMTTVIARGSAIR 655 + I P E+T A +LE+ + + + + A+ + + +G R Sbjct: 145 NAIVKP--------PEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSR 196 Query: 656 QDAVNKAKSFDEKHQLRANASAR 724 +K++S + H R + ++ Sbjct: 197 SHTRSKSRSSSKSHSRRKRSQSK 219
>Q8BZX4:SFR12_MOUSE Splicing factor, arginine/serine-rich 12 - Mus musculus (Mouse)| Length = 494 Score = 37.4 bits (85), Expect = 0.15 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 1/143 (0%) Frame = +2 Query: 299 EVREFFSFSGEIDHVDIRPDGVAAGRTAYVTFKDAKALEIALLLSGATIVDRVVNITSAE 478 ++ EFF GE+ V + D R A+V F D ++ AL +G DR + I + Sbjct: 85 QLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSN 144 Query: 479 DYIYIPVNEQQLVVNEVTSTAPTADLEQPTE-ANTSPTSVYASKAHDVMTTVIARGSAIR 655 + I P E+T A +LE+ + + + + A+ + + +G R Sbjct: 145 NAIVKP--------PEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSR 196 Query: 656 QDAVNKAKSFDEKHQLRANASAR 724 +K++S + H R + ++ Sbjct: 197 SHTRSKSRSSSKSHSRRKRSQSK 219
>Q8WXA9:SFR12_HUMAN Splicing factor, arginine/serine-rich 12 - Homo sapiens (Human)| Length = 508 Score = 37.4 bits (85), Expect = 0.15 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 1/143 (0%) Frame = +2 Query: 299 EVREFFSFSGEIDHVDIRPDGVAAGRTAYVTFKDAKALEIALLLSGATIVDRVVNITSAE 478 ++ EFF GE+ V + D R A+V F D ++ AL +G DR + I + Sbjct: 82 QLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSN 141 Query: 479 DYIYIPVNEQQLVVNEVTSTAPTADLEQPTE-ANTSPTSVYASKAHDVMTTVIARGSAIR 655 + I P E+T A +LE+ + + + + A+ + + +G R Sbjct: 142 NAIVKP--------PEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSR 193 Query: 656 QDAVNKAKSFDEKHQLRANASAR 724 +K++S + H R + ++ Sbjct: 194 SHTRSKSRSSSKSHSRRKRSQSK 216
>O42874:STU1_SCHPO Protein peg1 - Schizosaccharomyces pombe (Fission yeast)| Length = 1462 Score = 34.7 bits (78), Expect = 0.96 Identities = 36/148 (24%), Positives = 64/148 (43%) Frame = +2 Query: 464 ITSAEDYIYIPVNEQQLVVNEVTSTAPTADLEQPTEANTSPTSVYASKAHDVMTTVIARG 643 I + DY+ P+N+ L +E+ + +E P SP S HD+ Sbjct: 1123 IYNNRDYMNTPMNDFSLSFSEIKGGILESPVESPMTGTISPIDADESVLHDIPA------ 1176 Query: 644 SAIRQDAVNKAKSFDEKHQLRANASARISSFDRRVGLSEKLNTGISVVNEKVKTVDQRLH 823 +++NK++S K+Q +A ++ + + L+ + N VD+ L Sbjct: 1177 ----YESLNKSES--NKYQEQAYSTPLHHTLNVLPKNKWILSRMHKMENGSPINVDKNL- 1229 Query: 824 VSDKTMAALLAAERKLNDTGSAMKTNRY 907 D +AAL AA ++LND KT ++ Sbjct: 1230 --DDAVAALEAAVKELNDGSVNTKTLKF 1255
>Q9VFP2:RDX_DROME Protein roadkill - Drosophila melanogaster (Fruit fly)| Length = 829 Score = 34.3 bits (77), Expect = 1.3 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 370 GEDGLRHLQGRQGPGDRAAALGSNNCGSSCEHN 468 G L+H+ R P ++A+ SNNC S+C N Sbjct: 197 GSSNLQHILTRSAPSPSSSAISSNNCSSACAGN 229
>Q05519:SFR11_HUMAN Splicing factor arginine/serine-rich 11 - Homo sapiens (Human)| Length = 484 Score = 33.9 bits (76), Expect = 1.6 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +2 Query: 272 NISDLAGEREVREFFSFSGEIDHVDIRPDG----VAAGRTAYVTFKDAKALEIALLLSGA 439 N+S A ++R F F G+ID + + P + R +V F D + +A L+ Sbjct: 39 NVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNT 98 Query: 440 TIVDRVV 460 VDR + Sbjct: 99 VFVDRAL 105
>Q6C2Q7:NOP12_YARLI Nucleolar protein 12 - Yarrowia lipolytica (Candida lipolytica)| Length = 509 Score = 33.5 bits (75), Expect = 2.1 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = +2 Query: 293 EREVREFFSFSGEIDHVDIRPD---GVAAGRTAYVTFKDAKALEIALLLSGATI 445 E + E FS G++++V I D V G AYV FKD ++E ALLL+G I Sbjct: 287 EESLWEAFSSCGDVEYVRIVRDPKTNVGKG-FAYVQFKDVNSVEQALLLNGKGI 339
>Q8R3N1:NOP14_MOUSE Nucleolar protein 14 - Mus musculus (Mouse)| Length = 860 Score = 32.7 bits (73), Expect = 3.7 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 15/161 (9%) Frame = +2 Query: 539 APTADLEQPTEANTSPTSVYASKA----------HDVMTTVIARGSAIRQDAVNKAKSFD 688 APT P + N +P V ++ HDV ++R AIR+ K + Sbjct: 16 APTGASGGPAKTNPNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYK 75 Query: 689 EKHQLRANASARISSFDRRVGLSEKLNTGISVVNEKVKTVDQRLHVSDKTMAALLAAERK 868 E+++ A R ++ + EK+ ++ QR H +K L + + Sbjct: 76 ERNKSNVFADKRFGEYNSNISPEEKM-------MKRFALEQQRYH--EKKNIYNLNEDEE 126 Query: 869 LNDTGSAM----KTNRYVSAGTSWLN-GAFSKVAKASHVAG 976 L G ++ K N V + + + GA S ASH G Sbjct: 127 LTHYGQSLADIEKHNDIVDSDSDTEDRGALSAELTASHFGG 167
>P02805:MT1_SCYSE Metallothionein-1 - Scylla serrata (Mud crab)| Length = 58 Score = 32.7 bits (73), Expect = 3.7 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = +1 Query: 796 GENCGPKVTCF*QNNGCFAGCRAQAKRYRLCHENQQVCVCWNKLAEWCLQQGRQG*SCC 972 G C K C + GC GC+ + R C + C C NK E C + + SCC Sbjct: 2 GPCCNDKCVC--KEGGCKEGCQCTSCRCSPCEKCSSGCKCANK--EECSKTCSKACSCC 56
>P55949:MT1_CALSI Metallothionein-1B - Callinectes sapidus (Blue crab)| Length = 59 Score = 32.7 bits (73), Expect = 3.7 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = +1 Query: 796 GENCGPKVTCF*QNNGCFAGCRAQAKRYRLCHENQQVCVCWNKLAEWCLQQGRQG*SCC 972 G C K C Q GC AGC+ + R C + C C K E C + + SCC Sbjct: 3 GPCCNDKCVC--QEGGCKAGCQCTSCRCSPCQKCTSGCKCATK--EECSKTCTKPCSCC 57
>P16283:B3A3_MOUSE Anion exchange protein 3 - Mus musculus (Mouse)| Length = 1227 Score = 32.7 bits (73), Expect = 3.7 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +1 Query: 4 EPSREHSTAA----ERRQTHARHAITNRLPPAERSTKPYPTSTRH 126 +PSR +S H H ++ RLPP + +P PTS RH Sbjct: 61 KPSRSYSERDFEFHRHTSHHTHHPLSARLPPPHKLRRPPPTSARH 105
>O88799:ZAN_MOUSE Zonadhesin precursor - Mus musculus (Mouse)| Length = 5376 Score = 32.0 bits (71), Expect = 6.3 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = -2 Query: 667 HSILSNC*TPCDHSCHDIMSLAGINTSGACVGLS-GLFQICSRGCTCH----LIHHKLLF 503 HS+ +NC PC SC ++ G C G S + C GC C L ++K L Sbjct: 3540 HSLFTNCLPPCLPSC--------LDPDGLCKGASPKVPSTCKEGCICQSGYVLSNNKCLL 3591 Query: 502 INR 494 NR Sbjct: 3592 RNR 3594
>O01159:RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 - Caenorhabditis| elegans Length = 452 Score = 32.0 bits (71), Expect = 6.3 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = +2 Query: 272 NISDLAGEREVREFFSFSGEIDHVDIRPD--GVAAG---RTAYVTFKDAKALEIALLLSG 436 NIS A + F++ G+I + + P + A +TA++ F D + +E+A L+ Sbjct: 16 NISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEVAQHLTN 75 Query: 437 ATIVD 451 ++D Sbjct: 76 TVVID 80 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 210,529,533 Number of extensions: 4345975 Number of successful extensions: 13291 Number of sequences better than 10.0: 14 Number of HSP's gapped: 13269 Number of HSP's successfully gapped: 14 Length of query: 459 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 342 Effective length of database: 68,593,924 Effective search space: 23459122008 Effective search space used: 23459122008 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
