ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf123i05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001066681.1| Oryza sativa (japonica cultivar-group) Os07g0588800 (Os07g0588800) mRNA, complete cds Length = 1423 Score = 948 bits (478), Expect = 0.0 Identities = 814/926 (87%) Strand = Plus / Plus Query: 39 cgccatggaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtcaa 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 66 cgccatggaggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtcaa 125 Query: 99 ggttgacatgctagagattgagaaggccgtggacaaaattcaggggaatgttccaaaagt 158 ||| |||||| ||||| | ||||||| ||||||||||| || || |||||||||||||| Sbjct: 126 ggtcgacatgttagaggtcgagaaggtggtggacaaaatccaaggaaatgttccaaaagt 185 Query: 159 cgagtgggatttcgaaggaatccattactttgacaatggaccgctcactgtgcagtacct 218 || ||||| ||||||||||| || || |||||| |||| || |||||||| |||||||| Sbjct: 186 tgaatgggacttcgaaggaattcactattttgacgatggccccctcactgtccagtacct 245 Query: 219 cttcgtcttggatgcgctgaacttttgcttctggccagacaaggacttgacctatgacaa 278 ||||||| ||||||| |||||||| |||||||||||||| ||||| ||| ||||||| | Sbjct: 246 cttcgtcctggatgctctgaacttctgcttctggccagataaggatctgagctatgacca 305 Query: 279 tttggcttctggacttaagttagcattagagaaagataagtcagcacttgatgcagatcg 338 ||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||| Sbjct: 306 tttggcttctggactaaagttagccttagagaaagataagacagcccttgatgcagatcg 365 Query: 339 tctgaagaattatactggaccgcaacttcgagaactgctgaattggccacgcccactgcc 398 ||| ||| ||| ||||| || || || || |||||||||| ||||||||||||||||| Sbjct: 366 tctccagagttacactgggcctcagctccgccaactgctgaactggccacgcccactgcc 425 Query: 399 aattgaggaggaaagagtccgccttcttcatgaggttggtctggagcttgaaagaagctt 458 |||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||| Sbjct: 426 aattgaggaggaaagagtacggcttcttcatgaggttggtatggaacttgaaagaagctt 485 Query: 459 tggcggtgaggctgctaatcttgtgaagtctgcaggaaactctgctgcatctctaattga 518 ||| ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||| || Sbjct: 486 tggaggtgaagctgcaaatctagtgaagtctgctggaaactctgctgctactctaatcga 545 Query: 519 actgattacccgtcattttcctggctttcgagaccactcactttacaagggacaccaggt 578 ||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||||| Sbjct: 546 acttattacccgtcattttcctggttttcgggatcattcactttacaaaggacaccaggt 605 Query: 579 tttcctgtacaagcgggcccagatatttgttgctgatttgtggggtgctttcaaggggga 638 |||| |||| ||| | || |||||||||||||||||| ||||||||||||| ||||| | Sbjct: 606 tttcttgtataagagagctcagatatttgttgctgatctgtggggtgcttttaagggaca 665 Query: 639 aaactatggacagttcgacgacattaagtccatcaccatatttgccgactatattgtccc 698 ||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||| || Sbjct: 666 aaactatggcgagttccacgacatcaagtccatcaccatatttgcagactatattgttcc 725 Query: 699 tgctgtgctgagggagcttggcatactgaaatacgagtcgagcctatgttgctccatcga 758 |||||| ||||||||||||||||||||||||| | || | | ||| |||||| || || Sbjct: 726 tgctgtcttgagggagcttggcatactgaaatatggctccaacttatcttgctcaattga 785 Query: 759 ctcgaaccgcgagattgtgcccggaagcgaagaggaagtggagattcgtgcttgttctgt 818 |||| | | ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 786 ttcgagcagtgagattgtgcctggaagtgaagaggaagtggagattcgtgcttgttctgt 845 Query: 819 tcatgccgttgaaaaaatgagggagctcatcaacaaaaagtttgggaaacagcttctgag 878 ||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||| Sbjct: 846 atatgccgtggaaaaaatgagagagctcatcaacaagaagtttggaaagcagcttctgag 905 Query: 879 cattgacattgacctctggctctggtcggtaggcgttcagaacatggcgctgtctcatca 938 ||||||||| || || ||||||||||| |||||||||||||||||| |||| ||||| Sbjct: 906 cattgacatcgatctatggctctggtcatgtggcgttcagaacatggcgttgtcacatca 965 Query: 939 ccgcaccctctccatttactactgag 964 |||||||||||| || || ||||||| Sbjct: 966 ccgcaccctctcaatatattactgag 991
>dbj|AK103183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121K01, full insert sequence Length = 1424 Score = 948 bits (478), Expect = 0.0 Identities = 814/926 (87%) Strand = Plus / Plus Query: 39 cgccatggaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtcaa 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 67 cgccatggaggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtcaa 126 Query: 99 ggttgacatgctagagattgagaaggccgtggacaaaattcaggggaatgttccaaaagt 158 ||| |||||| ||||| | ||||||| ||||||||||| || || |||||||||||||| Sbjct: 127 ggtcgacatgttagaggtcgagaaggtggtggacaaaatccaaggaaatgttccaaaagt 186 Query: 159 cgagtgggatttcgaaggaatccattactttgacaatggaccgctcactgtgcagtacct 218 || ||||| ||||||||||| || || |||||| |||| || |||||||| |||||||| Sbjct: 187 tgaatgggacttcgaaggaattcactattttgacgatggccccctcactgtccagtacct 246 Query: 219 cttcgtcttggatgcgctgaacttttgcttctggccagacaaggacttgacctatgacaa 278 ||||||| ||||||| |||||||| |||||||||||||| ||||| ||| ||||||| | Sbjct: 247 cttcgtcctggatgctctgaacttctgcttctggccagataaggatctgagctatgacca 306 Query: 279 tttggcttctggacttaagttagcattagagaaagataagtcagcacttgatgcagatcg 338 ||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||| Sbjct: 307 tttggcttctggactaaagttagccttagagaaagataagacagcccttgatgcagatcg 366 Query: 339 tctgaagaattatactggaccgcaacttcgagaactgctgaattggccacgcccactgcc 398 ||| ||| ||| ||||| || || || || |||||||||| ||||||||||||||||| Sbjct: 367 tctccagagttacactgggcctcagctccgccaactgctgaactggccacgcccactgcc 426 Query: 399 aattgaggaggaaagagtccgccttcttcatgaggttggtctggagcttgaaagaagctt 458 |||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||| Sbjct: 427 aattgaggaggaaagagtacggcttcttcatgaggttggtatggaacttgaaagaagctt 486 Query: 459 tggcggtgaggctgctaatcttgtgaagtctgcaggaaactctgctgcatctctaattga 518 ||| ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||| || Sbjct: 487 tggaggtgaagctgcaaatctagtgaagtctgctggaaactctgctgctactctaatcga 546 Query: 519 actgattacccgtcattttcctggctttcgagaccactcactttacaagggacaccaggt 578 ||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||||| Sbjct: 547 acttattacccgtcattttcctggttttcgggatcattcactttacaaaggacaccaggt 606 Query: 579 tttcctgtacaagcgggcccagatatttgttgctgatttgtggggtgctttcaaggggga 638 |||| |||| ||| | || |||||||||||||||||| ||||||||||||| ||||| | Sbjct: 607 tttcttgtataagagagctcagatatttgttgctgatctgtggggtgcttttaagggaca 666 Query: 639 aaactatggacagttcgacgacattaagtccatcaccatatttgccgactatattgtccc 698 ||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||| || Sbjct: 667 aaactatggcgagttccacgacatcaagtccatcaccatatttgcagactatattgttcc 726 Query: 699 tgctgtgctgagggagcttggcatactgaaatacgagtcgagcctatgttgctccatcga 758 |||||| ||||||||||||||||||||||||| | || | | ||| |||||| || || Sbjct: 727 tgctgtcttgagggagcttggcatactgaaatatggctccaacttatcttgctcaattga 786 Query: 759 ctcgaaccgcgagattgtgcccggaagcgaagaggaagtggagattcgtgcttgttctgt 818 |||| | | ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 787 ttcgagcagtgagattgtgcctggaagtgaagaggaagtggagattcgtgcttgttctgt 846 Query: 819 tcatgccgttgaaaaaatgagggagctcatcaacaaaaagtttgggaaacagcttctgag 878 ||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||| Sbjct: 847 atatgccgtggaaaaaatgagagagctcatcaacaagaagtttggaaagcagcttctgag 906 Query: 879 cattgacattgacctctggctctggtcggtaggcgttcagaacatggcgctgtctcatca 938 ||||||||| || || ||||||||||| |||||||||||||||||| |||| ||||| Sbjct: 907 cattgacatcgatctatggctctggtcatgtggcgttcagaacatggcgttgtcacatca 966 Query: 939 ccgcaccctctccatttactactgag 964 |||||||||||| || || ||||||| Sbjct: 967 ccgcaccctctcaatatattactgag 992
>dbj|AK070635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058H18, full insert sequence Length = 1623 Score = 831 bits (419), Expect = 0.0 Identities = 740/847 (87%) Strand = Plus / Plus Query: 118 gagaaggccgtggacaaaattcaggggaatgttccaaaagtcgagtgggatttcgaagga 177 ||||||| ||||||||||| || || |||||||||||||| || ||||| ||||||||| Sbjct: 432 gagaaggtggtggacaaaatccaaggaaatgttccaaaagttgaatgggacttcgaagga 491 Query: 178 atccattactttgacaatggaccgctcactgtgcagtacctcttcgtcttggatgcgctg 237 || || || |||||| |||| || |||||||| ||||||||||||||| ||||||| ||| Sbjct: 492 attcactattttgacgatggccccctcactgtccagtacctcttcgtcctggatgctctg 551 Query: 238 aacttttgcttctggccagacaaggacttgacctatgacaatttggcttctggacttaag 297 ||||| |||||||||||||| ||||| ||| ||||||| |||||||||||||||| ||| Sbjct: 552 aacttctgcttctggccagataaggatctgagctatgaccatttggcttctggactaaag 611 Query: 298 ttagcattagagaaagataagtcagcacttgatgcagatcgtctgaagaattatactgga 357 ||||| ||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||| Sbjct: 612 ttagccttagagaaagataagacagcccttgatgcagatcgtctccagagttacactggg 671 Query: 358 ccgcaacttcgagaactgctgaattggccacgcccactgccaattgaggaggaaagagtc 417 || || || || |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 672 cctcagctccgccaactgctgaactggccacgcccactgccaattgaggaggaaagagta 731 Query: 418 cgccttcttcatgaggttggtctggagcttgaaagaagctttggcggtgaggctgctaat 477 || |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 732 cggcttcttcatgaggttggtatggaacttgaaagaagctttggaggtgaagctgcaaat 791 Query: 478 cttgtgaagtctgcaggaaactctgctgcatctctaattgaactgattacccgtcatttt 537 || ||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct: 792 ctagtgaagtctgctggaaactctgctgctactctaatcgaacttattacccgtcatttt 851 Query: 538 cctggctttcgagaccactcactttacaagggacaccaggttttcctgtacaagcgggcc 597 ||||| ||||| || || ||||||||||| ||||||||||||||| |||| ||| | || Sbjct: 852 cctggttttcgggatcattcactttacaaaggacaccaggttttcttgtataagagagct 911 Query: 598 cagatatttgttgctgatttgtggggtgctttcaagggggaaaactatggacagttcgac 657 |||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||| || Sbjct: 912 cagatatttgttgctgatctgtggggtgcttttaagggacaaaactatggcgagttccac 971 Query: 658 gacattaagtccatcaccatatttgccgactatattgtccctgctgtgctgagggagctt 717 ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct: 972 gacatcaagtccatcaccatatttgcagactatattgttcctgctgtcttgagggagctt 1031 Query: 718 ggcatactgaaatacgagtcgagcctatgttgctccatcgactcgaaccgcgagattgtg 777 |||||||||||||| | || | | ||| |||||| || || |||| | | ||||||||| Sbjct: 1032 ggcatactgaaatatggctccaacttatcttgctcaattgattcgagcagtgagattgtg 1091 Query: 778 cccggaagcgaagaggaagtggagattcgtgcttgttctgttcatgccgttgaaaaaatg 837 || ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 1092 cctggaagtgaagaggaagtggagattcgtgcttgttctgtatatgccgtggaaaaaatg 1151 Query: 838 agggagctcatcaacaaaaagtttgggaaacagcttctgagcattgacattgacctctgg 897 || |||||||||||||| |||||||| || |||||||||||||||||||| || || ||| Sbjct: 1152 agagagctcatcaacaagaagtttggaaagcagcttctgagcattgacatcgatctatgg 1211 Query: 898 ctctggtcggtaggcgttcagaacatggcgctgtctcatcaccgcaccctctccatttac 957 |||||||| |||||||||||||||||| |||| ||||||||||||||||| || || Sbjct: 1212 ctctggtcatgtggcgttcagaacatggcgttgtcacatcaccgcaccctctcaatatat 1271 Query: 958 tactgag 964 ||||||| Sbjct: 1272 tactgag 1278
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 309 bits (156), Expect = 1e-80 Identities = 270/308 (87%) Strand = Plus / Plus Query: 556 tcactttacaagggacaccaggttttcctgtacaagcgggcccagatatttgttgctgat 615 ||||||||||| ||||||||||||||| |||| ||| | || |||||||||||||||||| Sbjct: 23934987 tcactttacaaaggacaccaggttttcttgtataagagagctcagatatttgttgctgat 23935046 Query: 616 ttgtggggtgctttcaagggggaaaactatggacagttcgacgacattaagtccatcacc 675 ||||||||||||| ||||| |||||||||| ||||| ||||||| |||||||||||| Sbjct: 23935047 ctgtggggtgcttttaagggacaaaactatggcgagttccacgacatcaagtccatcacc 23935106 Query: 676 atatttgccgactatattgtccctgctgtgctgagggagcttggcatactgaaatacgag 735 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| | Sbjct: 23935107 atatttgcagactatattgttcctgctgtcttgagggagcttggcatactgaaatatggc 23935166 Query: 736 tcgagcctatgttgctccatcgactcgaaccgcgagattgtgcccggaagcgaagaggaa 795 || | | ||| |||||| || || |||| | | ||||||||||| ||||| ||||||||| Sbjct: 23935167 tccaacttatcttgctcaattgattcgagcagtgagattgtgcctggaagtgaagaggaa 23935226 Query: 796 gtggagattcgtgcttgttctgttcatgccgttgaaaaaatgagggagctcatcaacaaa 855 ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| Sbjct: 23935227 gtggagattcgtgcttgttctgtatatgccgtggaaaaaatgagagagctcatcaacaag 23935286 Query: 856 aagtttgg 863 |||||||| Sbjct: 23935287 aagtttgg 23935294 Score = 135 bits (68), Expect = 4e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 431 aggttggtctggagcttgaaagaagctttggcggtgaggctgctaatcttgtgaagtctg 490 |||||||| |||| ||||||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 23933811 aggttggtatggaacttgaaagaagctttggaggtgaagctgcaaatctagtgaagtctg 23933870 Query: 491 caggaaactctgctgcatctctaattgaactgattacccgtcattttcctgg 542 | |||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 23933871 ctggaaactctgctgctactctaatcgaacttattacccgtcattttcctgg 23933922 Score = 133 bits (67), Expect = 2e-27 Identities = 121/139 (87%) Strand = Plus / Plus Query: 118 gagaaggccgtggacaaaattcaggggaatgttccaaaagtcgagtgggatttcgaagga 177 ||||||| ||||||||||| || || |||||||||||||| || ||||| ||||||||| Sbjct: 23932411 gagaaggtggtggacaaaatccaaggaaatgttccaaaagttgaatgggacttcgaagga 23932470 Query: 178 atccattactttgacaatggaccgctcactgtgcagtacctcttcgtcttggatgcgctg 237 || || || |||||| |||| || |||||||| ||||||||||||||| ||||||| ||| Sbjct: 23932471 attcactattttgacgatggccccctcactgtccagtacctcttcgtcctggatgctctg 23932530 Query: 238 aacttttgcttctggccag 256 ||||| ||||||||||||| Sbjct: 23932531 aacttctgcttctggccag 23932549 Score = 123 bits (62), Expect = 2e-24 Identities = 68/70 (97%) Strand = Plus / Plus Query: 39 cgccatggaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtcaa 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 23931858 cgccatggaggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtcaa 23931917 Query: 99 ggttgacatg 108 ||| |||||| Sbjct: 23931918 ggtcgacatg 23931927 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 270 ctatgacaatttggcttctggacttaagttagcattagagaaagataagtcagcacttga 329 ||||||| |||||||||||||||| |||||||| ||||||||||||||| |||| ||||| Sbjct: 23932901 ctatgaccatttggcttctggactaaagttagccttagagaaagataagacagcccttga 23932960 Query: 330 tgcagatcgtct 341 |||||||||||| Sbjct: 23932961 tgcagatcgtct 23932972 Score = 103 bits (52), Expect = 1e-18 Identities = 61/64 (95%) Strand = Plus / Plus Query: 371 aactgctgaattggccacgcccactgccaattgaggaggaaagagtccgccttcttcatg 430 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 23933437 aactgctgaactggccacgcccactgccaattgaggaggaaagagtacggcttcttcatg 23933496 Query: 431 aggt 434 |||| Sbjct: 23933497 aggt 23933500 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 868 cagcttctgagcattgacattgacctctggctctggtcggtaggcgttcagaacatggcg 927 |||||||||||||||||||| || || ||||||||||| |||||||||||||||||| Sbjct: 23935835 cagcttctgagcattgacatcgatctatggctctggtcatgtggcgttcagaacatggcg 23935894 Query: 928 ctgtctcatcaccgcaccctctccatttactactgag 964 |||| ||||||||||||||||| || || ||||||| Sbjct: 23935895 ttgtcacatcaccgcaccctctcaatatattactgag 23935931
>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07 Length = 142850 Score = 309 bits (156), Expect = 1e-80 Identities = 270/308 (87%) Strand = Plus / Plus Query: 556 tcactttacaagggacaccaggttttcctgtacaagcgggcccagatatttgttgctgat 615 ||||||||||| ||||||||||||||| |||| ||| | || |||||||||||||||||| Sbjct: 89914 tcactttacaaaggacaccaggttttcttgtataagagagctcagatatttgttgctgat 89973 Query: 616 ttgtggggtgctttcaagggggaaaactatggacagttcgacgacattaagtccatcacc 675 ||||||||||||| ||||| |||||||||| ||||| ||||||| |||||||||||| Sbjct: 89974 ctgtggggtgcttttaagggacaaaactatggcgagttccacgacatcaagtccatcacc 90033 Query: 676 atatttgccgactatattgtccctgctgtgctgagggagcttggcatactgaaatacgag 735 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| | Sbjct: 90034 atatttgcagactatattgttcctgctgtcttgagggagcttggcatactgaaatatggc 90093 Query: 736 tcgagcctatgttgctccatcgactcgaaccgcgagattgtgcccggaagcgaagaggaa 795 || | | ||| |||||| || || |||| | | ||||||||||| ||||| ||||||||| Sbjct: 90094 tccaacttatcttgctcaattgattcgagcagtgagattgtgcctggaagtgaagaggaa 90153 Query: 796 gtggagattcgtgcttgttctgttcatgccgttgaaaaaatgagggagctcatcaacaaa 855 ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| Sbjct: 90154 gtggagattcgtgcttgttctgtatatgccgtggaaaaaatgagagagctcatcaacaag 90213 Query: 856 aagtttgg 863 |||||||| Sbjct: 90214 aagtttgg 90221 Score = 135 bits (68), Expect = 4e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 431 aggttggtctggagcttgaaagaagctttggcggtgaggctgctaatcttgtgaagtctg 490 |||||||| |||| ||||||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 88738 aggttggtatggaacttgaaagaagctttggaggtgaagctgcaaatctagtgaagtctg 88797 Query: 491 caggaaactctgctgcatctctaattgaactgattacccgtcattttcctgg 542 | |||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 88798 ctggaaactctgctgctactctaatcgaacttattacccgtcattttcctgg 88849 Score = 133 bits (67), Expect = 2e-27 Identities = 121/139 (87%) Strand = Plus / Plus Query: 118 gagaaggccgtggacaaaattcaggggaatgttccaaaagtcgagtgggatttcgaagga 177 ||||||| ||||||||||| || || |||||||||||||| || ||||| ||||||||| Sbjct: 87338 gagaaggtggtggacaaaatccaaggaaatgttccaaaagttgaatgggacttcgaagga 87397 Query: 178 atccattactttgacaatggaccgctcactgtgcagtacctcttcgtcttggatgcgctg 237 || || || |||||| |||| || |||||||| ||||||||||||||| ||||||| ||| Sbjct: 87398 attcactattttgacgatggccccctcactgtccagtacctcttcgtcctggatgctctg 87457 Query: 238 aacttttgcttctggccag 256 ||||| ||||||||||||| Sbjct: 87458 aacttctgcttctggccag 87476 Score = 123 bits (62), Expect = 2e-24 Identities = 68/70 (97%) Strand = Plus / Plus Query: 39 cgccatggaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtcaa 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 86785 cgccatggaggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtcaa 86844 Query: 99 ggttgacatg 108 ||| |||||| Sbjct: 86845 ggtcgacatg 86854 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 270 ctatgacaatttggcttctggacttaagttagcattagagaaagataagtcagcacttga 329 ||||||| |||||||||||||||| |||||||| ||||||||||||||| |||| ||||| Sbjct: 87828 ctatgaccatttggcttctggactaaagttagccttagagaaagataagacagcccttga 87887 Query: 330 tgcagatcgtct 341 |||||||||||| Sbjct: 87888 tgcagatcgtct 87899 Score = 103 bits (52), Expect = 1e-18 Identities = 61/64 (95%) Strand = Plus / Plus Query: 371 aactgctgaattggccacgcccactgccaattgaggaggaaagagtccgccttcttcatg 430 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 88364 aactgctgaactggccacgcccactgccaattgaggaggaaagagtacggcttcttcatg 88423 Query: 431 aggt 434 |||| Sbjct: 88424 aggt 88427 Score = 97.6 bits (49), Expect = 9e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 868 cagcttctgagcattgacattgacctctggctctggtcggtaggcgttcagaacatggcg 927 |||||||||||||||||||| || || ||||||||||| |||||||||||||||||| Sbjct: 90762 cagcttctgagcattgacatcgatctatggctctggtcatgtggcgttcagaacatggcg 90821 Query: 928 ctgtctcatcaccgcaccctctccatttactactgag 964 |||| ||||||||||||||||| || || ||||||| Sbjct: 90822 ttgtcacatcaccgcaccctctcaatatattactgag 90858
>gb|AY017807.1| Oryza sativa microsatellite MRG0132 containing (AG)X12, genomic sequence Length = 224 Score = 123 bits (62), Expect = 2e-24 Identities = 68/70 (97%) Strand = Plus / Minus Query: 39 cgccatggaggccgtgcgcgcgtcggcggcctgggtggccagccgctcctcccacgtcaa 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 203 cgccatggaggccgtgcgcgcgtcggcggcgtgggtggccagccgctcctcccacgtcaa 144 Query: 99 ggttgacatg 108 ||| |||||| Sbjct: 143 ggtcgacatg 134
>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE Length = 119528 Score = 75.8 bits (38), Expect = 3e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 149 ttccaaaagtcgagtgggatttcgaaggaatccattactttgacaatggaccgctcactg 208 |||| ||||| || |||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct: 46849 ttccgaaagttgaatgggattttgaagggattcattattttgataatggtcctctcactg 46790 Query: 209 tgcagtacctcttcgtcttggatgcgctgaacttttgcttctggcc 254 | |||||| | || || |||||||| ||||||||||||||||||| Sbjct: 46789 ttcagtacttgtttgttttggatgctttgaacttttgcttctggcc 46744
>gb|AC113416.2| Homo sapiens chromosome 5 clone RP11-560F8, complete sequence Length = 190848 Score = 50.1 bits (25), Expect = 0.018 Identities = 28/29 (96%) Strand = Plus / Minus Query: 947 tctccatttactactgaggctacgccagc 975 |||||||||||||||||||||| |||||| Sbjct: 10861 tctccatttactactgaggctatgccagc 10833
>gb|AC113380.2| Homo sapiens chromosome 5 clone RP11-304B20, complete sequence Length = 143534 Score = 50.1 bits (25), Expect = 0.018 Identities = 28/29 (96%) Strand = Plus / Plus Query: 947 tctccatttactactgaggctacgccagc 975 |||||||||||||||||||||| |||||| Sbjct: 31704 tctccatttactactgaggctatgccagc 31732
>ref|NM_001061515.1| Oryza sativa (japonica cultivar-group) Os05g0231900 (Os05g0231900) mRNA, complete cds Length = 927 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 gccgtgcgcgcgtcggcggcct 70 |||||||||||||||||||||| Sbjct: 785 gccgtgcgcgcgtcggcggcct 764
>tpe|BN000602.1| TPA_inf: Oryza sativa (japonica cultivar-group) prx73 gene for class III peroxidase 73 precursor, exons 1-2 Length = 1433 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 gccgtgcgcgcgtcggcggcct 70 |||||||||||||||||||||| Sbjct: 1291 gccgtgcgcgcgtcggcggcct 1270
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complete sequence Length = 162959 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 gccgtgcgcgcgtcggcggcct 70 |||||||||||||||||||||| Sbjct: 90372 gccgtgcgcgcgtcggcggcct 90393
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 gccgtgcgcgcgtcggcggcct 70 |||||||||||||||||||||| Sbjct: 7905597 gccgtgcgcgcgtcggcggcct 7905618
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 56 gcgcgtcggcggcctgggtggccagccgctcct 88 ||||||||||| |||||| || ||||||||||| Sbjct: 5044940 gcgcgtcggcgacctgggcggtcagccgctcct 5044972
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 ggcggcctgggtggccagccgctcc 87 ||||||||||| ||||||||||||| Sbjct: 339963 ggcggcctgggcggccagccgctcc 339939
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 ggcggcctgggtggccagccgctcc 87 ||||||||||| ||||||||||||| Sbjct: 132356 ggcggcctgggcggccagccgctcc 132332
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 ggcggcctgggtggccagccgctcc 87 ||||||||||| ||||||||||||| Sbjct: 173147 ggcggcctgggcggccagccgctcc 173123
>gb|AF312688.1|AF312688 Mycobacterium celatum plasmid pCLP, complete sequence Length = 22688 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 gcgcgtcggcggcctgggtggccag 80 |||||||||||||||||| |||||| Sbjct: 9417 gcgcgtcggcggcctggggggccag 9441
>emb|CT010462.5| Mouse DNA sequence from clone RP23-321N21 on chromosome 12, complete sequence Length = 204912 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 441 ggagcttgaaagaagctttgg 461 ||||||||||||||||||||| Sbjct: 105036 ggagcttgaaagaagctttgg 105016
>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete sequence Length = 220679 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 caattgaggaggaaagagtcc 418 ||||||||||||||||||||| Sbjct: 56438 caattgaggaggaaagagtcc 56418 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 201,044,374 Number of extensions: 10278770 Number of successful extensions: 191808 Number of sequences better than 10.0: 20 Number of HSP's gapped: 191798 Number of HSP's successfully gapped: 32 Length of query: 1163 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1140 Effective length of database: 18,503,978,556 Effective search space: 21094535553840 Effective search space used: 21094535553840 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
