ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf118d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein ... 179 4e-44
2Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein ... 179 4e-44
3Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein ... 179 4e-44
4Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccha... 160 1e-38
5Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccha... 159 2e-38
6P10394:POL4_DROME Retrovirus-related Pol polyprotein from transp... 93 3e-18
7P27401:POL_SFV3L Pro-Pol polyprotein - Simian foamy virus type 3... 88 1e-16
8P23074:POL_SFV1 Pro-Pol polyprotein - Simian foamy virus type 1 ... 86 1e-16
9P31795:POL_MLVRK Pol polyprotein [Contains: Reverse transcriptas... 85 9e-16
10P11227:POL_MLVRD Pol polyprotein [Contains: Protease - Radiation... 85 9e-16
11P03356:POL_MLVAV Pol polyprotein [Contains: Protease - AKV murin... 83 4e-15
12P14350:POL_FOAMV Pro-Pol polyprotein - Human spumaretrovirus (SF... 79 7e-14
13P10272:POL_BAEVM Pol polyprotein [Contains: Protease - Baboon en... 78 9e-14
14P31792:POL_FENV1 Pol polyprotein [Contains: Reverse transcriptas... 77 1e-13
15P26808:POL_MLVFP Pol polyprotein [Contains: Protease - Friend mu... 76 3e-13
16P26809:POL_MLVFF Pol polyprotein [Contains: Protease - Friend mu... 75 7e-13
17P26810:POL_MLVF5 Pol polyprotein [Contains: Protease - Friend mu... 74 1e-12
18Q9TTC1:POL_KORV Pro-Pol polyprotein - Koala retrovirus (KoRV) 74 2e-12
19P21414:POL_GALV Pol polyprotein [Contains: Protease - Gibbon ape... 72 6e-12
20O93209:POL_FFV Pro-Pol polyprotein - Feline foamy virus (FFV) (F... 72 6e-12
21P03355:POL_MLVMO Pol polyprotein [Contains: Protease - Moloney m... 72 8e-12
22P03360:POL_AVIRE Pol polyprotein [Contains: Reverse transcriptas... 68 1e-10
23P08361:POL_MLVCB Pol polyprotein [Contains: Reverse transcriptas... 67 2e-10
24P10401:POLY_DROME Retrovirus-related Pol polyprotein from transp... 66 3e-10
25Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabdit... 62 5e-09
26P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabdit... 61 1e-08
27P03359:POL_WMSV Pol polyprotein [Contains: Reverse transcriptase... 48 1e-04
28Q8I7P9:POL5_DROME Retrovirus-related Pol polyprotein from transp... 45 8e-04
29P24577:YI71_BURCE Insertion element IS407 uncharacterized 20.5 k... 44 0.002
30O75154:RFIP3_HUMAN Rab11 family-interacting protein 3 - Homo sap... 38 0.13
31P97305:NFAC3_MOUSE Nuclear factor of activated T-cells, cytoplas... 36 0.38
32Q8TD26:CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 - ... 35 0.64
33Q7Z2K8:GRIN1_HUMAN G protein-regulated inducer of neurite outgro... 35 1.1
34Q6DD51:CSKI2_XENLA Caskin-2 - Xenopus laevis (African clawed frog) 35 1.1
35P16103:POL_MCFF3 Pol polyprotein - Mink cell focus-forming murin... 34 1.4
36O88737:BSN_MOUSE Protein bassoon - Mus musculus (Mouse) 34 1.4
37Q9Y232:CDYL1_HUMAN Chromodomain Y-like protein - Homo sapiens (H... 34 1.4
38P04323:POL3_DROME Retrovirus-related Pol polyprotein from transp... 34 1.9
39Q32MK0:MYLK3_HUMAN Putative myosin light chain kinase 3 - Homo s... 34 1.9
40Q5RDG7:MYLK3_PONPY Putative myosin light chain kinase 3 - Pongo ... 33 2.4
41O60244:CRSP2_HUMAN CRSP complex subunit 2 - Homo sapiens (Human) 33 2.4
42O19012:ADA2B_ERIEU Alpha-2B adrenergic receptor - Erinaceus euro... 33 2.4
43Q9P2D1:CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 - ... 33 2.4
44P55389:Y4CG_RHISN Probable DNA-invertase y4cG - Rhizobium sp. (s... 33 4.2
45Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 -... 33 4.2
46Q12968:NFAC3_HUMAN Nuclear factor of activated T-cells, cytoplas... 33 4.2
47Q8IYF1:ELOA2_HUMAN RNA polymerase II transcription factor SIII s... 33 4.2
48P16230:SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-... 32 5.4
49P04585:POL_HV1H2 Gag-Pol polyprotein - Human immunodeficiency vi... 32 5.4
50P01045:KNG2_BOVIN Kininogen-2 precursor - Bos taurus (Bovine) 32 5.4
51Q96JH8:K1849_HUMAN Uncharacterized protein KIAA1849 - Homo sapie... 32 5.4
52Q8VHS5:ASB16_MOUSE Ankyrin repeat and SOCS box protein 16 - Mus ... 32 5.4
53P05205:HP1_DROME Heterochromatin protein 1 - Drosophila melanoga... 32 5.4
54Q9NRJ2:CI031_HUMAN Putative uncharacterized protein C9orf31 - Ho... 32 5.4
55Q9ULL5:PRR12_HUMAN Proline-rich protein 12 - Homo sapiens (Human) 32 7.1
56P20909:COBA1_RAT Collagen alpha-1(XI) chain precursor - Rattus n... 32 7.1
57Q9RDE2:TRI1_STRCO Tricorn protease homolog 1 - Streptomyces coel... 32 7.1
58O52547:RIFF_AMYMD 3-amino-5-hydroxybenzoic acid synthase - Amyco... 32 7.1
59Q06A37:CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 - ... 32 7.1
60Q12873:CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 - ... 32 7.1
61P60469:LIPA3_MOUSE Liprin-alpha-3 - Mus musculus (Mouse) 32 9.3
62P01044:KNG1_BOVIN Kininogen-1 precursor - Bos taurus (Bovine) 32 9.3
63Q9Y2K7:JHD1A_HUMAN JmjC domain-containing histone demethylation ... 32 9.3
64Q61245:COBA1_MOUSE Collagen alpha-1(XI) chain precursor - Mus mu... 32 9.3
65Q339W7:LHP1_ORYSJ Probable protein LIKE HETEROCHROMATIN PROTEIN1... 32 9.3
66A2AJK6:CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 - ... 32 9.3
67Q8VDS3:CBX7_MOUSE Chromobox protein homolog 7 - Mus musculus (Mo... 32 9.3
68O95931:CBX7_HUMAN Chromobox protein homolog 7 - Homo sapiens (Hu... 32 9.3 
>Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333
 Score =  179 bits (453), Expect = 4e-44
 Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 3/338 (0%)
 Frame = +2

Query: 38   HEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWAD 217
            H G++   + +   F   G    ++++V++C TCQ NK+   +P G LQP+    + W  
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986

Query: 218  ISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFSSS 397
            +SMDFI  LP+  G + +  VVDR S  A  +      T    AR F   ++   G    
Sbjct: 987  LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046

Query: 398  IVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRA 577
            I++D D +FT   W+D        ++ S  + PQTDGQ+E  N+ +   LRCV    P  
Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106

Query: 578  WVDWLAWAEYCYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTARSETAGDLLRTRDDIX 757
            WVD ++  +  YN + HSA + TPFE+V+ R  PA+ P E  +   +T  +   T   + 
Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVH-RYSPALSPLELPSFSDKTDENSQET-IQVF 1164

Query: 758  XXXXXXXXXXXXXXXKYYDAHHRE-AEFAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAG 934
                           KY+D   +E  EF  GD V ++     T++       KL P +AG
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKR----TKTGFLHKSNKLAPSFAG 1220

Query: 935  PFHVLERVGTLAYRLELPAGSRLHY--VFHVGLLKAYR 1042
            PF+VL++ G   Y L+LP   +  +   FHV  L+ YR
Sbjct: 1221 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYR 1258
to top
>Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score =  179 bits (453), Expect = 4e-44
 Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 3/338 (0%)
 Frame = +2

Query: 38   HEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWAD 217
            H G++   + +   F   G    ++++V++C TCQ NK+   +P G LQP+    + W  
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986

Query: 218  ISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFSSS 397
            +SMDFI  LP+  G + +  VVDR S  A  +      T    AR F   ++   G    
Sbjct: 987  LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046

Query: 398  IVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRA 577
            I++D D +FT   W+D        ++ S  + PQTDGQ+E  N+ +   LRCV    P  
Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106

Query: 578  WVDWLAWAEYCYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTARSETAGDLLRTRDDIX 757
            WVD ++  +  YN + HSA + TPFE+V+ R  PA+ P E  +   +T  +   T   + 
Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVH-RYSPALSPLELPSFSDKTDENSQET-IQVF 1164

Query: 758  XXXXXXXXXXXXXXXKYYDAHHRE-AEFAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAG 934
                           KY+D   +E  EF  GD V ++     T++       KL P +AG
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKR----TKTGFLHKSNKLAPSFAG 1220

Query: 935  PFHVLERVGTLAYRLELPAGSRLHY--VFHVGLLKAYR 1042
            PF+VL++ G   Y L+LP   +  +   FHV  L+ YR
Sbjct: 1221 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYR 1258
to top
>Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1 -|
            Schizosaccharomyces pombe (Fission yeast)
          Length = 1333

 Score =  179 bits (453), Expect = 4e-44
 Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 3/338 (0%)
 Frame = +2

Query: 38   HEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWAD 217
            H G++   + +   F   G    ++++V++C TCQ NK+   +P G LQP+    + W  
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986

Query: 218  ISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFSSS 397
            +SMDFI  LP+  G + +  VVDR S  A  +      T    AR F   ++   G    
Sbjct: 987  LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046

Query: 398  IVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRA 577
            I++D D +FT   W+D        ++ S  + PQTDGQ+E  N+ +   LRCV    P  
Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106

Query: 578  WVDWLAWAEYCYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTARSETAGDLLRTRDDIX 757
            WVD ++  +  YN + HSA + TPFE+V+ R  PA+ P E  +   +T  +   T   + 
Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVH-RYSPALSPLELPSFSDKTDENSQET-IQVF 1164

Query: 758  XXXXXXXXXXXXXXXKYYDAHHRE-AEFAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAG 934
                           KY+D   +E  EF  GD V ++     T++       KL P +AG
Sbjct: 1165 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKR----TKTGFLHKSNKLAPSFAG 1220

Query: 935  PFHVLERVGTLAYRLELPAGSRLHY--VFHVGLLKAYR 1042
            PF+VL++ G   Y L+LP   +  +   FHV  L+ YR
Sbjct: 1221 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYR 1258
to top
>Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1547

 Score =  160 bits (406), Expect = 1e-38
 Identities = 115/348 (33%), Positives = 164/348 (47%), Gaps = 7/348 (2%)
 Frame = +2

Query: 35   GHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWA 214
            GH GV  TL ++   +Y P     +  ++R+CV CQ  K+   R  GLLQPL +    W 
Sbjct: 1111 GHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWL 1170

Query: 215  DISMDFIEGLPKVGGK-SIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFS 391
            DISMDF+ GLP      ++IL VVDR S  AHFIA         +    F  I   HGF 
Sbjct: 1171 DISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFP 1230

Query: 392  SSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRP 571
             +I SDRD   T   +++L +  G+K  MS+A HPQTDGQSE   + +   LR       
Sbjct: 1231 RTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNI 1290

Query: 572  RAWVDWLAWAEYCYNTSYHSALRTTPFEVVYGRPP--PAMLPYEPGTARSETAGDLLRTR 745
            + W  +L   E+ YN++    L  +PFE+  G  P  PA+   +   ARS TA +L +  
Sbjct: 1291 QNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHL 1350

Query: 746  DDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQSPDPRSKR----K 913
              +                   +   +     +GD V   L+HR     D   K+    K
Sbjct: 1351 KALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHV---LVHR-----DAYFKKGAYMK 1402

Query: 914  LGPRYAGPFHVLERVGTLAYRLELPAGSRLHYVFHVGLLKAYRGDPPA 1057
            +   Y GPF V++++   AY L+L +  + H V +V  LK +   P A
Sbjct: 1403 VQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKFVYRPDA 1450
to top
>Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1498

 Score =  159 bits (403), Expect = 2e-38
 Identities = 113/341 (33%), Positives = 162/341 (47%), Gaps = 7/341 (2%)
 Frame = +2

Query: 35   GHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWA 214
            GH GV  TL ++   +Y P     +  ++R+CV CQ  K+   R  GLLQPL +    W 
Sbjct: 1137 GHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWL 1196

Query: 215  DISMDFIEGLPKVGGK-SIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFS 391
            DISMDF+ GLP      ++IL VVDR S  AHFIA         +    F  I   HGF 
Sbjct: 1197 DISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFP 1256

Query: 392  SSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRP 571
             +I SDRD   T   +++L +  G+K  MS+A HPQTDGQSE   + +   LR       
Sbjct: 1257 RTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNI 1316

Query: 572  RAWVDWLAWAEYCYNTSYHSALRTTPFEVVYGRPP--PAMLPYEPGTARSETAGDLLRTR 745
            + W  +L   E+ YN++    L  +PFE+  G  P  PA+   +   ARS TA +L +  
Sbjct: 1317 QNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHL 1376

Query: 746  DDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQSPDPRSKR----K 913
              +                   +   +     +GD V   L+HR     D   K+    K
Sbjct: 1377 KALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHV---LVHR-----DAYFKKGAYMK 1428

Query: 914  LGPRYAGPFHVLERVGTLAYRLELPAGSRLHYVFHVGLLKA 1036
            +   Y GPF V++++   AY L+L +  + H V +V  LK+
Sbjct: 1429 VQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKS 1469
to top
>P10394:POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1237

 Score = 93.2 bits (230), Expect = 3e-18
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 1/213 (0%)
 Frame = +2

Query: 35   GHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWA 214
            GH G+ KTL +++  +Y       ++++VR C  CQ+ KT T      +   + P   + 
Sbjct: 908  GHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKT-TKHTKTPMTITETPEHAFD 966

Query: 215  DISMDFIEGLPKV-GGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFS 391
             + +D I  LPK   G    +T++  L+ Y   I + +  +  +VA+A F+  +  +G  
Sbjct: 967  RVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVAKAIFESFILKYGPM 1025

Query: 392  SSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRP 571
             + ++D    +   +  DL +   +K   STA H QT G  E  ++ +  Y+R       
Sbjct: 1026 KTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDK 1085

Query: 572  RAWVDWLAWAEYCYNTSYHSALRTTPFEVVYGR 670
              W  WL +  YC+NT+        P+E+V+GR
Sbjct: 1086 TDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGR 1118
to top
>P27401:POL_SFV3L Pro-Pol polyprotein - Simian foamy virus type 3 (strain LK3) (SFVagm)|
            (SFV-3)
          Length = 1143

 Score = 87.8 bits (216), Expect = 1e-16
 Identities = 59/222 (26%), Positives = 100/222 (45%)
 Frame = +2

Query: 2    RHQVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLL 181
            R Q++  AH++ H G   T  ++ + ++ P     V   +R C  C      TL    +L
Sbjct: 804  RPQIILQAHNIAHTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPIL 863

Query: 182  QPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFF 361
            +P + P + +    +D+I  LP   G   +L VVD ++ +        P T+A+V     
Sbjct: 864  RP-ERPVKPFDKFFIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL-- 920

Query: 362  DGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAM 541
              ++        I SD+   FT   + D  +  G++L  ST +HPQ+ G+ E  N  I  
Sbjct: 921  -NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKR 979

Query: 542  YLRCVTGDRPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVYG 667
             L  +   RP  W D L   +   N SY  + + TP ++++G
Sbjct: 980  LLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFG 1021
to top
>P23074:POL_SFV1 Pro-Pol polyprotein - Simian foamy virus type 1 (SFVmac) (SFV-1)|
          Length = 1149

 Score = 85.9 bits (211), Expect(2) = 1e-16
 Identities = 56/222 (25%), Positives = 100/222 (45%)
 Frame = +2

Query: 2    RHQVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLL 181
            R ++++ AH++ H G   T  ++ + ++ P     V   +R C  C       L    +L
Sbjct: 804  REKIISTAHNIAHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPIL 863

Query: 182  QPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFF 361
            +P+  P + +    +D+I  LP   G   +L VVD ++ +        P T+A+V     
Sbjct: 864  RPVK-PLKPFDKFYIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL-- 920

Query: 362  DGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAM 541
              ++        + SD+   FT   + D  +  G++L  ST +HPQ+ G+ E  N  I  
Sbjct: 921  -NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKR 979

Query: 542  YLRCVTGDRPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVYG 667
             L  +   RP  W D L   +   N SY  + + TP ++++G
Sbjct: 980  LLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFG 1021



 Score = 21.9 bits (45), Expect(2) = 1e-16
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 652  RGGLRAPTSGDAPLRAWDGSV 714
            R  L  PTS  A  R+W  SV
Sbjct: 1049 RSSLHQPTSPPASSRSWSPSV 1069
to top
>P31795:POL_MLVRK Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
            Radiation murine leukemia virus (strain Kaplan)
          Length = 581

 Score = 84.7 bits (208), Expect = 9e-16
 Identities = 92/365 (25%), Positives = 141/365 (38%), Gaps = 6/365 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H G QK    L R  + +Y+      ++    SC  C Q N ++    AG
Sbjct: 227  ELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAG 286

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
            +      P   W    +DF E  P + G   +L  VD  S +       H  T   V + 
Sbjct: 287  VRVRGHRPGTHW---EIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHE-TAKIVTKK 342

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + +D  P F   V + + +L G+  ++  A+ PQ+ GQ E +N+ I
Sbjct: 343  LLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTI 402

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +  ++P  +
Sbjct: 403  KETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFHDPEMS 460

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
            +   +  L      +                   D       F VGD VW+R        
Sbjct: 461  KFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVR-------- 512

Query: 890  PDPRSKRKLGPRYAGPFHVLERVGTLAYRLELPAGSRLHYVFHVGLLKAYRGDPPAATPV 1069
                  + L PR+ GP+ VL    T    L++   S   +  HV           A TP 
Sbjct: 513  --RHQTKNLEPRWKGPYTVLLTTPT---ALKVDGISAWIHAAHV---------KAATTPP 558

Query: 1070 LPPTW 1084
            + P+W
Sbjct: 559  IRPSW 563
to top
>P11227:POL_MLVRD Pol polyprotein [Contains: Protease - Radiation murine leukemia virus|
          Length = 1196

 Score = 84.7 bits (208), Expect = 9e-16
 Identities = 92/365 (25%), Positives = 141/365 (38%), Gaps = 6/365 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H G QK    L R  + +Y+      ++    SC  C Q N ++    AG
Sbjct: 842  ELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAG 901

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
            +      P   W    +DF E  P + G   +L  VD  S +       H  T   V + 
Sbjct: 902  VRVRGHRPGTHW---EIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHE-TAKIVTKK 957

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + +D  P F   V + + +L G+  ++  A+ PQ+ GQ E +N+ I
Sbjct: 958  LLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTI 1017

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +  ++P  +
Sbjct: 1018 KETLTKLTLATGTRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFHDPEMS 1075

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
            +   +  L      +                   D       F VGD VW+R        
Sbjct: 1076 KFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVR-------- 1127

Query: 890  PDPRSKRKLGPRYAGPFHVLERVGTLAYRLELPAGSRLHYVFHVGLLKAYRGDPPAATPV 1069
                  + L PR+ GP+ VL    T    L++   S   +  HV           A TP 
Sbjct: 1128 --RHQTKNLEPRWKGPYTVLLTTPT---ALKVDGISAWIHAAHV---------KAATTPP 1173

Query: 1070 LPPTW 1084
            + P+W
Sbjct: 1174 IRPSW 1178
to top
>P03356:POL_MLVAV Pol polyprotein [Contains: Protease - AKV murine leukemia virus (AKR|
            (endogenous) murine leukemia virus)
          Length = 1196

 Score = 82.8 bits (203), Expect = 4e-15
 Identities = 92/365 (25%), Positives = 140/365 (38%), Gaps = 6/365 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H G QK    L R  + +Y+      ++    SC  C Q N ++    AG
Sbjct: 842  ELLDSLHRLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAG 901

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
            +      P   W    +DF E  P + G   +L  VD  S +          T   V++ 
Sbjct: 902  VRVRGHRPGSHW---EIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRE-TARVVSKK 957

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + SD  P FT  V + +  L G+  ++  A+ PQ+ GQ E +N+ I
Sbjct: 958  LLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTI 1017

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +  ++P  +
Sbjct: 1018 KETLTKLTLAAGTRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFHDPDMS 1075

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
                +  L      +                   D       F +GD VW+R        
Sbjct: 1076 ELTNSPSLQAHLQALQTVQREIWKPLAEAYRDQLDQPVIPHPFRIGDSVWVR-------- 1127

Query: 890  PDPRSKRKLGPRYAGPFHVLERVGTLAYRLELPAGSRLHYVFHVGLLKAYRGDPPAATPV 1069
                  + L PR+ GP+ VL    T    L++   S   +  HV           A TP 
Sbjct: 1128 --RHQTKNLEPRWKGPYTVLLTTPT---ALKVDGISAWIHAAHV---------KAATTPP 1173

Query: 1070 LPPTW 1084
            + P+W
Sbjct: 1174 IKPSW 1178
to top
>P14350:POL_FOAMV Pro-Pol polyprotein - Human spumaretrovirus (SFVcpz(hu)) (Human foamy|
            virus)
          Length = 1143

 Score = 78.6 bits (192), Expect = 7e-14
 Identities = 55/222 (24%), Positives = 96/222 (43%)
 Frame = +2

Query: 2    RHQVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLL 181
            R +++  AH++ H G + TL ++   ++ P     V   +  C  C            +L
Sbjct: 805  RQKIVLQAHNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPIL 864

Query: 182  QPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFF 361
            +P D P + +    +D+I  LP   G   +L VVD ++ +        P T+A+V     
Sbjct: 865  RP-DRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSL-- 921

Query: 362  DGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAM 541
              ++        I SD+   FT   + +  +  G+ L  ST +HPQ+  + E  N  I  
Sbjct: 922  -NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKR 980

Query: 542  YLRCVTGDRPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVYG 667
             L  +   RP  W D L   +   N +Y   L+ TP ++++G
Sbjct: 981  LLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFG 1022
to top
>P10272:POL_BAEVM Pol polyprotein [Contains: Protease - Baboon endogenous virus (strain|
            M7)
          Length = 1189

 Score = 78.2 bits (191), Expect = 9e-14
 Identities = 78/300 (26%), Positives = 121/300 (40%), Gaps = 7/300 (2%)
 Frame = +2

Query: 71   RADFYIPGDGAMVRDWVRSCVTCQR-NKTETLRPAGLLQPLDVPSQVWADISMDFIEGLP 247
            + DF IP    ++     +C  CQ+ N   T  PAG     + P   W    +DF E  P
Sbjct: 861  KTDFLIPRASTLIEQVTSACKVCQQVNAGATRVPAGKRTRGNRPGVYW---EIDFTEVKP 917

Query: 248  KVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFSSSIVSDRDPVFT 427
               G   +L  VD  S +          T   VA+   + I    G    I SD  P F 
Sbjct: 918  HYAGYKYLLVFVDTFSGWVEAFPTRQE-TAHIVAKKILEEIFPRFGLPKVIGSDNGPAFV 976

Query: 428  GHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRAWVDWLAWAEY 607
              V + L R+ G+  ++  A+ PQ+ GQ E +N+ I   L  +T +      DW      
Sbjct: 977  SQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLE--TGLKDWRRLLSL 1034

Query: 608  CYNTSYHSALR--TTPFEVVYGRPPP---AMLPYEPGTARSETAGDLLRTRDDIXXXXXX 772
                + ++  R   TP+E++YG PPP    +  + P  ++++     L+ R  +      
Sbjct: 1035 ALLRARNTPNRFGLTPYEILYGGPPPLSTLLNSFSPSNSKTD-----LQAR--LKGLQAV 1087

Query: 773  XXXXXXXXXXKYYDAHHREAE-FAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAGPFHVL 949
                       Y   H + +  F VGD V++R  HR          + L PR+ GP+ VL
Sbjct: 1088 QAQIWAPLAELYRPGHSQTSHPFQVGDSVYVR-RHR---------SQGLEPRWKGPYIVL 1137
to top
>P31792:POL_FENV1 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
            Feline endogenous virus ECE1
          Length = 1046

 Score = 77.4 bits (189), Expect = 1e-13
 Identities = 90/351 (25%), Positives = 130/351 (37%), Gaps = 13/351 (3%)
 Frame = +2

Query: 71   RADFYIPGDGAMVRDWVRSCVTCQR-NKTETLRPAGLLQPLDVPSQVWADISMDFIEGLP 247
            + DF IP  G ++     +C  CQ+ N   T  P G     + P   W    +DF E  P
Sbjct: 718  KTDFLIPKAGTLIEQVTSACKVCQQVNAGATRVPEGKRTRGNRPGVYW---EIDFTEVKP 774

Query: 248  KVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFSSSIVSDRDPVFT 427
               G   +L  VD  S +          T   VA+   + I    G    I SD  P F 
Sbjct: 775  HYAGYKYLLVFVDTFSGWVEAYPTRQE-TAHMVAKKILEEIFPRFGLPKVIGSDNGPAFV 833

Query: 428  GHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRPRAWVDWLAWAEY 607
              V + L R  G+  ++  A+ PQ+ GQ E +N+ I   L  +T +      DW      
Sbjct: 834  SQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLE--TGLKDWRRLLSL 891

Query: 608  CYNTSYHSALR--TTPFEVVYGRPPP------AMLPYEPGTARSETAGDLLRTRDDIXXX 763
                + ++  R   TP+E++YG PPP      +  P +P T        L   +  I   
Sbjct: 892  ALLRARNTPNRFGLTPYEILYGGPPPLSTLLNSFSPSDPKTDLQARLKGLQAVQAQIWTP 951

Query: 764  XXXXXXXXXXXXXKYYDAHHREA-EFAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAGPF 940
                          Y   H + +  F VGD V++R  HR          + L PR+ GP+
Sbjct: 952  LAEL----------YRPGHPQTSYPFQVGDSVYVR-WHR---------SQGLEPRWKGPY 991

Query: 941  HVLERVGTLAYRLELPAGSRLHYV---FHVGLLKAYRGDPPAATPVLPPTW 1084
             VL         L  P   ++  +    H    KA    P    P  P TW
Sbjct: 992  IVL---------LTTPTAIKVDGIAAWIHASHAKA---APKTPGPETPKTW 1030
to top
>P26808:POL_MLVFP Pol polyprotein [Contains: Protease - Friend murine leukemia virus|
            (isolate PVC-211) (FrMLV)
          Length = 1204

 Score = 76.3 bits (186), Expect = 3e-13
 Identities = 81/320 (25%), Positives = 122/320 (38%), Gaps = 6/320 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H    KT   L R  + +Y+      ++D   +C  C Q N +++    G
Sbjct: 847  ELLDFLHQLTHLSFSKTKALLERSYSPYYMLNRDRTLKDITETCKACAQVNASKSAVKQG 906

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
                   P   W    +DF E  P + G   +L  VD  S +          T   V + 
Sbjct: 907  TRVRGHRPGTHW---EIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKE-TAKVVTKK 962

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + +D  P F   V + +  L GV  ++  A+ PQ+ GQ E +N+ I
Sbjct: 963  LLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTI 1022

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +   +P  A
Sbjct: 1023 KETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFPDPDMA 1080

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
            +      L      +                +  D       F VGD VW+R        
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVR-------- 1132

Query: 890  PDPRSKRKLGPRYAGPFHVL 949
                  + L PR+ GP+ VL
Sbjct: 1133 --RHQTKNLEPRWKGPYTVL 1150
to top
>P26809:POL_MLVFF Pol polyprotein [Contains: Protease - Friend murine leukemia virus|
            (isolate FB29) (FrMLV)
          Length = 1204

 Score = 75.1 bits (183), Expect = 7e-13
 Identities = 80/320 (25%), Positives = 121/320 (37%), Gaps = 6/320 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H    KT   L R    +Y+      ++D   +C  C Q N +++    G
Sbjct: 847  ELLDFLHQLTHLSFSKTKALLERNYCPYYMLNRDRTLKDITETCQACAQVNASKSAVKQG 906

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
                   P   W    +DF E  P + G   +L  +D  S +          T   V + 
Sbjct: 907  TRVRGHRPGTHW---EIDFTEVKPGLYGYKYLLVFIDTFSGWVEAFPTKKE-TAKVVTKK 962

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + +D  P F   V + +  L GV  ++  A+ PQ+ GQ E +N+ I
Sbjct: 963  LLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTI 1022

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +   +P  A
Sbjct: 1023 KETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFPDPDMA 1080

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
            +      L      +                +  D       F VGD VW+R        
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVR-------- 1132

Query: 890  PDPRSKRKLGPRYAGPFHVL 949
                  + L PR+ GP+ VL
Sbjct: 1133 --RHQTKNLEPRWKGPYTVL 1150
to top
>P26810:POL_MLVF5 Pol polyprotein [Contains: Protease - Friend murine leukemia virus|
            (isolate 57) (FrMLV)
          Length = 1204

 Score = 74.3 bits (181), Expect = 1e-12
 Identities = 81/320 (25%), Positives = 121/320 (37%), Gaps = 6/320 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H    KT   L R  +  Y+      ++D   +C  C Q N +++    G
Sbjct: 847  ELLDFLHQLTHLSFSKTKALLERSYSPSYMLNRDRTLKDITETCKACAQVNASKSAVKQG 906

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
                   P   W    +DF E  P + G   +L  VD  S +          T   V + 
Sbjct: 907  TRVRGHRPGTHW---EIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKE-TAKVVTKK 962

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + +D  P F   V + +  L GV  ++  A+ PQ+ GQ E +N+ I
Sbjct: 963  LLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTI 1022

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +   +P  A
Sbjct: 1023 KETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFPDPDMA 1080

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
            +      L      +                +  D       F VGD VW+R        
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVR-------- 1132

Query: 890  PDPRSKRKLGPRYAGPFHVL 949
                  + L PR+ GP+ VL
Sbjct: 1133 --RHQTKNLEPRWKGPYTVL 1150
to top
>Q9TTC1:POL_KORV Pro-Pol polyprotein - Koala retrovirus (KoRV)|
          Length = 1127

 Score = 73.9 bits (180), Expect = 2e-12
 Identities = 63/224 (28%), Positives = 93/224 (41%), Gaps = 4/224 (1%)
 Frame = +2

Query: 26   HSVGHEGVQKTLHRL-RADFYIPGDGAMVRDWVRSCVTCQ-RNKTETLRPAGLLQPLDVP 199
            H + H G  K L  + R  F+IP   ++VR+    C  C   N   T R  G  Q  D P
Sbjct: 779  HQLTHLGPDKLLQLVGRTSFHIPNLQSVVREITSKCQVCAVTNAVTTYREPGRRQRGDRP 838

Query: 200  SQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRL 379
               W    +DF E  P   G   +L  +D  S +          T  +V +   + I+  
Sbjct: 839  GVYW---EVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPT-KTETALTVCKKILEEILPR 894

Query: 380  HGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYL-RCV 556
             G    + SD  P F   V + L    G+  ++  A+ PQ+ GQ E +N+ I   L +  
Sbjct: 895  FGIPKVLGSDNGPAFVAQVSQGLATQLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLA 954

Query: 557  TGDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAM 685
                 + WV  L  A     NT     L  TP+E+++G PPP +
Sbjct: 955  LETGGKDWVTLLPLALLRARNTPGQFGL--TPYEILHGGPPPVL 996
to top
>P21414:POL_GALV Pol polyprotein [Contains: Protease - Gibbon ape leukemia virus|
            (GALV)
          Length = 1165

 Score = 72.0 bits (175), Expect = 6e-12
 Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 4/224 (1%)
 Frame = +2

Query: 26   HSVGHEGVQKTLHRL-RADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAGLLQPLDVP 199
            H + H G +K L  + R    IP   + VR+    C  C   N   T R  G  Q  D P
Sbjct: 817  HQLTHLGPEKLLQLVNRTSLLIPNLQSAVREVTSQCQACAMTNAVTTYRETGKRQRGDRP 876

Query: 200  SQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRL 379
               W    +DF E  P   G   +L  +D  S +          T   V +   + I+  
Sbjct: 877  GVYW---EVDFTEIKPGRYGNKYLLVFIDTFSGWVEAFPT-KTETALIVCKKILEEILPR 932

Query: 380  HGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYL-RCV 556
             G    + SD  P F   V + L    G+  ++  A+ PQ+ GQ E +N+ I   L +  
Sbjct: 933  FGIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLA 992

Query: 557  TGDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAM 685
                 + WV  L  A     NT     L  TP+E++YG PPP +
Sbjct: 993  LETGGKDWVTLLPLALLRARNTPGRFGL--TPYEILYGGPPPIL 1034
to top
>O93209:POL_FFV Pro-Pol polyprotein - Feline foamy virus (FFV) (Feline syncytial|
            virus)
          Length = 1156

 Score = 72.0 bits (175), Expect = 6e-12
 Identities = 51/224 (22%), Positives = 103/224 (45%), Gaps = 2/224 (0%)
 Frame = +2

Query: 2    RHQVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLL 181
            R++++  AH++ H G +  L +++ +++ P     +  ++ +C  C+      L+P    
Sbjct: 806  RYKLIKEAHNISHAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPIS-P 864

Query: 182  QPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFF 361
            Q +  P++ +    MD+I  LP   G   +L VVD  + +          T A  ++A  
Sbjct: 865  QAIVHPTKPFDKFYMDYIGPLPPSEGYVHVLVVVDAATGFTWLYP-----TKAQTSKATI 919

Query: 362  DGIVRLHGFSSSIV--SDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              +  L G +   V  SD+   FT   +    +   ++L  ST +HPQ+ G+ E  N  I
Sbjct: 920  KVLNHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEI 979

Query: 536  AMYLRCVTGDRPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVYG 667
               L  +   RP  W + ++  +   N ++  + + TP ++++G
Sbjct: 980  KKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFG 1023
to top
>P03355:POL_MLVMO Pol polyprotein [Contains: Protease - Moloney murine leukemia virus|
            (MoMLV)
          Length = 1199

 Score = 71.6 bits (174), Expect = 8e-12
 Identities = 76/320 (23%), Positives = 121/320 (37%), Gaps = 6/320 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKT---LHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAG 175
            ++L   H + H    K    L R  + +Y+      +++   +C  C Q N +++    G
Sbjct: 842  ELLDFLHQLTHLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNASKSAVKQG 901

Query: 176  LLQPLDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARA 355
                   P   W    +DF E  P + G   +L  +D  S +          T   V + 
Sbjct: 902  TRVRGHRPGTHW---EIDFTEIKPGLYGYKYLLVFIDTFSGWIEAFPTKKE-TAKVVTKK 957

Query: 356  FFDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI 535
              + I    G    + +D  P F   V + +  L G+  ++  A+ PQ+ GQ E +N+ I
Sbjct: 958  LLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTI 1017

Query: 536  AMYLRCVT-GDRPRAWVDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTA 709
               L  +T     R WV  L  A Y   NT     L  TP+E++YG PPP +   +P   
Sbjct: 1018 KETLTKLTLATGSRDWVLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFPDPDMT 1075

Query: 710  RSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQS 889
            R   +  L      +                +  D       + VGD VW+R        
Sbjct: 1076 RVTNSPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWVR-------- 1127

Query: 890  PDPRSKRKLGPRYAGPFHVL 949
                  + L PR+ GP+ VL
Sbjct: 1128 --RHQTKNLEPRWKGPYTVL 1145
to top
>P03360:POL_AVIRE Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
           Avian reticuloendotheliosis virus
          Length = 473

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 60/229 (26%), Positives = 89/229 (38%), Gaps = 3/229 (1%)
 Frame = +2

Query: 8   QVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTC-QRNKTETLRPAGLLQ 184
           +VL   H   H G  K    +R  + I G     RD    CV C Q N        GL  
Sbjct: 122 KVLEQTHRATHLGESKLTELVRKHYPICGIYRAARDITTRCVACAQVNPRAAPVEKGLNS 181

Query: 185 PLD--VPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAF 358
            +    P + W    +DF E +   GG   +L +VD  S +          +   +    
Sbjct: 182 RIRGAAPGEHW---EVDFTEMITAKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLI 238

Query: 359 FDGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIA 538
            D I R  G    I SD  P F   V + L     V  ++  A+ PQ+ GQ E +N+ + 
Sbjct: 239 LDIIPRF-GLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLK 297

Query: 539 MYLRCVTGDRPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVYGRPPPAM 685
             +  +  DR R  +     + +   T Y      +PFE++YG  PP +
Sbjct: 298 KAIAKLE-DRDRRGLGLPPPSGFAPGTVYPGREGLSPFEILYGLKPPVV 345
to top
>P08361:POL_MLVCB Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
           Cas-Br-E murine leukemia virus
          Length = 282

 Score = 67.4 bits (163), Expect = 2e-10
 Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 2/244 (0%)
 Frame = +2

Query: 224 MDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFSSSIV 403
           +DF E  P++ G   +L  VD  S +          T   V +   + I    G    + 
Sbjct: 1   IDFTEVKPRLYGYKYLLVFVDTFSGWIEAFPTKKE-TAKVVTKKLLEEIFPRFGMPQVLG 59

Query: 404 SDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVT-GDRPRAW 580
           +D  P F   V + +  L G+  ++  A+ PQ+ GQ E +N+ I   L  +T     R W
Sbjct: 60  TDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDW 119

Query: 581 VDWLAWAEY-CYNTSYHSALRTTPFEVVYGRPPPAMLPYEPGTARSETAGDLLRTRDDIX 757
           V  L  A Y   NT     L  TP+E++YG PPP +   +P   R   +  L      + 
Sbjct: 120 VLLLPLALYRARNTPGPHGL--TPYEILYGAPPPLVNFPDPDMTRVTNSPSLQAHLQALY 177

Query: 758 XXXXXXXXXXXXXXXKYYDAHHREAEFAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAGP 937
                          +  D       + VGD VW+R              + L PR+ GP
Sbjct: 178 LVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWVR----------RHQTKNLEPRWKGP 227

Query: 938 FHVL 949
           + VL
Sbjct: 228 YTVL 231
to top
>P10401:POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy [Includes:|
            Reverse transcriptase - Drosophila melanogaster (Fruit
            fly)
          Length = 1035

 Score = 66.2 bits (160), Expect = 3e-10
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 4/223 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQP 187
            +++T  H+  H   Q+ + ++  D+Y P  G++ ++ V +C  C + K +       L  
Sbjct: 740  EIVTAEHNRAHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGE 799

Query: 188  LDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVA--RAFF 361
              +PS     + +D          + + LT +D+ S Y    A+  P  + ++    A  
Sbjct: 800  TPIPSYTGEMVHIDIFS-----TDRKLFLTCIDKFSKY----AIVQPVVSRTIVDITAPL 850

Query: 362  DGIVRLHGFSSSIVSDRDPVFTGHVWRDLFRLA-GVKLRMSTAFHPQTDGQSEVVNKVIA 538
              I+ L     ++  D +P F       + + + G+ +  +   H  ++GQ E  +  +A
Sbjct: 851  LQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLA 910

Query: 539  MYLRCVTGD-RPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVY 664
               RC+  D +    V+ +  A   YN + HS  R  P EVV+
Sbjct: 911  EIARCLKLDKKTNDTVELILRATIEYNKTVHSVTRERPIEVVH 953
to top
>Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabditis elegans|
          Length = 1268

 Score = 62.4 bits (150), Expect = 5e-09
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 4/216 (1%)
 Frame = +2

Query: 35   GHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRN-KTETLRPAGLLQPLDVPSQVW 211
            GH G+ +   + R+  +  G  + + + VR C  CQ N K   + P   L P  VP   W
Sbjct: 793  GHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP---LNPWPVPEAPW 849

Query: 212  ADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGFS 391
              I +DF   L        +L VVD  + YA  + L    +  +      + I  +HG+ 
Sbjct: 850  KRIHIDFAGPL----NGCYLLVVVDAKTKYAE-VKLTRSISAVTTID-LLEEIFSIHGYP 903

Query: 392  SSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCVTGDRP 571
             +I+SD     T H++  + +  G++ + S  ++P+++G +E   + +    R +   + 
Sbjct: 904  ETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAE---RFVDTLKRGIAKIKG 960

Query: 572  RAWVDWLAWAEY--CYNTSYHSALR-TTPFEVVYGR 670
               V+     ++   Y  + HSAL  +TP E  +GR
Sbjct: 961  EGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGR 996
to top
>P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabditis elegans|
          Length = 2186

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 6/218 (2%)
 Frame = +2

Query: 35   GHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTC-----QRNKTETLRPAGLLQPLDVP 199
            GH G++K    +   FY P     V + VR+C  C         T +L P  +  PL++ 
Sbjct: 1479 GHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEI- 1537

Query: 200  SQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRL 379
                  ++ D ++    V G   ILT++D  + Y   + +       +V +AF +     
Sbjct: 1538 ------VACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDK-KAETVLKAFVERWAIG 1590

Query: 380  HG-FSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAMYLRCV 556
             G     +++D+   F   ++     +  ++   +  ++ + +G  E  NK I   ++  
Sbjct: 1591 EGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKK 1650

Query: 557  TGDRPRAWVDWLAWAEYCYNTSYHSALRTTPFEVVYGR 670
            T   P  W D + +A Y YN   H     TP  +++GR
Sbjct: 1651 TAV-PMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGR 1687
to top
>P03359:POL_WMSV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -|
           Woolly monkey sarcoma virus (WMSV) (Smian
           sarcoma-associated virus)
          Length = 294

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 5/170 (2%)
 Frame = +2

Query: 191 DVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGI 370
           D P   W    +DF E  P   G   +L  +D  S +        P  T +         
Sbjct: 7   DRPGVYW---EVDFTEVKPGRYGNRYLLVFIDTFSGWVE----AFPTKTETALTVCKRNS 59

Query: 371 VRLHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVI---AM 541
             L      + SD  P F   V + L    G+  ++  A+ PQ+ GQ E +N+ I     
Sbjct: 60  TPLR-IPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLT 118

Query: 542 YLRCVTGDRPRAWVDWLAWAEYCYNTSYHSALR--TTPFEVVYGRPPPAM 685
            L   TG +     DW+A        + ++  R   TP+E++YG PPP +
Sbjct: 119 KLALETGGK-----DWVALLPLALLRAKNTPSRFGLTPYEILYGGPPPIL 163
to top
>Q8I7P9:POL5_DROME Retrovirus-related Pol polyprotein from transposon opus [Includes:|
            Protease - Drosophila melanogaster (Fruit fly)
          Length = 1003

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 3/224 (1%)
 Frame = +2

Query: 8    QVLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQP 187
            +++   H   H G  +   +L   +Y P   + +R    SC  C+  K E       LQP
Sbjct: 695  EIIEKEHRRAHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQP 754

Query: 188  LDVPSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDG 367
              +P+     + +D          K + L+ +D+ S +A    L H  + ASV       
Sbjct: 755  TPIPNYPCEILHIDIF-----ALEKRLYLSCIDKFSKFA---KLFHLQSKASV-HLRETL 805

Query: 368  IVRLHGFSSS--IVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNKVIAM 541
            +  LH F++   +VSD +         +  R   + L  +     + +GQ E  +     
Sbjct: 806  VEALHYFTAPKVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLE 865

Query: 542  YLRCVTGDRPR-AWVDWLAWAEYCYNTSYHSALRTTPFEVVYGR 670
              RC+  + P    V+ +  A   YNTS HS     P +V + R
Sbjct: 866  IYRCLKDELPTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDR 909
to top
>P24577:YI71_BURCE Insertion element IS407 uncharacterized 20.5 kDa protein -|
           Burkholderia cepacia (Pseudomonas cepacia)
          Length = 183

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
 Frame = +2

Query: 197 PSQVWADISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVR 376
           P++VW   S+DF+      G +   LTVVD  +  A  I + H  +   VARA  D   R
Sbjct: 13  PNEVW---SIDFVMDALSNGRRVKCLTVVDDFTKEAVDIVVDHGISGLYVARA-LDRAAR 68

Query: 377 LHGFSSSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVN---------- 526
             G+  ++ +D+ P FT           GV L++  A  P  +   E  N          
Sbjct: 69  FRGYPKAVRTDQGPEFTSRALDQWAYANGVTLKLIQAGKPTQNAYIESFNGKFRDECLNE 128

Query: 527 ----------KVIAMYLRCVTGDRPRAWVDWLAWAEY 607
                      VIA + +     RP + +++LA +E+
Sbjct: 129 HWFTTLAHARAVIAAWRQDYNEQRPHSALNYLAPSEF 165
to top
>O75154:RFIP3_HUMAN Rab11 family-interacting protein 3 - Homo sapiens (Human)|
          Length = 756

 Score = 37.7 bits (86), Expect = 0.13
 Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
 Frame = -2

Query: 1070 GPA-SLQEGPRGRPSVSRHGIRSGGENQLAAPS--GMRVCRHAPAHERDRRSEVPICAWS 900
            GPA  L+ GPR  P  S    RSG   QLA+P   G      AP  E D     P+ +W+
Sbjct: 73   GPAPGLEGGPRD-PGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELD-----PLFSWT 126

Query: 899  AGPEIA*SCGEGAATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQP---ECRRGCGVS 729
              PE    CG  +   +   R       HR+  E+ V     +  P P   E     G  
Sbjct: 127  EEPE---ECGPASCPESAPFRLQGSSSSHRARGEVDVF----SPFPAPTAGELALEQGPG 179

Query: 728  RPPSRTEPSQARKGASPEVGAR 663
             PP  ++ SQ     S  VG++
Sbjct: 180  SPPQPSDLSQTHPLPSEPVGSQ 201
to top
>P97305:NFAC3_MOUSE Nuclear factor of activated T-cells, cytoplasmic 3 - Mus musculus|
            (Mouse)
          Length = 1075

 Score = 36.2 bits (82), Expect = 0.38
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 255  AASPSSSRWLTAYPCTRTSSPWVIHIQPPPWRGPSS-TASSASTVFRRPSSAIVIPCSRD 431
            AASP++S  L + P +  SSP    +QP P++ PSS TASS S   R  S          
Sbjct: 924  AASPAASHPLASSPISGPSSP---QLQPMPYQSPSSGTASSPSPTTRMHSGQHSTQAQST 980

Query: 432  MSGGIS 449
              GG+S
Sbjct: 981  GQGGLS 986
to top
>Q8TD26:CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 - Homo sapiens (Human)|
          Length = 2715

 Score = 35.4 bits (80), Expect = 0.64
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 1111 QVAKVLQAQQRRGVWHVLVQWTGLPEEEATWEKLDD 1218
            +VA    A+    V H LV+W  LP EE+TWE  +D
Sbjct: 382  EVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEED 417
to top
>Q7Z2K8:GRIN1_HUMAN G protein-regulated inducer of neurite outgrowth 1 - Homo sapiens|
            (Human)
          Length = 1008

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -3

Query: 598  PRQPVHPSSWTITSNTTQVHGDHL-VDHLGLAVCLRVERRAHAELHARQSKEIPPDMSRE 422
            P +PV   SW     T +V+G  + V+ LG+A+   +ER+   E H RQ    PP  +R 
Sbjct: 906  PAEPVRDVSWDEKGMTWEVYGAAMEVEVLGMAIQKHLERQ--IEEHGRQGAPAPPPAARA 963

Query: 421  HGITIADDGRRKTVEADDAVEEGP 350
                    G  +T   D A +  P
Sbjct: 964  GP---GRSGSVRTAPPDGAAKRPP 984
to top
>Q6DD51:CSKI2_XENLA Caskin-2 - Xenopus laevis (African clawed frog)|
          Length = 1205

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
 Frame = -2

Query: 941  ERDRRSEVPICAWSAGPEIA*SCGEGAATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVP 762
            E + R E PI +  +  E      EG  T  ++P+ P    E  +TSEL+    +++ + 
Sbjct: 899  EEEERKEEPISSQHSSSESIPFAEEGNLTIKQRPKPPGAKLEQDATSELSPT--QESQLQ 956

Query: 761  QPECRR---GCGVSRPPSRTEPSQARK--------GASPEVGARRPP 654
              E +R      V   P     +QAR         G  P+ GAR PP
Sbjct: 957  SAEAQRHLESSAVLAKPVTVVLAQARPQIAAKPQIGPKPDTGARAPP 1003
to top
>P16103:POL_MCFF3 Pol polyprotein - Mink cell focus-forming murine leukemia virus|
            (isolate CI-3)
          Length = 156

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 39/158 (24%), Positives = 56/158 (35%), Gaps = 3/158 (1%)
 Frame = +2

Query: 644  TPFEVVYGRPPPAMLPYEPGTARSETAGDLLRTRDDIXXXXXXXXXXXXXXXXKYYDAHH 823
            TP+E++YG PPP +  ++P  +    +  L      +                   D   
Sbjct: 10   TPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWRPLAEAYRDRLDQPV 69

Query: 824  REAEFAVGDWVWLRLLHRITQSPDPRSKRKLGPRYAGPFHVLERVGTLAYRLELPAGSRL 1003
                F  GD VW+R  H+   S          PR+ GP+ VL         L  P   ++
Sbjct: 70   IPHPFRTGDSVWVR-RHQTKNSE---------PRWKGPYTVL---------LTTPTALKV 110

Query: 1004 HYV---FHVGLLKAYRGDPPAATPVLPPTWDGASFQLP 1108
              +    H   +KA    PPA T    PTW     Q P
Sbjct: 111  DGIAAWIHAAHVKA-ATTPPAGT-ASGPTWKVQRSQNP 146
to top
>O88737:BSN_MOUSE Protein bassoon - Mus musculus (Mouse)|
          Length = 3942

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 5/153 (3%)
 Frame = -2

Query: 1100 GRRRHPK*EEG-PASLQEGPRGRPSVSRHGIRSGGENQLAAPSGMRVCRHAPAHERDRRS 924
            GR+  P  ++  P S ++ P G  S      +   + Q     G +  + AP+  R +  
Sbjct: 3758 GRQAAPGPQQSQPPSSRQTPSGTASRQPQTQQQQQQQQQQQGLGQQAPQQAPSQARLQPQ 3817

Query: 923  EVPICAWSAGPEIA*SCGE---GAAT-PNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQP 756
              P    +A P  +   G+   G  T P  QP  PPR ++  S+   A    +    PQ 
Sbjct: 3818 SQPTTRGTA-PAASQPAGKPQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQQGRAPQA 3876

Query: 755  ECRRGCGVSRPPSRTEPSQARKGASPEVGARRP 657
            +   G G    P+  +P  AR G +P   A +P
Sbjct: 3877 QTTPGPG----PAGAKPG-ARPGGTPGAPAGQP 3904
to top
>Q9Y232:CDYL1_HUMAN Chromodomain Y-like protein - Homo sapiens (Human)|
          Length = 598

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
 Frame = +1

Query: 1039 PRGPSCSDAGPSSYLGWRLLPASAQVAKVLQAQQ-RRGVWHVLVQWTGLPEEEATWEK-- 1209
            P GPS      SS       P + QV +++  ++ ++G    LV+W G   E+ TWE   
Sbjct: 38   PDGPSDPSISVSSEQSGAQQPPALQVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQ 97

Query: 1210 --------LDDFRQQFPDVQLEDEL 1260
                    + DF ++  + Q E  L
Sbjct: 98   HLVNCEEYIHDFNRRHTEKQKESTL 122
to top
>P04323:POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 [Includes:|
           Protease - Drosophila melanogaster (Fruit fly)
          Length = 1058

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 11  VLTLAHSVGHEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTE 157
           +LT    + H G+QKT       +Y P    ++++ +  C  C   KTE
Sbjct: 754 ILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTE 802
to top
>Q32MK0:MYLK3_HUMAN Putative myosin light chain kinase 3 - Homo sapiens (Human)|
          Length = 819

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 33/122 (27%), Positives = 41/122 (33%)
 Frame = -2

Query: 1073 EGPASLQEGPRGRPSVSRHGIRSGGENQLAAPSGMRVCRHAPAHERDRRSEVPICAWSAG 894
            E PA+ Q G +G P   R     G E     P G R    +P  E            S G
Sbjct: 363  EAPAAAQPGKQGPPGTGRCLQAPGTEPGEQTPEGAREL--SPLQESS----------SPG 410

Query: 893  PEIA*SCGEGAATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQPECRRGCGVSRPPSR 714
               A       A P  +P     DD       L +  G+  G   PE  + C  +R P R
Sbjct: 411  GVKAEEEQRAGAEPGTRPSLARSDDNDHEVGALGLQQGKSPGAGNPEPEQDC-AARAPVR 469

Query: 713  TE 708
             E
Sbjct: 470  AE 471
to top
>Q5RDG7:MYLK3_PONPY Putative myosin light chain kinase 3 - Pongo pygmaeus (Orangutan)|
          Length = 819

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 2/124 (1%)
 Frame = -2

Query: 1073 EGPASLQEGPRGRPSVSRHGIRSGGENQLAAPSGMRVCRHAPAHERDRRSEVPICAWSAG 894
            + PA+ Q G +G P   R     G E     P G R              E+ +   S+ 
Sbjct: 363  DAPAAAQPGKQGPPGTGRCHQAPGTEPGEQTPEGAR--------------ELSLLQESSS 408

Query: 893  PEIA*SCGE--GAATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQPECRRGCGVSRPP 720
            P    +  E    A P  +P     DD       L +  G+  GV  PE  + C  +R P
Sbjct: 409  PGGVKAEEEQRAGAEPGTRPSLARSDDNDHKVGALGLQQGKSPGVGNPEPEQDC-AARAP 467

Query: 719  SRTE 708
             R E
Sbjct: 468  VRAE 471
to top
>O60244:CRSP2_HUMAN CRSP complex subunit 2 - Homo sapiens (Human)|
          Length = 1454

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 22/55 (40%), Positives = 26/55 (47%)
 Frame = +3

Query: 285  TAYPCTRTSSPWVIHIQPPPWRGPSSTASSASTVFRRPSSAIVIPCSRDMSGGIS 449
            T+Y  T   SP ++H Q P   G    ASS S   R PS A  +P     S GIS
Sbjct: 1026 TSYHSTVNQSPSMMHTQSP---GNLHAASSPSGALRAPSPASFVPTPPPSSHGIS 1077
to top
>O19012:ADA2B_ERIEU Alpha-2B adrenergic receptor - Erinaceus europaeus (Western European|
            hedgehog)
          Length = 391

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
 Frame = -2

Query: 1049 GPRGRPSVSRHGIRSGGENQLAAPSGMR----VCRHAPAHERDRRSEVPICAWSAGPEIA 882
            GPR + +  +   +  G+  L APS  +    V R   A E +R S+      S G ++ 
Sbjct: 193  GPRAKGAPGKGESKQTGQASLGAPSSAKLPNLVSRLVAAREANRHSK------STGEKVE 246

Query: 881  *SCGEGAATPNRQPRTPPRDDEHRSTSE 798
                EG  TP   P  PP     R   E
Sbjct: 247  GETPEGPGTPGVPPSWPPLPSSGRGQEE 274
to top
>Q9P2D1:CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 - Homo sapiens (Human)|
          Length = 2997

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 1150 VWHVLVQWTGLPEEEATWEKLDDFRQ 1227
            V H LV+W  LP E++TWE+  D  Q
Sbjct: 901  VTHYLVKWCSLPYEDSTWERRQDIDQ 926
to top
>P55389:Y4CG_RHISN Probable DNA-invertase y4cG - Rhizobium sp. (strain NGR234)|
          Length = 305

 Score = 32.7 bits (73), Expect = 4.2
 Identities = 56/199 (28%), Positives = 74/199 (37%), Gaps = 10/199 (5%)
 Frame = -3

Query: 904 GARVRRLRDPVEKAQPHPIANRELRLAMMSIVVLPS*LLCLEKT----LACLSQNVVAGA 737
           G   R LRDP++ + PH +      L ++  V      L  E+T     A  ++  +AG 
Sbjct: 98  GVHFRSLRDPIDTSTPHGM----FSLQVLGAVAQLERALIAERTKSGMQAAKARGRLAGN 153

Query: 736 E*VARRLGPSRPRLVREHRRRWAPVDHLERRXXXXXXXXXXXXVLRPRQPVHPSSWTITS 557
             +  R  P   R V   R R     +L+               LRPR      SW    
Sbjct: 154 PGLRER-RPEAIRAVSAARER----AYLDELIVSAQTWLPTVRRLRPRH-----SWDNVV 203

Query: 556 NTTQVHG-DHLVDHLGLAVCLRV-ERRAHAELHARQSKEIPPD--MSREHGITIADD--G 395
                 G D  V+ L  AV   V E+ A  EL AR  +  P D  M    GI IAD    
Sbjct: 204 RILNRRGHDWTVERLRRAVHRLVREKLAEPELLARSLRRPPEDHLMRLVAGIAIADPNLS 263

Query: 394 RRKTVEADDAVEEGPRHGG 338
            R      D ++E P  GG
Sbjct: 264 LRDIAAQLDQMQERPPRGG 282
to top
>Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 - Mus musculus (Mouse)|
          Length = 2703

 Score = 32.7 bits (73), Expect = 4.2
 Identities = 38/143 (26%), Positives = 51/143 (35%)
 Frame = -2

Query: 1076 EEGPASLQEGPRGRPSVSRHGIRSGGENQLAAPSGMRVCRHAPAHERDRRSEVPICAWSA 897
            +  P      PR  P  SR G  S  + +  +P G      +P H    R+         
Sbjct: 1575 DSSPEHKIPAPRALPRHSRSG--SSSKERGPSPEGSSSSESSPEHAPKSRT--------- 1623

Query: 896  GPEIA*SCGEGAATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQPECRRGCGVSRPPS 717
                A      +  P  + RTPPR    RS+               PE  R   VSR  S
Sbjct: 1624 ----ARRGSRSSIEPKTKSRTPPRRRSSRSS---------------PELTRKARVSRR-S 1663

Query: 716  RTEPSQARKGASPEVGARRPPRK 648
            R+  S      SPE+ +R PPR+
Sbjct: 1664 RSASS------SPEIRSRTPPRR 1680



 Score = 32.0 bits (71), Expect = 7.1
 Identities = 53/184 (28%), Positives = 73/184 (39%), Gaps = 6/184 (3%)
 Frame = -1

Query: 591  NQSTQARGRSPVTQR-----RYMAITLLTTSDWPSV*GWNAVLMRSFTPASRKRSRQTCP 427
            +++TQ RGRS   +R     R  A    + S  P+  G +    RS TPA R+RSR   P
Sbjct: 542  SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRS----RSRTPA-RRRSRSRTP 596

Query: 426  VNTGSRSLTMDDEKPWRRTMPSKKARATEAVVYG*PRAMKCAYMDKRSTTVRMMDLPPTL 247
                SRS T       R   P+++   T + V    R+   A    RS +          
Sbjct: 597  ARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSRS---------- 646

Query: 246  GRPSMKSIEISAHTWEGTSSGCSR-PAGRSVSVLFRWHVTHDRTQSRTIAPSPGM*KSAR 70
              P+ +S    + T        SR PA RS     R      R++SRT A      +S  
Sbjct: 647  RTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARRRSRSRSLV 706

Query: 69   RRWR 58
            RR R
Sbjct: 707  RRGR 710
to top
>Q12968:NFAC3_HUMAN Nuclear factor of activated T-cells, cytoplasmic 3 - Homo sapiens|
            (Human)
          Length = 1075

 Score = 32.7 bits (73), Expect = 4.2
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 258  ASPSSSRWLTAYPCTRTSSPWVIHIQPPPWRGPSS-TASSASTVFRRPSSAIVIPCSRDM 434
            ASP++S  L + P +   SP    +QP P++ PSS TASS S   R  S           
Sbjct: 926  ASPAASHPLASSPLSGPPSP---QLQPMPYQSPSSGTASSPSPATRMHSGQHSTQAQSTG 982

Query: 435  SGGIS 449
             GG+S
Sbjct: 983  QGGLS 987
to top
>Q8IYF1:ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 - Homo sapiens|
            (Human)
          Length = 753

 Score = 32.7 bits (73), Expect = 4.2
 Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
 Frame = -2

Query: 1172 HCTKTCQTPRRCCACSTFATCAEAGRRRHPK*EEGPASLQEGP----------RGRPSVS 1023
            H     + PR    C   A  A++GR R       P  + EGP          RG    +
Sbjct: 143  HPRSHSREPRAERKCPRIAP-ADSGRYRASPTRTAPLRMPEGPEPAAPGKQPGRGHTHAA 201

Query: 1022 RHG--IRSGGENQLAAPSGMRVCRHAPAHERDRRSEVPICA---WSAGPEIA*SCGEGAA 858
            + G  +  G + Q   P G  V  H+  H+  R+ + P+CA   W + P +      GA 
Sbjct: 202  QGGPLLCPGCQGQ---PQGKAVVSHSKGHKSSRQEKRPLCAQGDWHS-PTLIREKSCGAC 257

Query: 857  TPNRQPRTP 831
                 PR P
Sbjct: 258  LREETPRMP 266
to top
>P16230:SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein|
            precursor - Oryctolagus cuniculus (Rabbit)
          Length = 852

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
 Frame = -2

Query: 1016 GIRSGGENQLAAPSGMRVCRHAP-------AHERDRRSEVPICAWSAGPEIA*SCGEG-A 861
            G   GGE +L   +G  V  H P        H  + ++EVP        +   S   G  
Sbjct: 561  GEEEGGEEELTVKAGHHVASHPPPGHRSREGHAEEHQTEVPGHHQHRMGDTDTSAERGHP 620

Query: 860  ATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQPECRRGCGVSRPPSRTEPSQ 699
            A+  RQ   PP D  H     L   +G ++  P    + G  V R  S  E  Q
Sbjct: 621  ASSPRQQGHPPEDTVHHHRGSLKEEVGPESPGP-AGVKDGSRVKRGGSEEEEEQ 673
to top
>P04585:POL_HV1H2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate|
            HXB2 group M subtype B) (HIV-1)
          Length = 1435

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 2/166 (1%)
 Frame = +2

Query: 38   HEGVQKTLHRLRADFYIPGDGAMVRDWVRSCVTCQRNKTETLRPAGLLQPLDVPSQVWAD 217
            HE        + +DF +P    + ++ V SC  CQ      L+   +   +D    +W  
Sbjct: 1159 HEKYHSNWRAMASDFNLPP--VVAKEIVASCDKCQ------LKGEAMHGQVDCSPGIW-Q 1209

Query: 218  ISMDFIEGLPKVGGKSIILTVVDRLSMYAHFIALGHPYTTASVARAFFDGIVRLHGF--S 391
            +    +EG        +IL  V   S Y     +  P  T      F   +++L G    
Sbjct: 1210 LDCTHLEG-------KVILVAVHVASGYIEAEVI--PAETGQETAYF---LLKLAGRWPV 1257

Query: 392  SSIVSDRDPVFTGHVWRDLFRLAGVKLRMSTAFHPQTDGQSEVVNK 529
             +I +D    FTG   R     AG+K      ++PQ+ G  E +NK
Sbjct: 1258 KTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNK 1303
to top
>P01045:KNG2_BOVIN Kininogen-2 precursor - Bos taurus (Bovine)|
          Length = 619

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 379 EADDAVEEGPRHGGGCIWMTQGDEVRVHG*AV--NHREDDGLAAHLGKALDEVHR 221
           E D   E+GP HG G  W   G ++++HG  +   H+ D G   H    L   H+
Sbjct: 413 ERDSGKEQGPTHGHG--W-DHGKQIKLHGLGLGHKHKHDQGHGHHRSHGLGHGHQ 464
to top
>Q96JH8:K1849_HUMAN Uncharacterized protein KIAA1849 - Homo sapiens (Human)|
          Length = 1073

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 36/142 (25%), Positives = 45/142 (31%), Gaps = 17/142 (11%)
 Frame = -2

Query: 1049 GPRGRPSVSRHGIRSGGENQLAAPSGMRVCRHAPAHERDRRSEVPICAWSAGPEIA*SCG 870
            G R R S    G    G +Q   P GM    H            P+     GP       
Sbjct: 807  GLRSRASPGSPGRPGSGASQPVCPEGMH---HVVLDGHLEAPSCPLAPRDPGPAAREVAP 863

Query: 869  E----------GAATPNRQPRT------PPRDDEHRSTSELAVVLGEDAGVPQ-PECRRG 741
            E            A P RQP        PP  D     +  +  LG + G P  PE    
Sbjct: 864  ERTLPLRGAPWAQAPPGRQPGRGGSQAGPPHTDSSCLLTPPSTPLGPEPGDPDWPESGGP 923

Query: 740  CGVSRPPSRTEPSQARKGASPE 675
            CG + P  +       +GA+PE
Sbjct: 924  CGKALPERQRNGLSGLRGAAPE 945
to top
>Q8VHS5:ASB16_MOUSE Ankyrin repeat and SOCS box protein 16 - Mus musculus (Mouse)|
          Length = 453

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 282 LTAYPCTRTSSPWVIHIQPPPWRGPSSTASSASTVFRRP 398
           L AYPC  +  PWV  + P  W+   +  SSA ++  +P
Sbjct: 370 LNAYPCVPSCDPWVEAVLPELWQEHEAFYSSALSMENQP 408
to top
>P05205:HP1_DROME Heterochromatin protein 1 - Drosophila melanogaster (Fruit fly)|
          Length = 206

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +1

Query: 1114 VAKVLQAQQRRGVWHVLVQWTGLPEEEATWE---KLD--DFRQQFPDVQLEDELFEKAGR 1278
            V K++  + R+G     ++W G PE E TWE    LD  D  QQ+   + ++E    + +
Sbjct: 26   VEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASRKDEEKSAASKK 85

Query: 1279 D 1281
            D
Sbjct: 86   D 86
to top
>Q9NRJ2:CI031_HUMAN Putative uncharacterized protein C9orf31 - Homo sapiens (Human)|
          Length = 163

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
 Frame = +1

Query: 805  VLRCSSSRGGVRGWRLGVAAPSP------QDHAISGPALQAQIGTSLRRSLS----CAGA 954
            +L+  S +    GW  G+ APSP      QDH  S     ++ G   RR+LS     +G 
Sbjct: 66   LLKSHSKQPAQPGWEPGIRAPSPVPASSLQDH--SRLTSLSRTGKEQRRTLSLIRKTSGT 123

Query: 955  CRHTRIPLGAASWFSPPLRIPCRLTEGLPR 1044
               + +   AAS    P R+P     G  R
Sbjct: 124  PTESTVATAAASTTEVPSRLPWAARAGFKR 153
to top
>Q9ULL5:PRR12_HUMAN Proline-rich protein 12 - Homo sapiens (Human)|
          Length = 1215

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = -2

Query: 971  MRVCRHAPAHERDRRSEVPICAWSAGPEIA*SCGEGAATPNRQPRTPPRDDE-HRSTSEL 795
            +RVC   P H    R  VP+   S   +   S G  +A P + P  PP+ +   ++TSE 
Sbjct: 838  VRVCARKPWH----RPPVPVRR-SGQAKNPVSAGGSSAPPPKAPAPPPKPETPEKTTSEK 892

Query: 794  AVVLGEDAGVPQPECRRGCGVSRPPSR-TEPSQARKGASPEVGAR 663
                  +  +P+P       + RP  +  E  +  +G  P  G R
Sbjct: 893  PPEQTPETAMPEPPAPEKPSLLRPVEKEKEKEKVTRGERPLRGER 937
to top
>P20909:COBA1_RAT Collagen alpha-1(XI) chain precursor - Rattus norvegicus (Rat)|
          Length = 482

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 776 DAGVPQPECRRGCGVSRPP--SRTEPSQARKGASPEVGARRPPRKAWCAG 633
           +AG P P  +RG     PP  S +E  Q  KGA  E GA  PP K    G
Sbjct: 28  EAGPPGPPGKRG-----PPGASGSEGGQGEKGAKGEAGAEGPPGKTGPVG 72
to top
>Q9RDE2:TRI1_STRCO Tricorn protease homolog 1 - Streptomyces coelicolor|
          Length = 1067

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 273 RMMDLPPTLGRPSMKSIEISAHTWEGTSSGCSRPAGRSVSVLFRWH-VTHDRTQSRTIAP 97
           R +D+     R  ++S  ++A  W G++S      G +V+V    H VTH    +R +A 
Sbjct: 268 RRLDIRLGGARVDLQSYPVNAARWFGSASPDHTARGSAVAVRGGVHWVTHRSGPARALAA 327

Query: 96  SPGM*KSARRRWRV 55
           +PG+     R +RV
Sbjct: 328 TPGVRNRLPRTFRV 341
to top
>O52547:RIFF_AMYMD 3-amino-5-hydroxybenzoic acid synthase - Amycolatopsis mediterranei|
            (Nocardia mediterranei)
          Length = 260

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 1132 AQQRRGV---WHVLVQWTGLPEEEATWEKLDD-FRQQFPDVQLEDELFEKAGRDVMTGTT 1299
            A QRRG    W V+  +T  P + + W++L+D FR    D    D      GR    G  
Sbjct: 162  ALQRRGAVTRWSVVYTFTTQPRQWSDWKELEDNFRALVGDTTRTDTQETLCGRAFANGQV 221

Query: 1300 YQRRR 1314
            + R+R
Sbjct: 222  FLRQR 226
to top
>Q06A37:CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 - Gallus gallus (Chicken)|
          Length = 3011

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 1150 VWHVLVQWTGLPEEEATWEKLDDFRQ 1227
            V H LV+W  LP E++TWE   D  Q
Sbjct: 902  VTHYLVKWCSLPYEDSTWELKQDIDQ 927
to top
>Q12873:CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 - Homo sapiens (Human)|
          Length = 2000

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 1141 RRGVWHVLVQWTGLPEEEATWEK----LDDFRQQFPDVQLEDELFEKAGRDVMTGTTYQR 1308
            ++G +H LV+W  LP +++TWE+    + ++ +         EL    G D      Y++
Sbjct: 643  KKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRELI--MGEDPAQPRKYKK 700

Query: 1309 RRPNGQG 1329
            ++   QG
Sbjct: 701  KKKELQG 707
to top
>P60469:LIPA3_MOUSE Liprin-alpha-3 - Mus musculus (Mouse)|
          Length = 1043

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -2

Query: 866 GAATPNRQPRTPPRDDEHRSTSELAVVLGEDAGVPQPECRRGCGVSRPPS-------RTE 708
           G +TP   P +P R+     T +   V  E+AGVP+ E     G + PP+       R  
Sbjct: 522 GHSTPRLAPPSPARE----GTDKTNHVSKEEAGVPRGEGPAVPGDTPPPTPRSARLERMA 577

Query: 707 PSQARKGASPEVGARRPPR 651
            + A +  SPE GA  PPR
Sbjct: 578 QALALQAGSPEDGA--PPR 594
to top
>P01044:KNG1_BOVIN Kininogen-1 precursor - Bos taurus (Bovine)|
          Length = 621

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 379 EADDAVEEGPRHGGGCIWMTQGDEVRVHG*AV--NHREDDGLAAHLGKALDEVHR 221
           E D   E+GP HG G  W   G ++++HG  +   H+ D G   H    L   H+
Sbjct: 415 ERDSGKEQGPTHGHG--W-DHGKQIKLHGLGLGHKHKHDQGHGHHGSHGLGHGHQ 466
to top
>Q9Y2K7:JHD1A_HUMAN JmjC domain-containing histone demethylation protein 1A - Homo|
            sapiens (Human)
          Length = 1162

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
 Frame = -3

Query: 568  TITSNTTQVHGDHLVDHLGLAVCLRVERRAHAELHARQSKEIPPDMSREHGITIADDGRR 389
            T+   T ++HG  +V  L          R    +  +      P    E G+   ++   
Sbjct: 802  TLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHCPARTPQRGDEEGLGGEEEEEE 861

Query: 388  KTVEADDAVEEG--PRHGGGCIWMTQGDE 308
            +  E DD+ EEG   R  G   W   GDE
Sbjct: 862  EEEEEDDSAEEGGAARLNGRGSWAQDGDE 890
to top
>Q61245:COBA1_MOUSE Collagen alpha-1(XI) chain precursor - Mus musculus (Mouse)|
          Length = 1804

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 776  DAGVPQPECRRGCGVSRPP--SRTEPSQARKGASPEVGARRPPRKAWCAG 633
            +AG P P  +RG     PP  S +E  Q  KGA  E GA  PP K    G
Sbjct: 1350 EAGPPGPPGKRG-----PPGASGSEGRQGEKGAKGEAGAEGPPGKTGPVG 1394
to top
>Q339W7:LHP1_ORYSJ Probable protein LIKE HETEROCHROMATIN PROTEIN1 - Oryza sativa subsp.|
            japonica (Rice)
          Length = 415

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 1111 QVAKVLQAQQRRGVWHVLVQWTGLPEEEATWEKLDD 1218
            ++  + + + R+G    LV+W G PE   TWE L++
Sbjct: 108  EIEDIRRRRLRKGKLQYLVKWRGWPESANTWEPLEN 143
to top
>A2AJK6:CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 - Mus musculus (Mouse)|
          Length = 2986

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 1150 VWHVLVQWTGLPEEEATWEKLDDFRQ 1227
            V H LV+W  LP E++TWE   D  Q
Sbjct: 891  VIHYLVKWCSLPYEDSTWELKQDIDQ 916
to top
>Q8VDS3:CBX7_MOUSE Chromobox protein homolog 7 - Mus musculus (Mouse)|
          Length = 158

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 1114 VAKVLQAQQRRGVWHVLVQWTGLPEEEATWEKLDDFRQQFPDVQLEDELFEKAGRDVMTG 1293
            V  + + + R+G    LV+W G P + +TWE      +   D +L     EK  RD  +G
Sbjct: 13   VESIRKKRVRKGKVEYLVKWKGWPPKYSTWEP----EEHILDPRLVMAYEEKEERDRASG 68

Query: 1294 TTYQRRRP 1317
              Y++R P
Sbjct: 69   --YRKRGP 74
to top
>O95931:CBX7_HUMAN Chromobox protein homolog 7 - Homo sapiens (Human)|
          Length = 251

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 1114 VAKVLQAQQRRGVWHVLVQWTGLPEEEATWEKLDDFRQQFPDVQLEDELFEKAGRDVMTG 1293
            V  + + + R+G    LV+W G P + +TWE      +   D +L     EK  RD  +G
Sbjct: 13   VESIRKKRVRKGKVEYLVKWKGWPPKYSTWEP----EEHILDPRLVMAYEEKEERDRASG 68

Query: 1294 TTYQRRRP 1317
              Y++R P
Sbjct: 69   --YRKRGP 74


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 304,157,286
Number of extensions: 7389689
Number of successful extensions: 23776
Number of sequences better than 10.0: 68
Number of HSP's gapped: 23702
Number of HSP's successfully gapped: 70
Length of query: 509
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 391
Effective length of database: 68,319,629
Effective search space: 26712974939
Effective search space used: 26712974939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top