ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf123h01 |
|---|---|
| Clone Library Name | barley_pub |
>P87216:VIP1_SCHPO Protein vip1 - Schizosaccharomyces pombe (Fission yeast)| Length = 257 Score = 50.4 bits (119), Expect = 2e-05 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 7/173 (4%) Frame = +3 Query: 465 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGAT 644 V VTN+S +E + +FFSF G + +I +S G TA + F+ P A +TA+LL A Sbjct: 5 VIVTNISPEVTEKQISDFFSFCGKVSNISTEKS-GETQTAKIQFERPSATKTALLLQDAL 63 Query: 645 IVDQPVCISRWGQPDEPSNFWDRPTWQVEEEIEYRDYQSCQFNATPQEALTVAQDVVKTM 824 + GQ D ++ Q+ + P+ A ++ + Sbjct: 64 L----------GQNKIQITSEDGGAASTTDQGGAGGDQAARQEDKPRSA------IISEL 107 Query: 825 LSRGYILSKDALSRARAFDESHQLSG-------SAAAKAAELSRRLGLTDRVS 962 LSRGY LS L ++ D+S+ +S SA + ++ R +T++ + Sbjct: 108 LSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSGVRSVNERYHVTEKAN 160
>O13845:RSD1_SCHPO RNA-binding protein rsd1 - Schizosaccharomyces pombe (Fission| yeast) Length = 604 Score = 42.4 bits (98), Expect = 0.005 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Frame = +3 Query: 462 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIR---SGGYGSTAYVTFKEPYALETAVLL 632 TV V+ L++ + +L++FF +GP+ ++R SG AYV F +++ A+ L Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300 Query: 633 SGATIVDQPVCI 668 SG ++ PV + Sbjct: 301 SGKRLLGLPVIV 312
>O14369:SCE3_SCHPO Probable RNA-binding protein sce3 - Schizosaccharomyces pombe| (Fission yeast) Length = 388 Score = 38.9 bits (89), Expect = 0.053 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Frame = +3 Query: 441 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI------RSGGYGSTAYVTFKE 602 I S +T V NLS +ENDL +FF + I L+ RS G+G YV F+ Sbjct: 88 IPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFG---YVEFET 142 Query: 603 PYALETAVLLSGATIVDQPVCIS 671 L A+ LSG ++ +PV I+ Sbjct: 143 ADTLSAALALSGEDLMGRPVRIT 165
>P41891:GAR2_SCHPO Protein gar2 - Schizosaccharomyces pombe (Fission yeast)| Length = 500 Score = 34.7 bits (78), Expect = 1.0 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 462 TVEVTNLSSSASENDLHEFFSFSGPIEHIDL---IRSGGYGSTAYVTFKEPYALETAVLL 632 TV V NLS +A+E+DL F G I+ I L +SG YVTF + + + V + Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426 Query: 633 SGATIVDQP 659 +G I +P Sbjct: 427 NGHFIAGRP 435
>O01159:RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 - Caenorhabditis| elegans Length = 452 Score = 34.3 bits (77), Expect = 1.3 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Frame = +3 Query: 465 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGS------TAYVTFKEPYALETAV 626 + V N+S+SA+ + ++ F++ G I+ + + S G + TA++ F + +E A Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEVAQ 71 Query: 627 LLSGATIVDQPVCISRWGQ---PDEPSNF 704 L+ ++D + + PDE S F Sbjct: 72 HLTNTVVIDCAIVCLPYPNPVIPDEESFF 100
>O14327:PAB2_SCHPO Polyadenylate-binding protein 2 - Schizosaccharomyces pombe| (Fission yeast) Length = 166 Score = 34.3 bits (77), Expect = 1.3 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = +3 Query: 462 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIR---SGGYGSTAYVTFKEPYALETAVLL 632 +V V N+ S + +L F+ G + + ++ +G AY+ F EP + A+LL Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLL 115 Query: 633 SGATIVDQPVCIS 671 +G+ + ++P+ ++ Sbjct: 116 NGSMLHERPLKVT 128
>Q794E4:HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F - Rattus norvegicus (Rat)| Length = 415 Score = 33.9 bits (76), Expect = 1.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 441 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 283 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>Q9Z2X1:HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F - Mus musculus (Mouse)| Length = 415 Score = 33.9 bits (76), Expect = 1.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 441 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 283 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>Q60HC3:HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F - Macaca fascicularis| (Crab eating macaque) (Cynomolgus monkey) Length = 415 Score = 33.9 bits (76), Expect = 1.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 441 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 283 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>P52597:HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F - Homo sapiens (Human)| Length = 415 Score = 33.9 bits (76), Expect = 1.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 441 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 283 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>Q5E9J1:HNRPF_BOVIN Heterogeneous nuclear ribonucleoprotein F - Bos taurus (Bovine)| Length = 414 Score = 33.9 bits (76), Expect = 1.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 441 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 + S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 283 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>Q05519:SFR11_HUMAN Splicing factor arginine/serine-rich 11 - Homo sapiens (Human)| Length = 484 Score = 33.5 bits (75), Expect = 2.2 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 8/120 (6%) Frame = +3 Query: 357 GPRGAGGGTSPHSALCXXXXXXXXXXXXIMSGTGYTVEVTNLSSSASENDLHEFFSFSGP 536 GP G GGG G ++VTN+S SAS + F F G Sbjct: 18 GPGGGGGGGGG-------------------GGGTEVIQVTNVSPSASSEQMRTLFGFLGK 58 Query: 537 IEHIDLIRSGG-----YGSTAYVTFKEPYALETAVLLSGATIVDQPVCISRWGQ---PDE 692 I+ + L +V F +P + A L+ VD+ + + + + PDE Sbjct: 59 IDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDE 118
>Q6C2Q7:NOP12_YARLI Nucleolar protein 12 - Yarrowia lipolytica (Candida lipolytica)| Length = 509 Score = 33.1 bits (74), Expect = 2.9 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +3 Query: 465 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSG----GYGSTAYVTFKEPYALETAVLL 632 V V L E L E FS G +E++ ++R G G AYV FK+ ++E A+LL Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGF-AYVQFKDVNSVEQALLL 334 Query: 633 SGATI 647 +G I Sbjct: 335 NGKGI 339
>Q09167:SFRS5_RAT Splicing factor, arginine/serine-rich 5 - Rattus norvegicus (Rat)| Length = 269 Score = 32.7 bits (73), Expect = 3.8 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 453 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 629 +G V + L+ +A E D+ FF G I IDL R G+G +V F++P + AV Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56 Query: 630 LSGATIVDQPVCI 668 L G + + V I Sbjct: 57 LDGKELCSERVTI 69
>O35326:SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 - Mus musculus (Mouse)| Length = 270 Score = 32.7 bits (73), Expect = 3.8 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 453 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 629 +G V + L+ +A E D+ FF G I IDL R G+G +V F++P + AV Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56 Query: 630 LSGATIVDQPVCI 668 L G + + V I Sbjct: 57 LDGKELCSERVTI 69
>Q13243:SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 - Homo sapiens (Human)| Length = 272 Score = 32.7 bits (73), Expect = 3.8 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 453 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 629 +G V + L+ +A E D+ FF G I IDL R G+G +V F++P + AV Sbjct: 2 SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56 Query: 630 LSGATIVDQPVCI 668 L G + + V I Sbjct: 57 LDGKELCSERVTI 69
>P49960:PRP24_YEAST U4/U6 snRNA-associated-splicing factor PRP24 - Saccharomyces| cerevisiae (Baker's yeast) Length = 444 Score = 32.3 bits (72), Expect = 5.0 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3 Query: 462 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS 563 TV V NL S ++N ++++F GPI H+D+ S Sbjct: 42 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS 75
>O70489:PPT2_RAT Lysosomal thioesterase PPT2 precursor - Rattus norvegicus (Rat)| Length = 302 Score = 32.3 bits (72), Expect = 5.0 Identities = 21/79 (26%), Positives = 33/79 (41%) Frame = +3 Query: 480 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 659 L S E+++ F S S P + G YG T Y+ + P ++ + + Sbjct: 120 LLSVMDEHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163 Query: 660 VCISRWGQPDEPSNFWDRP 716 +C S WGQ N+W P Sbjct: 164 ICYSPWGQEFSICNYWHDP 182
>Q1JQA0:PPT2_BOVIN Lysosomal thioesterase PPT2 precursor - Bos taurus (Bovine)| Length = 305 Score = 32.3 bits (72), Expect = 5.0 Identities = 21/79 (26%), Positives = 33/79 (41%) Frame = +3 Query: 480 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 659 L S E+++ F S S P + G YG T Y+ + P ++ + + Sbjct: 123 LLSVMDEHNVDSFISLSSP-------QMGQYGDTNYLKWLFPTSMRSNLYR--------- 166 Query: 660 VCISRWGQPDEPSNFWDRP 716 +C S WGQ N+W P Sbjct: 167 ICYSPWGQEFSICNYWHDP 185
>O35737:HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H - Mus musculus (Mouse)| Length = 449 Score = 32.3 bits (72), Expect = 5.0 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 447 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>P31943:HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H - Homo sapiens (Human)| Length = 449 Score = 32.3 bits (72), Expect = 5.0 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 447 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 335
>Q9YGW7:DAZL_DANRE Deleted in azoospermia-like - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 229 Score = 32.3 bits (72), Expect = 5.0 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Frame = +3 Query: 453 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI--RSG---GYGSTAYVTFKEPYALE 617 T T+ V + EN++ EFF+ G ++ + +I R G GYG +V F E ++ Sbjct: 45 TPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYG---FVYFSEDVDIQ 101 Query: 618 TAVLLSGATIVDQPV 662 TIVDQP+ Sbjct: 102 --------TIVDQPI 108
>O88427:CAC1H_MOUSE Voltage-dependent T-type calcium channel subunit alpha-1H - Mus| musculus (Mouse) Length = 2365 Score = 32.0 bits (71), Expect = 6.5 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +1 Query: 13 HSHSTSTPNPRRQDPVPGGG-SRRARACLPAXXXXXXXXXXDARRLYSLF 159 H + S PRR P PG G +R RAC+P D+ ++S++ Sbjct: 528 HHYHFSHGGPRRPSPEPGAGDTRLVRACVPPSPPSPGHGPPDSESVHSIY 577
>Q9P2A4:ABI3_HUMAN ABI gene family member 3 - Homo sapiens (Human)| Length = 366 Score = 32.0 bits (71), Expect = 6.5 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 457 PVPLMIPPSRGLALPPSLQSAECGLVPPPAPRGPN 353 P+PL +PP PP L E GL PPP GP+ Sbjct: 272 PLPLDLPP------PPPLDGDELGLPPPPPGFGPD 300
>Q6AY09:HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H' - Rattus norvegicus| (Rat) Length = 449 Score = 31.6 bits (70), Expect = 8.5 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 447 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
>P70333:HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H' - Mus musculus (Mouse)| Length = 449 Score = 31.6 bits (70), Expect = 8.5 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 447 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
>P55795:HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H' - Homo sapiens (Human)| Length = 449 Score = 31.6 bits (70), Expect = 8.5 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 447 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
>Q3SZF3:HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H' - Bos taurus (Bovine)| Length = 449 Score = 31.6 bits (70), Expect = 8.5 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 447 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 596 S TG+ V + L A+END++ FFS P+ HI++ G A V F Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335
>Q9W2Q1:RX_DROME Retinal homeobox protein Rx - Drosophila melanogaster (Fruit fly)| Length = 873 Score = 31.6 bits (70), Expect = 8.5 Identities = 24/89 (26%), Positives = 35/89 (39%) Frame = -2 Query: 867 PWTMRPCSVCIPSTASSSRRPEPLSKPPVEWR*TGMIGSPYIQFPPRPAKLACPRNY*AH 688 P ++ P ++ + S A+ PP G G Q PP P P + +H Sbjct: 645 PLSLAPGNLTMSSLAAMGHHHAHNGPPPPH---VGHGGHGQPQPPPPPPPHGVPHPHGSH 701 Query: 687 QAVPNEICTPADPQW*PHSTILQFPRHRV 601 VP +P + PH+T L P H V Sbjct: 702 HVVPLSHLSPHLSRMSPHATSLGSPHHGV 730
>Q9EQ60:CAC1H_RAT Voltage-dependent T-type calcium channel subunit alpha-1H - Rattus| norvegicus (Rat) Length = 2359 Score = 31.6 bits (70), Expect = 8.5 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = +1 Query: 13 HSHSTSTPNPRRQDPVPGGGSRR-ARACLPAXXXXXXXXXXDARRLYSLF 159 H + S PRR P PG G R RAC P D+ ++S++ Sbjct: 528 HHYHFSHGGPRRPSPEPGAGDNRLVRACAPPSPPSPGHGPPDSESVHSIY 577 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 231,831,178 Number of extensions: 5002636 Number of successful extensions: 14831 Number of sequences better than 10.0: 30 Number of HSP's gapped: 14774 Number of HSP's successfully gapped: 30 Length of query: 473 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 356 Effective length of database: 68,593,924 Effective search space: 24419436944 Effective search space used: 24419436944 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
