Clone Information

BLAST Search Result

Clone Name	FLbaf123f16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001059220.1\| Oryza sativa (japonica cultivar-group) Os04g...	96	3e-16
2	dbj\|AK106153.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	3e-16
3	dbj\|AK070581.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	3e-16
4	ref\|NM_001059216.1\| Oryza sativa (japonica cultivar-group) Os04g...	88	8e-14
5	dbj\|AK072320.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	8e-14
6	ref\|NM_001059217.1\| Oryza sativa (japonica cultivar-group) Os04g...	84	1e-12
7	emb\|CT832475.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	78	8e-11
8	emb\|CR855104.1\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	66	3e-07
9	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	3e-07
10	emb\|AL731642.3\|OSJN00289 Oryza sativa genomic DNA, chromosome 4,...	66	3e-07
11	emb\|CT834716.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	62	5e-06
12	ref\|NM_001059218.1\| Oryza sativa (japonica cultivar-group) Os04g...	58	8e-05
13	emb\|CT833255.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	54	0.001
14	ref\|NM_001059219.1\| Oryza sativa (japonica cultivar-group) Os04g...	54	0.001
15	dbj\|AK110580.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	0.001
16	gb\|AC116913.6\| Homo sapiens chromosome 15, clone CTD-3185P2, com...	48	0.073
17	gb\|AC013564.7\| Homo sapiens chromosome 15, clone RP11-321F6, com...	48	0.073
18	gb\|AY283519.1\| Brassica napus CLV1-like receptor kinase (CLAVATA...	46	0.29
19	ref\|XM_001011938.1\| Tetrahymena thermophila SB210 hypothetical p...	44	1.1
20	emb\|CT832162.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	44	1.1
21	gb\|AC091309.13\| Mus musculus chromosome 17, clone RP23-127L4, co...	44	1.1
22	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	44	1.1
23	dbj\|AP007151.1\| Aspergillus oryzae RIB40 genomic DNA, SC005	44	1.1
24	emb\|CT835055.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	42	4.5
25	ref\|NM_001060090.1\| Oryza sativa (japonica cultivar-group) Os04g...	42	4.5
26	ref\|NM_001059221.1\| Oryza sativa (japonica cultivar-group) Os04g...	42	4.5
27	gb\|AC122393.3\| Mus musculus BAC clone RP24-83E21 from chromosome...	42	4.5
28	gb\|AC136913.7\| Mus musculus chromosome 15, clone RP23-315N11, co...	42	4.5
29	gb\|AY791399.1\| Gyrinocheilus sp. AMNH233433 cytochrome b (cytb) ...	42	4.5
30	emb\|AL606610.3\|OSJN00045 Oryza sativa genomic DNA, chromosome 4,...	42	4.5
31	emb\|AL606687.3\|OSJN00087 Oryza sativa genomic DNA, chromosome 4,...	42	4.5
32	dbj\|AK071517.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	4.5
33	dbj\|AK070790.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	4.5
34	dbj\|AK061279.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	4.5

>ref|NM_001059220.1| Oryza sativa (japonica cultivar-group) Os04g0401000 (Os04g0401000)
           mRNA, complete cds
          Length = 1007
 Score = 95.6 bits (48), Expect = 3e-16
 Identities = 159/196 (81%)
 Strand = Plus / Plus

                                                                       
Query: 60  ttgacagatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaa 119
           |||||||||||||||| |||| ||   ||| ||||||||||||||||||||| |    ||
Sbjct: 75  ttgacagatgggtatattggtcatcttggtggacctgcaatgctgccgctgcgatgccaa 134

                                                                       
Query: 120 gatcaagaatgtcctcgagtgcctccaagaggatttctgcatcgagaagattgagtacga 179
           ||||| ||| ||||| |  |||||  ||||||| | ||||||||||||| | ||||||||
Sbjct: 135 gatcaggaaggtcctgggctgccttgaagaggagtactgcatcgagaaggtggagtacga 194

                                                                       
Query: 180 ggacaaggacaatttggtgatcgtccgtgggaaattcgatgccgagaagctctgcaaaaa 239
            |  ||| ||||   ||||||||| || ||||| |||||  | |||||||| ||||| ||
Sbjct: 195 cgtgaagaacaacagggtgatcgtgcgcgggaagttcgacccggagaagctgtgcaagaa 254

                           
Query: 240 gatctggtgcaaggcc 255
           ||||||||||||||||
Sbjct: 255 gatctggtgcaaggcc 270



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 902 acgcctgctccatcatgtgatg 923
           ||||||||||||||||||||||
Sbjct: 695 acgcctgctccatcatgtgatg 716

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>dbj|AK106153.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A01, full
           insert sequence
          Length = 1007

 Score = 95.6 bits (48), Expect = 3e-16
 Identities = 159/196 (81%)
 Strand = Plus / Plus

                                                                       
Query: 60  ttgacagatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaa 119
           |||||||||||||||| |||| ||   ||| ||||||||||||||||||||| |    ||
Sbjct: 75  ttgacagatgggtatattggtcatcttggtggacctgcaatgctgccgctgcgatgccaa 134

                                                                       
Query: 120 gatcaagaatgtcctcgagtgcctccaagaggatttctgcatcgagaagattgagtacga 179
           ||||| ||| ||||| |  |||||  ||||||| | ||||||||||||| | ||||||||
Sbjct: 135 gatcaggaaggtcctgggctgccttgaagaggagtactgcatcgagaaggtggagtacga 194

                                                                       
Query: 180 ggacaaggacaatttggtgatcgtccgtgggaaattcgatgccgagaagctctgcaaaaa 239
            |  ||| ||||   ||||||||| || ||||| |||||  | |||||||| ||||| ||
Sbjct: 195 cgtgaagaacaacagggtgatcgtgcgcgggaagttcgacccggagaagctgtgcaagaa 254

                           
Query: 240 gatctggtgcaaggcc 255
           ||||||||||||||||
Sbjct: 255 gatctggtgcaaggcc 270



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 902 acgcctgctccatcatgtgatg 923
           ||||||||||||||||||||||
Sbjct: 695 acgcctgctccatcatgtgatg 716

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>dbj|AK070581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062P06, full
           insert sequence
          Length = 1109

 Score = 95.6 bits (48), Expect = 3e-16
 Identities = 159/196 (81%)
 Strand = Plus / Plus

                                                                       
Query: 60  ttgacagatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaa 119
           |||||||||||||||| |||| ||   ||| ||||||||||||||||||||| |    ||
Sbjct: 80  ttgacagatgggtatattggtcatcttggtggacctgcaatgctgccgctgcgatgccaa 139

                                                                       
Query: 120 gatcaagaatgtcctcgagtgcctccaagaggatttctgcatcgagaagattgagtacga 179
           ||||| ||| ||||| |  |||||  ||||||| | ||||||||||||| | ||||||||
Sbjct: 140 gatcaggaaggtcctgggctgccttgaagaggagtactgcatcgagaaggtggagtacga 199

                                                                       
Query: 180 ggacaaggacaatttggtgatcgtccgtgggaaattcgatgccgagaagctctgcaaaaa 239
            |  ||| ||||   ||||||||| || ||||| |||||  | |||||||| ||||| ||
Sbjct: 200 cgtgaagaacaacagggtgatcgtgcgcgggaagttcgacccggagaagctgtgcaagaa 259

                           
Query: 240 gatctggtgcaaggcc 255
           ||||||||||||||||
Sbjct: 260 gatctggtgcaaggcc 275



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 902 acgcctgctccatcatgtgatg 923
           ||||||||||||||||||||||
Sbjct: 868 acgcctgctccatcatgtgatg 889

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>ref|NM_001059216.1| Oryza sativa (japonica cultivar-group) Os04g0400000 (Os04g0400000)
           mRNA, complete cds
          Length = 648

 Score = 87.7 bits (44), Expect = 8e-14
 Identities = 149/184 (80%)
 Strand = Plus / Plus

                                                                       
Query: 72  tatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatcaagaatgt 131
           ||||||||| || |||||||||||| ||||||||||||||| |  ||| ||||  || ||
Sbjct: 12  tatactggtcatcacggtagacctgaaatgctgccgctgcagggcgaaaatcaccaaggt 71

                                                                       
Query: 132 cctcgagtgcctccaagaggatttctgcatcgagaagattgagtacgaggacaaggacaa 191
           ||| || |||||| ||||||| | ||||||||||||||  |||| |||||| |||||| |
Sbjct: 72  cctggactgcctcaaagaggagtactgcatcgagaagacggagttcgaggagaaggacga 131

                                                                       
Query: 192 tttggtgatcgtccgtgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaa 251
              ||||||||| || || || ||||| ||||  |  ||| |||| |||||||| |||||
Sbjct: 132 caaggtgatcgtgcgcggcaagttcgacgccggcagcctccgcaacaagatctgctgcaa 191

               
Query: 252 ggcc 255
           ||||
Sbjct: 192 ggcc 195

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>dbj|AK072320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029D20, full
           insert sequence
          Length = 1185

 Score = 87.7 bits (44), Expect = 8e-14
 Identities = 158/196 (80%)
 Strand = Plus / Plus

                                                                       
Query: 60  ttgacagatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaa 119
           |||||||||||||||| |||| ||   ||| ||||||||||||||||||||| |    ||
Sbjct: 83  ttgacagatgggtatattggtcatcttggtggacctgcaatgctgccgctgcgatgccaa 142

                                                                       
Query: 120 gatcaagaatgtcctcgagtgcctccaagaggatttctgcatcgagaagattgagtacga 179
           ||||| ||| ||||| |  |||||  ||||||| | ||||||||||||| | ||||||||
Sbjct: 143 gatcaggaaggtcctgggctgccttgaagaggagtactgcatcgagaaggtggagtacga 202

                                                                       
Query: 180 ggacaaggacaatttggtgatcgtccgtgggaaattcgatgccgagaagctctgcaaaaa 239
            |  ||| ||||   ||||||||| || ||| | |||||  | |||||||| ||||| ||
Sbjct: 203 cgtgaagaacaacagggtgatcgtgcgcggggagttcgacccggagaagctgtgcaagaa 262

                           
Query: 240 gatctggtgcaaggcc 255
           ||||||||||||||||
Sbjct: 263 gatctggtgcaaggcc 278



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 902 acgcctgctccatcatgtgatg 923
           ||||||||||||||||||||||
Sbjct: 870 acgcctgctccatcatgtgatg 891

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>ref|NM_001059217.1| Oryza sativa (japonica cultivar-group) Os04g0400500 (Os04g0400500)
           mRNA, complete cds
          Length = 642

 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 99/118 (83%)
 Strand = Plus / Plus

                                                                       
Query: 72  tatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatcaagaatgt 131
           ||||||||| || |||||||||||| ||||||||||||||| |  ||||||||  || ||
Sbjct: 30  tatactggtcatcacggtagacctgaaatgctgccgctgcagggcgaagatcaccaaggt 89

                                                                     
Query: 132 cctcgagtgcctccaagaggatttctgcatcgagaagattgagtacgaggacaaggac 189
           ||| || |||||| ||| ||| | ||||||||||||||  |||| |||||| ||||||
Sbjct: 90  cctggactgcctcaaagcggagtactgcatcgagaagacggagttcgaggaaaaggac 147

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>emb|CT832475.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN048A02, full
           insert sequence
          Length = 696

 Score = 77.8 bits (39), Expect = 8e-11
 Identities = 147/183 (80%)
 Strand = Plus / Plus

                                                                       
Query: 60  ttgacagatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaa 119
           |||||||||||||||| |||| ||  |||| ||||||||||||||||||||| |    ||
Sbjct: 77  ttgacagatgggtatattggtcatctcggtggacctgcaatgctgccgctgcgatgccaa 136

                                                                       
Query: 120 gatcaagaatgtcctcgagtgcctccaagaggatttctgcatcgagaagattgagtacga 179
           ||||| ||| ||||| |  |||||  ||||||| | ||||||||||||| | ||||||||
Sbjct: 137 gatcaggaaggtcctgggctgccttgaagaggagtactgcatcgagaaggtggagtacga 196

                                                                       
Query: 180 ggacaaggacaatttggtgatcgtccgtgggaaattcgatgccgagaagctctgcaaaaa 239
            |  ||| ||||   ||||||||| || ||||| |||||  | |||||||| ||||| ||
Sbjct: 197 cgtgaagaacaacagggtgatcgtgcgcgggaagttcgacccggagaagctgtgcaagaa 256

              
Query: 240 gat 242
           |||
Sbjct: 257 gat 259

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>emb|CR855104.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0113L04,
             complete sequence
          Length = 76727

 Score = 65.9 bits (33), Expect = 3e-07
 Identities = 90/109 (82%)
 Strand = Plus / Minus

                                                                         
Query: 147   agaggatttctgcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
             |||||| | ||||||||||||| | |||||||| |  ||| ||||   ||||||||| ||
Sbjct: 69735 agaggagtactgcatcgagaaggtggagtacgacgtgaagaacaacagggtgatcgtgcg 69676

                                                              
Query: 207   tgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaaggcc 255
              ||||| |||||  | |||||||| ||||| ||||||||||||||||||
Sbjct: 69675 cgggaagttcgacccggagaagctgtgcaagaagatctggtgcaaggcc 69627



 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 72    tatactggtgattacggtagacctgcaatgctgccgctgca 112
             ||||||||| || |||||||||||| |||||||||||||||
Sbjct: 32732 tatactggtcatcacggtagacctgaaatgctgccgctgca 32692



 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 72    tatactggtgattacggtagacctgcaatgctgccgctgca 112
             ||||||||| || |||||||||||| |||||||||||||||
Sbjct: 46003 tatactggtcatcacggtagacctgaaatgctgccgctgca 45963



 Score = 56.0 bits (28), Expect = 3e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 64    cagatgggtatactggtgattacggtagacctgcaatgctgccgctgc 111
             |||||||||||| |||| ||  |||| |||||||||||||||||||||
Sbjct: 69954 cagatgggtatattggtcatctcggtggacctgcaatgctgccgctgc 69907



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 66    gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
             ||||||||||||||| ||  |||  |||||| ||||||||||||||||| |||||
Sbjct: 61285 gatgggtatactggtcatctcggccgacctgaaatgctgccgctgcaaggagaag 61231



 Score = 52.0 bits (26), Expect = 0.005
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 66    gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
             ||||| |||||| ||||| |||||  || |||||||||||||||||||| | ||||||
Sbjct: 53709 gatggctatacttgtgatcacggtgaacatgcaatgctgccgctgcaaggacaagatc 53652



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 67    atgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
             |||| |||||| ||||| |||||  || |||||||||||||||||||  ||||||||
Sbjct: 56264 atggctatactcgtgatcacggttaacatgcaatgctgccgctgcaaagagaagatc 56208



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 158   gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
             ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 60915 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 60867



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 902   acgcctgctccatcatgtgatg 923
             ||||||||||||||||||||||
Sbjct: 69058 acgcctgctccatcatgtgatg 69037



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 87/109 (79%)
 Strand = Plus / Minus

                                                                         
Query: 147   agaggatttctgcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
             |||||| | ||||||||||||||  |||| |||||| |||||| |   ||||||||| ||
Sbjct: 32091 agaggagtactgcatcgagaagacggagttcgaggagaaggacgacaaggtgatcgtgcg 32032

                                                              
Query: 207   tgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaaggcc 255
              || || ||||| ||||  |  ||| |||| |||||||| |||||||||
Sbjct: 32031 cggcaagttcgacgccggcagcctccgcaacaagatctgctgcaaggcc 31983



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 157   tgcatcgagaagattgagtacgagg 181
             |||||||||||||| ||||||||||
Sbjct: 53493 tgcatcgagaagatcgagtacgagg 53469



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 157   tgcatcgagaagattgagtacgagg 181
             |||||||||||||| ||||||||||
Sbjct: 56023 tgcatcgagaagatcgagtacgagg 55999



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                         
Query: 214   ttcgatgccgagaagctctgcaaaaagatctggtgcaaggcctgtaaggccgtcaaggat 273
             ||||| ||||||||||||| |   ||| |||||||||||||| | |||  | ||||||| 
Sbjct: 75679 ttcgacgccgagaagctctcctgcaagctctggtgcaaggccggcaagatcatcaaggac 75620

                      
Query: 274   atcaagatc 282
             |||||||||
Sbjct: 75619 atcaagatc 75611



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 91    gacctgcaatgctgccgctgcaagaagaagatcaagaatgtcctc 135
             |||||||| |||||||||||||| |  |||||| |||| ||||||
Sbjct: 76120 gacctgcagtgctgccgctgcaacatcaagatccagaaagtcctc 76076

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 65.9 bits (33), Expect = 3e-07
 Identities = 90/109 (82%)
 Strand = Plus / Minus

                                                                            
Query: 147      agaggatttctgcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
                |||||| | ||||||||||||| | |||||||| |  ||| ||||   ||||||||| ||
Sbjct: 19844779 agaggagtactgcatcgagaaggtggagtacgacgtgaagaacaacagggtgatcgtgcg 19844720

                                                                 
Query: 207      tgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaaggcc 255
                 ||||| |||||  | |||||||| ||||| ||||||||||||||||||
Sbjct: 19844719 cgggaagttcgacccggagaagctgtgcaagaagatctggtgcaaggcc 19844671



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 66       gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
                ||||| |||||| ||||| |||||  || |||||||||||||||||||| ||||||||
Sbjct: 19828995 gatggctatacttgtgatcacggtgaacatgcaatgctgccgctgcaaggagaagatc 19828938



 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 72       tatactggtgattacggtagacctgcaatgctgccgctgca 112
                ||||||||| || |||||||||||| |||||||||||||||
Sbjct: 19806392 tatactggtcatcacggtagacctgaaatgctgccgctgca 19806352



 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 72       tatactggtgattacggtagacctgcaatgctgccgctgca 112
                ||||||||| || |||||||||||| |||||||||||||||
Sbjct: 19822552 tatactggtcatcacggtagacctgaaatgctgccgctgca 19822512



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 66       gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
                ||||||||||||||| ||  |||  |||||| ||||||||||||||||| |||||
Sbjct: 19836419 gatgggtatactggtcatctcggccgacctgaaatgctgccgctgcaaggagaag 19836365



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 67       atgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
                |||| |||||| ||||| |||||  || |||||||||||||||||||  ||||||||
Sbjct: 19831507 atggctatactcgtgatcacggttaacatgcaatgctgccgctgcaaagagaagatc 19831451



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                 
Query: 158      gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
                ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 19836041 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 19835993



 Score = 48.1 bits (24), Expect = 0.073
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 64       cagatgggtatactggtgattacggtagacctgcaatgctgccgctgc 111
                |||||||||||| |||| ||   ||| |||||||||||||||||||||
Sbjct: 19844998 cagatgggtatattggtcatcttggtggacctgcaatgctgccgctgc 19844951



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 902      acgcctgctccatcatgtgatg 923
                ||||||||||||||||||||||
Sbjct: 19844078 acgcctgctccatcatgtgatg 19844057



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 87/109 (79%)
 Strand = Plus / Minus

                                                                            
Query: 147      agaggatttctgcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
                |||||| | ||||||||||||||  |||| |||||| |||||| |   ||||||||| ||
Sbjct: 19805751 agaggagtactgcatcgagaagacggagttcgaggagaaggacgacaaggtgatcgtgcg 19805692

                                                                 
Query: 207      tgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaaggcc 255
                 || || ||||| ||||  |  ||| |||| |||||||| |||||||||
Sbjct: 19805691 cggcaagttcgacgccggcagcctccgcaacaagatctgctgcaaggcc 19805643



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 157      tgcatcgagaagattgagtacgagg 181
                |||||||||||||| ||||||||||
Sbjct: 19828762 tgcatcgagaagatcgagtacgagg 19828738



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 157      tgcatcgagaagattgagtacgagg 181
                |||||||||||||| ||||||||||
Sbjct: 19831267 tgcatcgagaagatcgagtacgagg 19831243



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 91       gacctgcaatgctgccgctgcaagaagaagatcaagaatgtcctc 135
                |||||||| |||||||||||||| |  |||||| |||| ||||||
Sbjct: 19851203 gacctgcagtgctgccgctgcaacatcaagatccagaaagtcctc 19851159



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 297      ggcgccaaagccgccggcggc 317
                |||||||||||||||||||||
Sbjct: 28102283 ggcgccaaagccgccggcggc 28102303

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>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23,
              complete sequence
          Length = 133759

 Score = 65.9 bits (33), Expect = 3e-07
 Identities = 90/109 (82%)
 Strand = Plus / Minus

                                                                          
Query: 147    agaggatttctgcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
              |||||| | ||||||||||||| | |||||||| |  ||| ||||   ||||||||| ||
Sbjct: 133241 agaggagtactgcatcgagaaggtggagtacgacgtgaagaacaacagggtgatcgtgcg 133182

                                                               
Query: 207    tgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaaggcc 255
               ||||| |||||  | |||||||| ||||| ||||||||||||||||||
Sbjct: 133181 cgggaagttcgacccggagaagctgtgcaagaagatctggtgcaaggcc 133133



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                        
Query: 66     gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
              ||||| |||||| ||||| |||||  || |||||||||||||||||||| ||||||||
Sbjct: 117457 gatggctatacttgtgatcacggtgaacatgcaatgctgccgctgcaaggagaagatc 117400



 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 72    tatactggtgattacggtagacctgcaatgctgccgctgca 112
             ||||||||| || |||||||||||| |||||||||||||||
Sbjct: 94854 tatactggtcatcacggtagacctgaaatgctgccgctgca 94814



 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 72     tatactggtgattacggtagacctgcaatgctgccgctgca 112
              ||||||||| || |||||||||||| |||||||||||||||
Sbjct: 111014 tatactggtcatcacggtagacctgaaatgctgccgctgca 110974



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 66     gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
              ||||||||||||||| ||  |||  |||||| ||||||||||||||||| |||||
Sbjct: 124881 gatgggtatactggtcatctcggccgacctgaaatgctgccgctgcaaggagaag 124827



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                       
Query: 67     atgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
              |||| |||||| ||||| |||||  || |||||||||||||||||||  ||||||||
Sbjct: 119969 atggctatactcgtgatcacggttaacatgcaatgctgccgctgcaaagagaagatc 119913



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 158    gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
              ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 124503 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 124455



 Score = 48.1 bits (24), Expect = 0.073
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 64     cagatgggtatactggtgattacggtagacctgcaatgctgccgctgc 111
              |||||||||||| |||| ||   ||| |||||||||||||||||||||
Sbjct: 133460 cagatgggtatattggtcatcttggtggacctgcaatgctgccgctgc 133413



 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 902    acgcctgctccatcatgtgatg 923
              ||||||||||||||||||||||
Sbjct: 132540 acgcctgctccatcatgtgatg 132519



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 87/109 (79%)
 Strand = Plus / Minus

                                                                         
Query: 147   agaggatttctgcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
             |||||| | ||||||||||||||  |||| |||||| |||||| |   ||||||||| ||
Sbjct: 94213 agaggagtactgcatcgagaagacggagttcgaggagaaggacgacaaggtgatcgtgcg 94154

                                                              
Query: 207   tgggaaattcgatgccgagaagctctgcaaaaagatctggtgcaaggcc 255
              || || ||||| ||||  |  ||| |||| |||||||| |||||||||
Sbjct: 94153 cggcaagttcgacgccggcagcctccgcaacaagatctgctgcaaggcc 94105



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 157    tgcatcgagaagattgagtacgagg 181
              |||||||||||||| ||||||||||
Sbjct: 117224 tgcatcgagaagatcgagtacgagg 117200



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 157    tgcatcgagaagattgagtacgagg 181
              |||||||||||||| ||||||||||
Sbjct: 119729 tgcatcgagaagatcgagtacgagg 119705

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>emb|CT834716.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115D21, full
           insert sequence
          Length = 1326

 Score = 61.9 bits (31), Expect = 5e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                  
Query: 66  gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
           ||||||||||||||| ||| |||  |||||| ||||||||||||||||| |||||
Sbjct: 39  gatgggtatactggtcatttcggccgacctgaaatgctgccgctgcaaggagaag 93



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 158 gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
           ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 131 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 179

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>ref|NM_001059218.1| Oryza sativa (japonica cultivar-group) Os04g0400600 (Os04g0400600)
           mRNA, complete cds
          Length = 678

 Score = 58.0 bits (29), Expect = 8e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 67  atgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaagatc 123
           |||| |||||| ||||| |||||  || |||||||||||||||||||| ||||||||
Sbjct: 1   atggctatacttgtgatcacggtgaacatgcaatgctgccgctgcaaggagaagatc 57



 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 157 tgcatcgagaagattgagtacgagg 181
           |||||||||||||| ||||||||||
Sbjct: 91  tgcatcgagaagatcgagtacgagg 115

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>emb|CT833255.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124A18, full
           insert sequence
          Length = 1596

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 66  gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
           ||||||||||||||| ||  |||  |||||| ||||||||||||||||| |||||
Sbjct: 40  gatgggtatactggtcatctcggccgacctgaaatgctgccgctgcaaggagaag 94



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 158 gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
           ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 410 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 458

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>ref|NM_001059219.1| Oryza sativa (japonica cultivar-group) Os04g0400800 (Os04g0400800)
           mRNA, complete cds
          Length = 1227

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 66  gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
           ||||||||||||||| ||  |||  |||||| ||||||||||||||||| |||||
Sbjct: 42  gatgggtatactggtcatctcggccgacctgaaatgctgccgctgcaaggagaag 96



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 158 gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
           ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 134 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 182

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>dbj|AK110580.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E08, full
           insert sequence
          Length = 1232

 Score = 54.0 bits (27), Expect = 0.001
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 66  gatgggtatactggtgattacggtagacctgcaatgctgccgctgcaagaagaag 120
           ||||||||||||||| ||  |||  |||||| ||||||||||||||||| |||||
Sbjct: 47  gatgggtatactggtcatctcggccgacctgaaatgctgccgctgcaaggagaag 101



 Score = 50.1 bits (25), Expect = 0.018
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 158 gcatcgagaagattgagtacgaggacaaggacaatttggtgatcgtccg 206
           ||||||||||||  |||||||||||||||||| |   ||||||||||||
Sbjct: 139 gcatcgagaagacggagtacgaggacaaggacgacagggtgatcgtccg 187

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>gb|AC116913.6| Homo sapiens chromosome 15, clone CTD-3185P2, complete sequence
          Length = 152561

 Score = 48.1 bits (24), Expect = 0.073
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 1143   attagtaagagcatcttttcatgt 1166
              ||||||||||||||||||||||||
Sbjct: 126591 attagtaagagcatcttttcatgt 126568

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>gb|AC013564.7| Homo sapiens chromosome 15, clone RP11-321F6, complete sequence
          Length = 210133

 Score = 48.1 bits (24), Expect = 0.073
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 1143   attagtaagagcatcttttcatgt 1166
              ||||||||||||||||||||||||
Sbjct: 203455 attagtaagagcatcttttcatgt 203478

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>gb|AY283519.1| Brassica napus CLV1-like receptor kinase (CLAVATA1) gene, partial cds
          Length = 3008

 Score = 46.1 bits (23), Expect = 0.29
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 130  gtcctcgagtgcctccaagagga 152
            |||||||||||||||||||||||
Sbjct: 2083 gtcctcgagtgcctccaagagga 2105

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>ref|XM_001011938.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00394660)
            mRNA, complete cds
          Length = 3471

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1074 tttatttgtgaatgtaatcatgttcg 1099
            ||||||||| ||||||||||||||||
Sbjct: 2950 tttatttgttaatgtaatcatgttcg 2925

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>emb|CT832162.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA013H11, full
           insert sequence
          Length = 877

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 902 acgcctgctccatcatgtgatg 923
           ||||||||||||||||||||||
Sbjct: 576 acgcctgctccatcatgtgatg 597

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>gb|AC091309.13| Mus musculus chromosome 17, clone RP23-127L4, complete sequence
          Length = 184755

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 650    accctatgcagtgccagagctc 671
              ||||||||||||||||||||||
Sbjct: 124287 accctatgcagtgccagagctc 124308

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 294     gccggcgccaaagccgccggcg 315
               ||||||||||||||||||||||
Sbjct: 2695717 gccggcgccaaagccgccggcg 2695738

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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 261     ggccgtcaaggatatcaagatc 282
               ||||||||||||||||||||||
Sbjct: 2737802 ggccgtcaaggatatcaagatc 2737781

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>emb|CT835055.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA043I07, full
           insert sequence
          Length = 1005

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 157 tgcatcgagaagattgagtacgagg 181
           |||||||||||||| ||||||||||
Sbjct: 64  tgcatcgagaagatcgagtacgagg 88

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>ref|NM_001060090.1| Oryza sativa (japonica cultivar-group) Os04g0561900 (Os04g0561900)
           mRNA, complete cds
          Length = 2015

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 297 ggcgccaaagccgccggcggc 317
           |||||||||||||||||||||
Sbjct: 515 ggcgccaaagccgccggcggc 495

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>ref|NM_001059221.1| Oryza sativa (japonica cultivar-group) Os04g0401100 (Os04g0401100)
           mRNA, complete cds
          Length = 922

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 91  gacctgcaatgctgccgctgcaagaagaagatcaagaatgtcctc 135
           |||||||| |||||||||||||| |  |||||| |||| ||||||
Sbjct: 178 gacctgcagtgctgccgctgcaacatcaagatccagaaagtcctc 222

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>gb|AC122393.3| Mus musculus BAC clone RP24-83E21 from chromosome 15, complete sequence
          Length = 223656

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    tgcctccaagaggatttctgc 159
              |||||||||||||||||||||
Sbjct: 116831 tgcctccaagaggatttctgc 116811

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>gb|AC136913.7| Mus musculus chromosome 15, clone RP23-315N11, complete sequence
          Length = 127286

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   tgcctccaagaggatttctgc 159
             |||||||||||||||||||||
Sbjct: 92278 tgcctccaagaggatttctgc 92258

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>gb|AY791399.1| Gyrinocheilus sp. AMNH233433 cytochrome b (cytb) gene, partial cds;
           mitochondrial
          Length = 1011

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 845 cgccgcagcaaccctgcttca 865
           |||||||||||||||||||||
Sbjct: 453 cgccgcagcaaccctgcttca 473

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>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08,
            complete sequence
          Length = 106975

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 91   gacctgcaatgctgccgctgcaagaagaagatcaagaatgtcctc 135
            |||||||| |||||||||||||| |  |||||| |||| ||||||
Sbjct: 6011 gacctgcagtgctgccgctgcaacatcaagatccagaaagtcctc 5967

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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
              complete sequence
          Length = 147806

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    ggcgccaaagccgccggcggc 317
              |||||||||||||||||||||
Sbjct: 109508 ggcgccaaagccgccggcggc 109528

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>dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A14, full
           insert sequence
          Length = 1977

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 297 ggcgccaaagccgccggcggc 317
           |||||||||||||||||||||
Sbjct: 523 ggcgccaaagccgccggcggc 503

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>dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067H20, full
           insert sequence
          Length = 2016

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 297 ggcgccaaagccgccggcggc 317
           |||||||||||||||||||||
Sbjct: 516 ggcgccaaagccgccggcggc 496

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>dbj|AK061279.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F04, full
           insert sequence
          Length = 923

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 91  gacctgcaatgctgccgctgcaagaagaagatcaagaatgtcctc 135
           |||||||| |||||||||||||| |  |||||| |||| ||||||
Sbjct: 178 gacctgcagtgctgccgctgcaacatcaagatccagaaagtcctc 222


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 168,801,904
Number of extensions: 8440103
Number of successful extensions: 166481
Number of sequences better than 10.0: 34
Number of HSP's gapped: 166469
Number of HSP's successfully gapped: 80
Length of query: 1182
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1159
Effective length of database: 18,503,978,556
Effective search space: 21446111146404
Effective search space used: 21446111146404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result