ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf128j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q99MT2:MSH4_MOUSE MutS protein homolog 4 - Mus musculus (Mouse) 30 4.0

>Q99MT2:MSH4_MOUSE MutS protein homolog 4 - Mus musculus (Mouse)|
          Length = 958
 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/69 (33%), Positives = 30/69 (43%)
 Frame = +3

Query: 36  KKASEVLC*RRRQRSKLPGWPQTWWKPSRELVSSCKLLASASRTSTRPMXXXXXXXXSQE 215
           +KA E+L   R++ + L   P+  W PSR      + LASASR ST           S  
Sbjct: 43  RKAGEML---RQEAASLSSSPR--WTPSRRDAPCGRTLASASRPSTEGAMADRSSSSSSS 97

Query: 216 KEQTSKPAS 242
               S P S
Sbjct: 98  PAPASAPGS 106


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 60,603,845
Number of extensions: 1062491
Number of successful extensions: 2642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 100,686,439
Length adjustment: 102
Effective length of query: 43
Effective length of database: 72,708,349
Effective search space: 3126459007
Effective search space used: 3126459007
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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