ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf125o05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001062799.1| Oryza sativa (japonica cultivar-group) Os05g0553700 (Os05g0553700) mRNA, complete cds Length = 1250 Score = 906 bits (457), Expect = 0.0 Identities = 731/821 (89%), Gaps = 6/821 (0%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 137 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 196 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 256 Query: 258 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 317 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 257 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 316 Query: 318 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 377 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 317 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 376 Query: 378 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 437 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 377 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 436 Query: 438 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 497 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 437 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 496 Query: 498 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 557 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 497 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 553 Query: 558 aggatcccgttctggtggaggcgtcaagttcgactctacttctgatggaaactttgatga 617 |||||||||| ||||||||| | | ||||| ||| ||||||||||| ||||||||||| Sbjct: 554 aggatcccgtactggtggagccattaagtttgac---acttctgatggcaactttgatga 610 Query: 618 cgagtactttaaggggactgaagaatcaaacaagtttcgtcaggaatatgagatgcgtag 677 |||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| | Sbjct: 611 tgagtactttaagggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaa 670 Query: 678 aatgaagcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacat 737 |||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| ||||| Sbjct: 671 aatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacat 730 Query: 738 ggcatcggatatgaacgaggaattggataggcaagttcccttgatggatgaaatggatga 797 |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| || Sbjct: 731 ggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacga 790 Query: 798 caaggtggatcgagccaatgcagatctgaagaacaccaacgtgagactgaaacagactat 857 ||||||||| ||||||| ||||| ||||||| |||||||| ||||| ||| |||| | Sbjct: 791 gaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgt 850 Query: 858 tcttcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatact 917 ||||||| ||||||| ||||||||||||||||| || || |||||||||||||| || || Sbjct: 851 tcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattct 910 Query: 918 tggtatcgctgcctacctttacaatgtgctcaagaagtgag 958 |||||| || || || ||||||||||| || || ||||||| Sbjct: 911 tggtattgcggcttatctttacaatgttctaaaaaagtgag 951
>dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M14, full insert sequence Length = 1236 Score = 906 bits (457), Expect = 0.0 Identities = 731/821 (89%), Gaps = 6/821 (0%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 123 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 182 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 242 Query: 258 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 317 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 243 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 302 Query: 318 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 377 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 303 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 362 Query: 378 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 437 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 363 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 422 Query: 438 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 497 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 423 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 482 Query: 498 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 557 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 483 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 539 Query: 558 aggatcccgttctggtggaggcgtcaagttcgactctacttctgatggaaactttgatga 617 |||||||||| ||||||||| | | ||||| ||| ||||||||||| ||||||||||| Sbjct: 540 aggatcccgtactggtggagccattaagtttgac---acttctgatggcaactttgatga 596 Query: 618 cgagtactttaaggggactgaagaatcaaacaagtttcgtcaggaatatgagatgcgtag 677 |||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| | Sbjct: 597 tgagtactttaagggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaa 656 Query: 678 aatgaagcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacat 737 |||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| ||||| Sbjct: 657 aatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacat 716 Query: 738 ggcatcggatatgaacgaggaattggataggcaagttcccttgatggatgaaatggatga 797 |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| || Sbjct: 717 ggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacga 776 Query: 798 caaggtggatcgagccaatgcagatctgaagaacaccaacgtgagactgaaacagactat 857 ||||||||| ||||||| ||||| ||||||| |||||||| ||||| ||| |||| | Sbjct: 777 gaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgt 836 Query: 858 tcttcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatact 917 ||||||| ||||||| ||||||||||||||||| || || |||||||||||||| || || Sbjct: 837 tcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattct 896 Query: 918 tggtatcgctgcctacctttacaatgtgctcaagaagtgag 958 |||||| || || || ||||||||||| || || ||||||| Sbjct: 897 tggtattgcggcttatctttacaatgttctaaaaaagtgag 937
>dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N20, full insert sequence Length = 1227 Score = 906 bits (457), Expect = 0.0 Identities = 731/821 (89%), Gaps = 6/821 (0%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 114 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 173 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 233 Query: 258 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 317 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 234 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 293 Query: 318 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 377 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 294 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 353 Query: 378 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 437 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 354 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 413 Query: 438 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 497 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 414 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 473 Query: 498 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 557 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 474 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 530 Query: 558 aggatcccgttctggtggaggcgtcaagttcgactctacttctgatggaaactttgatga 617 |||||||||| ||||||||| | | ||||| ||| ||||||||||| ||||||||||| Sbjct: 531 aggatcccgtactggtggagccattaagtttgac---acttctgatggcaactttgatga 587 Query: 618 cgagtactttaaggggactgaagaatcaaacaagtttcgtcaggaatatgagatgcgtag 677 |||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| | Sbjct: 588 tgagtactttaagggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaa 647 Query: 678 aatgaagcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacat 737 |||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| ||||| Sbjct: 648 aatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacat 707 Query: 738 ggcatcggatatgaacgaggaattggataggcaagttcccttgatggatgaaatggatga 797 |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| || Sbjct: 708 ggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacga 767 Query: 798 caaggtggatcgagccaatgcagatctgaagaacaccaacgtgagactgaaacagactat 857 ||||||||| ||||||| ||||| ||||||| |||||||| ||||| ||| |||| | Sbjct: 768 gaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgt 827 Query: 858 tcttcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatact 917 ||||||| ||||||| ||||||||||||||||| || || |||||||||||||| || || Sbjct: 828 tcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattct 887 Query: 918 tggtatcgctgcctacctttacaatgtgctcaagaagtgag 958 |||||| || || || ||||||||||| || || ||||||| Sbjct: 888 tggtattgcggcttatctttacaatgttctaaaaaagtgag 928
>dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127N02, full insert sequence Length = 1252 Score = 902 bits (455), Expect = 0.0 Identities = 720/807 (89%), Gaps = 6/807 (0%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 138 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 197 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 Query: 258 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgag 317 ||||||||||||| |||||||||| ||| | | ||||| ||||||||||||||||||| Sbjct: 258 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaa 317 Query: 318 gcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggc 377 ||||||||||||||| ||| |||| |||||||||||||| |||||||| || ||||||| Sbjct: 318 gcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggc 377 Query: 378 caagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagg 437 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 378 caagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagg 437 Query: 438 gctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctgatagaat 497 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 438 gctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaat 497 Query: 498 tcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggggagcctc 557 ||||||||||| ||||||||||| | ||||||||||||| |||||| ||||| Sbjct: 498 acaatcaataccagatggtagttcaagtg---caaagaaaaatgggacttggggcgcctc 554 Query: 558 aggatcccgttctggtggaggcgtcaagttcgactctacttctgatggaaactttgatga 617 |||||||||| ||||||||| | | ||||| ||| ||||||||||| ||||||||||| Sbjct: 555 aggatcccgtactggtggagccattaagtttgac---acttctgatggcaactttgatga 611 Query: 618 cgagtactttaaggggactgaagaatcaaacaagtttcgtcaggaatatgagatgcgtag 677 |||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| | Sbjct: 612 tgagtactttaagggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaa 671 Query: 678 aatgaagcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacat 737 |||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| ||||| Sbjct: 672 aatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacat 731 Query: 738 ggcatcggatatgaacgaggaattggataggcaagttcccttgatggatgaaatggatga 797 |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| || Sbjct: 732 ggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacga 791 Query: 798 caaggtggatcgagccaatgcagatctgaagaacaccaacgtgagactgaaacagactat 857 ||||||||| ||||||| ||||| ||||||| |||||||| ||||| ||| |||| | Sbjct: 792 gaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgt 851 Query: 858 tcttcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatact 917 ||||||| ||||||| ||||||||||||||||| || || |||||||||||||| || || Sbjct: 852 tcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattct 911 Query: 918 tggtatcgctgcctacctttacaatgt 944 |||||| || || || ||||||||||| Sbjct: 912 tggtattgcggcttatctttacaatgt 938
>gb|AY107058.1| Zea mays PCO100771 mRNA sequence Length = 737 Score = 585 bits (295), Expect = e-163 Identities = 481/543 (88%) Strand = Plus / Plus Query: 131 atcgggccgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccaga 190 |||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct: 195 atcggggcgcgaggatgaccgtgatcgacatcctcacccgggtggacgcgatctgccaga 254 Query: 191 agtacgacaagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggacccct 250 |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 255 agtacgacaagtacgacgtcgacaagctcaacggcgccaacgtcgccggcgacgacccgt 314 Query: 251 tcgcccgcctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggagg 310 ||||||||||||||| ||||||||||| || ||| ||| ||||| || |||||||| Sbjct: 315 tcgcccgcctctacgcgtccgtcgacgcggacatcaaccaatgcgtcgataaagcggaaa 374 Query: 311 cggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgcg 370 |||||| ||| |||||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct: 375 cggcgaagcaagagaagaaccgggccgcggtggtggcgcttaacgccgagatccggcgca 434 Query: 371 ccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaagg 430 |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| Sbjct: 435 ccaaggccaagctcctcgaggaggaccttcccaagctgcagcgcctcgccgttaagaagg 494 Query: 431 tcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacctg 490 | |||||||| |||| ||| ||| ||||||||||||||||||||||||| || ||||||| Sbjct: 495 tgaaagggctgacaagagaagaaattgcgacccgtagtgatctggttgccgctttacctg 554 Query: 491 atagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggttggg 550 | ||||| |||||||| || |||||||||||| | || ||||||||||||||| |||||| Sbjct: 555 acagaatacaatcaatcccagatggtagttctactgccacaaagaaaaatggaagttggg 614 Query: 551 gagcctcaggatcccgttctggtggaggcgtcaagttcgactctacttctgatggaaact 610 ||||||||||||| || |||| |||| | | ||||||||||||||| |||||||||||| Sbjct: 615 gagcctcaggatctcgcactggaggagccataaagttcgactctactgctgatggaaact 674 Query: 611 ttgatgacgagtactttaaggggactgaagaatcaaacaagtttcgtcaggaatatgaga 670 ||||||| ||||||||||||||||| |||||||| || |||| |||| ||||||||||| Sbjct: 675 ttgatgatgagtactttaaggggacagaagaatctaatcagttccgtcgggaatatgaga 734 Query: 671 tgc 673 ||| Sbjct: 735 tgc 737
>dbj|AK240766.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J053058F10, full insert sequence Length = 1184 Score = 375 bits (189), Expect = e-100 Identities = 321/365 (87%) Strand = Plus / Plus Query: 151 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 210 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 205 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 264 Query: 211 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 270 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 265 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 324 Query: 271 gtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcgaggcaggagaagaac 330 |||||||| || || | | ||| | ||||||||||||||||||| ||||||||||||| Sbjct: 325 gtcgacgctgacctcaacgaatgcctcgagaaagcggaggcggcgaagcaggagaagaac 384 Query: 331 cgggccgcggtcgtcgcgctcaacgccgagatccgccgcgccaaggccaagctcctcgag 390 || ||| |||| |||||||| ||||| ||||||||| | | |||||||||||||||||| Sbjct: 385 cgcgccacggtggtcgcgctgaacgcggagatccgcggaacgaaggccaagctcctcgag 444 Query: 391 gaggacctgcccaagctgcagcgcctcgcgctcaagaaggtcaaagggctcacaaaagag 450 ||||| ||||||||||||||||| ||||| || |||||||| |||||||| ||||||| Sbjct: 445 gaggatctgcccaagctgcagcggctcgccctgaagaaggttaaagggctttcaaaagaa 504 Query: 451 gaacttgcgacccgtagtgatctggttgctgccttacctgatagaattcaatcaataccg 510 |||||||| | |||| ||||||||||| |||||||||||||||| ||||| |||||||| Sbjct: 505 gaacttgcaatccgtggtgatctggttactgccttacctgataggattcagtcaatacca 564 Query: 511 gatgg 515 ||||| Sbjct: 565 gatgg 569
>ref|NM_001050430.1| Oryza sativa (japonica cultivar-group) Os01g0685200 (Os01g0685200) mRNA, complete cds Length = 1440 Score = 305 bits (154), Expect = 2e-79 Identities = 283/326 (86%) Strand = Plus / Plus Query: 190 aagtacgacaagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggacccc 249 ||||||| || ||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct: 571 aagtacggcaggtacgacgccgagaagctccacggctccggcgtcgccggcgaggacccc 630 Query: 250 ttcgcccgcctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggag 309 ||||| |||||||||| ||| |||||||| || || | | ||| | |||||||||||| Sbjct: 631 ttcgcgcgcctctacgcctcggtcgacgctgacctcaacgaatgcctcgagaaagcggag 690 Query: 310 gcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccgagatccgccgc 369 ||||||| ||||||||||||||| ||| |||| |||||||| ||||| ||||||||| | Sbjct: 691 gcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcggagatccgcgga 750 Query: 370 gccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcgcgctcaagaag 429 | ||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||| Sbjct: 751 acgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcgccctgaagaag 810 Query: 430 gtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttacct 489 || |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||||| Sbjct: 811 gttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttacct 870 Query: 490 gatagaattcaatcaataccggatgg 515 ||||| ||||| |||||||| ||||| Sbjct: 871 gataggattcagtcaataccagatgg 896
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 222 bits (112), Expect = 2e-54 Identities = 136/144 (94%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 185035 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 185094 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 185095 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 185154 Query: 258 cctctacggctccgtcgacgccga 281 ||||||||||||| |||||||||| Sbjct: 185155 cctctacggctccatcgacgccga 185178 Score = 184 bits (93), Expect = 5e-43 Identities = 123/133 (92%) Strand = Plus / Plus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| | Sbjct: 185297 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcgg 185356 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 185357 agatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcg 185416 Query: 419 cgctcaagaaggt 431 |||| |||||||| Sbjct: 185417 cgctgaagaaggt 185429 Score = 167 bits (84), Expect = 1e-37 Identities = 134/150 (89%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 428 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 487 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 186297 aggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttac 186356 Query: 488 ctgatagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggtt 547 | |||||||| ||||||||||| ||||||||||| | ||||||||||||| || Sbjct: 186357 ccgatagaatacaatcaataccagatggtagttcaagtg---caaagaaaaatgggactt 186413 Query: 548 ggggagcctcaggatcccgttctggtggag 577 |||| ||||||||||||||| ||||||||| Sbjct: 186414 ggggcgcctcaggatcccgtactggtggag 186443 Score = 99.6 bits (50), Expect = 2e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 684 gcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacatggcatc 743 ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| Sbjct: 187349 gcaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatc 187408 Query: 744 ggatatgaacgagg 757 |||||||| |||| Sbjct: 187409 tgatatgaatgagg 187422 Score = 95.6 bits (48), Expect = 4e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 601 gatggaaactttgatgacgagtactttaaggggactgaagaatcaaacaagtttcgtcag 660 ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||| | Sbjct: 187156 gatggcaactttgatgatgagtactttaagggaacagaagaatcaaatcagtttcgtcgg 187215 Query: 661 gaatatgagatgcgtagaatgaagcagg 688 |||||||||||||| | |||||| |||| Sbjct: 187216 gaatatgagatgcgcaaaatgaaacagg 187243 Score = 73.8 bits (37), Expect = 1e-09 Identities = 46/49 (93%) Strand = Plus / Plus Query: 755 aggaattggataggcaagttcccttgatggatgaaatggatgacaaggt 803 ||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct: 187515 aggaactggataggcaagttcccttgatggatgaaatggacgagaaggt 187563 Score = 73.8 bits (37), Expect = 1e-09 Identities = 70/81 (86%) Strand = Plus / Plus Query: 861 tcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||| ||||||| ||||||||||||||||| || || |||||||||||||| || ||||| Sbjct: 187812 tcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttgg 187871 Query: 921 tatcgctgcctacctttacaa 941 ||| || || || |||||||| Sbjct: 187872 tattgcggcttatctttacaa 187892
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 222 bits (112), Expect = 2e-54 Identities = 136/144 (94%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 22524 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 22583 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 22584 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 22643 Query: 258 cctctacggctccgtcgacgccga 281 ||||||||||||| |||||||||| Sbjct: 22644 cctctacggctccatcgacgccga 22667 Score = 184 bits (93), Expect = 5e-43 Identities = 123/133 (92%) Strand = Plus / Plus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| | Sbjct: 22786 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcgg 22845 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 22846 agatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcg 22905 Query: 419 cgctcaagaaggt 431 |||| |||||||| Sbjct: 22906 cgctgaagaaggt 22918 Score = 167 bits (84), Expect = 1e-37 Identities = 134/150 (89%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 428 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 487 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 23786 aggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttac 23845 Query: 488 ctgatagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggtt 547 | |||||||| ||||||||||| ||||||||||| | ||||||||||||| || Sbjct: 23846 ccgatagaatacaatcaataccagatggtagttcaagtg---caaagaaaaatgggactt 23902 Query: 548 ggggagcctcaggatcccgttctggtggag 577 |||| ||||||||||||||| ||||||||| Sbjct: 23903 ggggcgcctcaggatcccgtactggtggag 23932 Score = 99.6 bits (50), Expect = 2e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 684 gcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacatggcatc 743 ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| Sbjct: 24838 gcaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatc 24897 Query: 744 ggatatgaacgagg 757 |||||||| |||| Sbjct: 24898 tgatatgaatgagg 24911 Score = 95.6 bits (48), Expect = 4e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 601 gatggaaactttgatgacgagtactttaaggggactgaagaatcaaacaagtttcgtcag 660 ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||| | Sbjct: 24645 gatggcaactttgatgatgagtactttaagggaacagaagaatcaaatcagtttcgtcgg 24704 Query: 661 gaatatgagatgcgtagaatgaagcagg 688 |||||||||||||| | |||||| |||| Sbjct: 24705 gaatatgagatgcgcaaaatgaaacagg 24732 Score = 73.8 bits (37), Expect = 1e-09 Identities = 46/49 (93%) Strand = Plus / Plus Query: 755 aggaattggataggcaagttcccttgatggatgaaatggatgacaaggt 803 ||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct: 25004 aggaactggataggcaagttcccttgatggatgaaatggacgagaaggt 25052 Score = 73.8 bits (37), Expect = 1e-09 Identities = 70/81 (86%) Strand = Plus / Plus Query: 861 tcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||| ||||||| ||||||||||||||||| || || |||||||||||||| || ||||| Sbjct: 25301 tcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttgg 25360 Query: 921 tatcgctgcctacctttacaa 941 ||| || || || |||||||| Sbjct: 25361 tattgcggcttatctttacaa 25381
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 222 bits (112), Expect = 2e-54 Identities = 136/144 (94%) Strand = Plus / Plus Query: 138 cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 197 |||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 27310067 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 27310126 Query: 198 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 27310127 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 27310186 Query: 258 cctctacggctccgtcgacgccga 281 ||||||||||||| |||||||||| Sbjct: 27310187 cctctacggctccatcgacgccga 27310210 Score = 184 bits (93), Expect = 5e-43 Identities = 123/133 (92%) Strand = Plus / Plus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| | Sbjct: 27310329 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcgg 27310388 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 27310389 agatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcg 27310448 Query: 419 cgctcaagaaggt 431 |||| |||||||| Sbjct: 27310449 cgctgaagaaggt 27310461 Score = 167 bits (84), Expect = 1e-37 Identities = 134/150 (89%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 428 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 487 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 27311329 aggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttac 27311388 Query: 488 ctgatagaattcaatcaataccggatggtagttcttccgcgacaaagaaaaatggaggtt 547 | |||||||| ||||||||||| ||||||||||| | ||||||||||||| || Sbjct: 27311389 ccgatagaatacaatcaataccagatggtagttcaagtg---caaagaaaaatgggactt 27311445 Query: 548 ggggagcctcaggatcccgttctggtggag 577 |||| ||||||||||||||| ||||||||| Sbjct: 27311446 ggggcgcctcaggatcccgtactggtggag 27311475 Score = 99.6 bits (50), Expect = 2e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 684 gcaggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacatggcatc 743 ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| Sbjct: 27312381 gcaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatc 27312440 Query: 744 ggatatgaacgagg 757 |||||||| |||| Sbjct: 27312441 tgatatgaatgagg 27312454 Score = 95.6 bits (48), Expect = 4e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 601 gatggaaactttgatgacgagtactttaaggggactgaagaatcaaacaagtttcgtcag 660 ||||| ||||||||||| |||||||||||||| || ||||||||||| ||||||||| | Sbjct: 27312188 gatggcaactttgatgatgagtactttaagggaacagaagaatcaaatcagtttcgtcgg 27312247 Query: 661 gaatatgagatgcgtagaatgaagcagg 688 |||||||||||||| | |||||| |||| Sbjct: 27312248 gaatatgagatgcgcaaaatgaaacagg 27312275 Score = 73.8 bits (37), Expect = 1e-09 Identities = 46/49 (93%) Strand = Plus / Plus Query: 755 aggaattggataggcaagttcccttgatggatgaaatggatgacaaggt 803 ||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct: 27312547 aggaactggataggcaagttcccttgatggatgaaatggacgagaaggt 27312595 Score = 73.8 bits (37), Expect = 1e-09 Identities = 70/81 (86%) Strand = Plus / Plus Query: 861 tcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||| ||||||| ||||||||||||||||| || || |||||||||||||| || ||||| Sbjct: 27312844 tcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttgg 27312903 Query: 921 tatcgctgcctacctttacaa 941 ||| || || || |||||||| Sbjct: 27312904 tattgcggcttatctttacaa 27312924
>gb|DQ246135.1| Zea mays clone 93620 mRNA sequence Length = 765 Score = 198 bits (100), Expect = 3e-47 Identities = 136/148 (91%) Strand = Plus / Plus Query: 131 atcgggccgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccaga 190 |||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct: 137 atcggggcgcgaggatgaccgtgatcgacatcctcacccgggtggacgcgatctgccaga 196 Query: 191 agtacgacaagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggacccct 250 |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | Sbjct: 197 agtacgacaagtacgacgtcgacaagctcaacggcgccaacgtcgccggcgacgacccgt 256 Query: 251 tcgcccgcctctacggctccgtcgacgc 278 ||||||||||||||| ||||||||||| Sbjct: 257 tcgcccgcctctacgcgtccgtcgacgc 284 Score = 161 bits (81), Expect = 7e-36 Identities = 111/121 (91%) Strand = Plus / Plus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||| |||||| ||| |||||||||||||||||||| || ||||| ||||||| Sbjct: 390 agaaagcggaaacggcgaagcaagagaagaaccgggccgcggtggtggcgcttaacgccg 449 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 450 agatccggcgcaccaaggccaagctcctcgaggaggaccttcccaagctgcagcgcctcg 509 Query: 419 c 419 | Sbjct: 510 c 510
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 174 bits (88), Expect = 5e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 151 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 210 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 28239314 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 28239255 Query: 211 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 270 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 28239254 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 28239195 Query: 271 gtcgacgc 278 |||||||| Sbjct: 28239194 gtcgacgc 28239187 Score = 153 bits (77), Expect = 2e-33 Identities = 119/133 (89%) Strand = Plus / Minus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||| | Sbjct: 28239046 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcgg 28238987 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 28238986 agatccgcggaacgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcg 28238927 Query: 419 cgctcaagaaggt 431 | || |||||||| Sbjct: 28238926 ccctgaagaaggt 28238914 Score = 87.7 bits (44), Expect = 9e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 428 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 487 |||| |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||| Sbjct: 28237733 aggttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttac 28237674 Query: 488 ctgatagaattcaatcaataccggatgg 515 ||||||| ||||| |||||||| ||||| Sbjct: 28237673 ctgataggattcagtcaataccagatgg 28237646
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 174 bits (88), Expect = 5e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 151 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 210 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 73821 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 73762 Query: 211 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 270 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 73761 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 73702 Query: 271 gtcgacgc 278 |||||||| Sbjct: 73701 gtcgacgc 73694 Score = 153 bits (77), Expect = 2e-33 Identities = 119/133 (89%) Strand = Plus / Minus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||| | Sbjct: 73553 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcgg 73494 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 73493 agatccgcggaacgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcg 73434 Query: 419 cgctcaagaaggt 431 | || |||||||| Sbjct: 73433 ccctgaagaaggt 73421 Score = 87.7 bits (44), Expect = 9e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 428 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 487 |||| |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||| Sbjct: 72240 aggttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttac 72181 Query: 488 ctgatagaattcaatcaataccggatgg 515 ||||||| ||||| |||||||| ||||| Sbjct: 72180 ctgataggattcagtcaataccagatgg 72153
>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445E10 Length = 145912 Score = 174 bits (88), Expect = 5e-40 Identities = 118/128 (92%) Strand = Plus / Minus Query: 151 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 210 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 123308 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 123249 Query: 211 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 270 ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct: 123248 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 123189 Query: 271 gtcgacgc 278 |||||||| Sbjct: 123188 gtcgacgc 123181 Score = 153 bits (77), Expect = 2e-33 Identities = 119/133 (89%) Strand = Plus / Minus Query: 299 agaaagcggaggcggcgaggcaggagaagaaccgggccgcggtcgtcgcgctcaacgccg 358 |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||| | Sbjct: 123040 agaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctgaacgcgg 122981 Query: 359 agatccgccgcgccaaggccaagctcctcgaggaggacctgcccaagctgcagcgcctcg 418 |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 122980 agatccgcggaacgaaggccaagctcctcgaggaggatctgcccaagctgcagcggctcg 122921 Query: 419 cgctcaagaaggt 431 | || |||||||| Sbjct: 122920 ccctgaagaaggt 122908 Score = 87.7 bits (44), Expect = 9e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 428 aggtcaaagggctcacaaaagaggaacttgcgacccgtagtgatctggttgctgccttac 487 |||| |||||||| ||||||| |||||||| | |||| ||||||||||| ||||||||| Sbjct: 121727 aggttaaagggctttcaaaagaagaacttgcaatccgtggtgatctggttactgccttac 121668 Query: 488 ctgatagaattcaatcaataccggatgg 515 ||||||| ||||| |||||||| ||||| Sbjct: 121667 ctgataggattcagtcaataccagatgg 121640
>ref|NM_001069509.1| Oryza sativa (japonica cultivar-group) Os09g0359700 (Os09g0359700) mRNA, complete cds Length = 792 Score = 81.8 bits (41), Expect = 5e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 169 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 217 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 25 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 73
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 81.8 bits (41), Expect = 5e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 169 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 217 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 11646745 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 11646793
>dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0013F08 Length = 166989 Score = 81.8 bits (41), Expect = 5e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 169 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 217 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 162752 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 162800
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 81.8 bits (41), Expect = 5e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 169 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 217 |||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 81379 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 81427
>ref|NM_111809.3| Arabidopsis thaliana SYP71 (SYNTAXIN OF PLANTS 71) (SYP71) mRNA, complete cds Length = 1229 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 728 tgaagaacatggcatcggatatgaacgaggaattggataggcaagttcccttgatggatg 787 ||||||||||||| || ||||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 696 tgaagaacatggcttctgatatgaacgaggaactggatagacaagttccactgatggatg 755 Query: 788 aaat 791 |||| Sbjct: 756 aaat 759
>gb|BT024483.1| Arabidopsis thaliana At3g09740 mRNA, complete cds Length = 801 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 728 tgaagaacatggcatcggatatgaacgaggaattggataggcaagttcccttgatggatg 787 ||||||||||||| || ||||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 575 tgaagaacatggcttctgatatgaacgaggaactggatagacaagttccactgatggatg 634 Query: 788 aaat 791 |||| Sbjct: 635 aaat 638
>gb|AY090358.1| Arabidopsis thaliana AT3g09740/F11F8_33 mRNA, complete cds Length = 1143 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 728 tgaagaacatggcatcggatatgaacgaggaattggataggcaagttcccttgatggatg 787 ||||||||||||| || ||||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 680 tgaagaacatggcttctgatatgaacgaggaactggatagacaagttccactgatggatg 739 Query: 788 aaat 791 |||| Sbjct: 740 aaat 743
>gb|AF355757.1|AF355757 Arabidopsis thaliana syntaxin of plants 71 (SYP71) mRNA, complete cds Length = 1033 Score = 79.8 bits (40), Expect = 2e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 728 tgaagaacatggcatcggatatgaacgaggaattggataggcaagttcccttgatggatg 787 ||||||||||||| || ||||||||||||||| ||||||| |||||||| ||||||||| Sbjct: 612 tgaagaacatggcttctgatatgaacgaggaactggatagacaagttccactgatggatg 671 Query: 788 aaat 791 |||| Sbjct: 672 aaat 675
>emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11 Length = 91274 Score = 58.0 bits (29), Expect = 8e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 860 ttcagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttg 919 |||||||| ||||||| || |||||||||||||||||| | || |||||||| || |||| Sbjct: 42287 ttcagatgcgatccagccgaaacttctgcatcgacattattcttctctgtgtgatccttg 42228 Query: 920 g 920 | Sbjct: 42227 g 42227
>emb|BX822780.1|CNS0A64U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZG09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1147 Score = 56.0 bits (28), Expect = 3e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 728 tgaagaacatggcatcggatatgaacgaggaattggataggcaagttcccttgatggatg 787 ||||||||||||| || |||||||||||||| || ||| |||||||| ||||||||| Sbjct: 679 tgaagaacatggcttctaatatgaacgaggaactgaataaacaagttccactgatggatg 738 Query: 788 aaat 791 |||| Sbjct: 739 aaat 742
>gb|DQ653131.1| Arabidopsis thaliana clone 0000017297_0000012109 unknown mRNA Length = 804 Score = 54.0 bits (27), Expect = 0.001 Identities = 51/59 (86%) Strand = Plus / Plus Query: 862 cagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||||| ||||||| || |||||||||||||||||| | || |||||||| || ||||| Sbjct: 712 cagatgcgatccagccgaaacttctgcatcgacattattcttctctgtgtgatccttgg 770 Score = 42.1 bits (21), Expect = 4.7 Identities = 48/57 (84%) Strand = Plus / Plus Query: 636 tgaagaatcaaacaagtttcgtcaggaatatgagatgcgtagaatgaagcaggatga 692 ||||||||| | | ||||||| || |||||||||||| | |||| ||| |||||||| Sbjct: 486 tgaagaatccagccagtttcgacaagaatatgagatgagaagaaagaaacaggatga 542
>gb|DQ446736.1| Arabidopsis thaliana clone pENTR221-At3g45280 syntaxin 72 (At3g45280) mRNA, complete cds Length = 804 Score = 54.0 bits (27), Expect = 0.001 Identities = 51/59 (86%) Strand = Plus / Plus Query: 862 cagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||||| ||||||| || |||||||||||||||||| | || |||||||| || ||||| Sbjct: 712 cagatgcgatccagccgaaacttctgcatcgacattattcttctctgtgtgatccttgg 770 Score = 42.1 bits (21), Expect = 4.7 Identities = 48/57 (84%) Strand = Plus / Plus Query: 636 tgaagaatcaaacaagtttcgtcaggaatatgagatgcgtagaatgaagcaggatga 692 ||||||||| | | ||||||| || |||||||||||| | |||| ||| |||||||| Sbjct: 486 tgaagaatccagccagtttcgacaagaatatgagatgagaagaaagaaacaggatga 542
>ref|NM_114397.1| Arabidopsis thaliana SYP72 (SYNTAXIN OF PLANTS 72) (SYP72) mRNA, complete cds Length = 872 Score = 54.0 bits (27), Expect = 0.001 Identities = 51/59 (86%) Strand = Plus / Plus Query: 862 cagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||||| ||||||| || |||||||||||||||||| | || |||||||| || ||||| Sbjct: 748 cagatgcgatccagccgaaacttctgcatcgacattattcttctctgtgtgatccttgg 806 Score = 42.1 bits (21), Expect = 4.7 Identities = 48/57 (84%) Strand = Plus / Plus Query: 636 tgaagaatcaaacaagtttcgtcaggaatatgagatgcgtagaatgaagcaggatga 692 ||||||||| | | ||||||| || |||||||||||| | |||| ||| |||||||| Sbjct: 522 tgaagaatccagccagtttcgacaagaatatgagatgagaagaaagaaacaggatga 578
>gb|AF355758.1|AF355758 Arabidopsis thaliana syntaxin of plants 72 (SYP72) mRNA, complete cds Length = 872 Score = 54.0 bits (27), Expect = 0.001 Identities = 51/59 (86%) Strand = Plus / Plus Query: 862 cagatgagatccagtcgcaacttctgcatcgacattgtcctgctctgtgtcatacttgg 920 |||||| ||||||| || |||||||||||||||||| | || |||||||| || ||||| Sbjct: 748 cagatgcgatccagccgaaacttctgcatcgacattattcttctctgtgtgatccttgg 806 Score = 42.1 bits (21), Expect = 4.7 Identities = 48/57 (84%) Strand = Plus / Plus Query: 636 tgaagaatcaaacaagtttcgtcaggaatatgagatgcgtagaatgaagcaggatga 692 ||||||||| | | ||||||| || |||||||||||| | |||| ||| |||||||| Sbjct: 522 tgaagaatccagccagtttcgacaagaatatgagatgagaagaaagaaacaggatga 578
>emb|CT980284.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 903 Score = 50.1 bits (25), Expect = 0.019 Identities = 37/41 (90%) Strand = Plus / Minus Query: 745 gatatgaacgaggaattggataggcaagttcccttgatgga 785 |||||||||||||||||||| ||||| || || |||||||| Sbjct: 337 gatatgaacgaggaattggacaggcaggtccctttgatgga 297 Score = 46.1 bits (23), Expect = 0.30 Identities = 41/47 (87%) Strand = Plus / Minus Query: 235 gccggcgaggaccccttcgcccgcctctacggctccgtcgacgccga 281 |||||||| ||| || ||||||||||||||| | ||||||| ||||| Sbjct: 832 gccggcgaagacgccctcgcccgcctctacgccgccgtcgaggccga 786
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence Length = 110895 Score = 48.1 bits (24), Expect = 0.077 Identities = 60/72 (83%) Strand = Plus / Minus Query: 686 aggatgaaggtttggatgttattggtgaagggctggcaactctgaagaacatggcatcgg 745 ||||||||||||||||||| |||| ||||| ||| ||| |||| ||||||||| | Sbjct: 93618 aggatgaaggtttggatgtgattgcagaaggattggatactttgaaaaacatggcacacg 93559 Query: 746 atatgaacgagg 757 |||||||||||| Sbjct: 93558 atatgaacgagg 93547 Score = 44.1 bits (22), Expect = 1.2 Identities = 31/34 (91%) Strand = Plus / Minus Query: 755 aggaattggataggcaagttcccttgatggatga 788 ||||||| |||||||||||||| |||||||||| Sbjct: 93468 aggaatttgataggcaagttccactgatggatga 93435
>gb|AC189358.1| Brassica rapa subsp. pekinensis clone KBrB044E18, complete sequence Length = 143253 Score = 46.1 bits (23), Expect = 0.30 Identities = 29/31 (93%) Strand = Plus / Plus Query: 866 tgagatccagtcgcaacttctgcatcgacat 896 |||||||||| |||||||||||||| ||||| Sbjct: 20331 tgagatccagccgcaacttctgcatagacat 20361
>ref|NM_116010.1| Arabidopsis thaliana SYP73 (SYNTAXIN OF PLANTS 73) (SYP73) mRNA, complete cds Length = 884 Score = 46.1 bits (23), Expect = 0.30 Identities = 29/31 (93%) Strand = Plus / Plus Query: 866 tgagatccagtcgcaacttctgcatcgacat 896 |||||||||| |||||||||||||| ||||| Sbjct: 765 tgagatccagccgcaacttctgcatagacat 795
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 350 tcaacgccgagatccgccgcgcc 372 ||||||||||||||||||||||| Sbjct: 1668664 tcaacgccgagatccgccgcgcc 1668642
>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19 Length = 95993 Score = 46.1 bits (23), Expect = 0.30 Identities = 29/31 (93%) Strand = Plus / Plus Query: 866 tgagatccagtcgcaacttctgcatcgacat 896 |||||||||| |||||||||||||| ||||| Sbjct: 33916 tgagatccagccgcaacttctgcatagacat 33946
>gb|AF355759.1|AF355759 Arabidopsis thaliana syntaxin of plants 73 (SYP73) mRNA, complete cds Length = 884 Score = 46.1 bits (23), Expect = 0.30 Identities = 29/31 (93%) Strand = Plus / Plus Query: 866 tgagatccagtcgcaacttctgcatcgacat 896 |||||||||| |||||||||||||| ||||| Sbjct: 765 tgagatccagccgcaacttctgcatagacat 795
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 155 tcgacatcctcacgcgggtggacgccatct 184 |||||||||||| ||||||||||| ||||| Sbjct: 638721 tcgacatcctcaagcgggtggacgacatct 638750
>gb|AC117802.9| Mus musculus chromosome 15, clone RP24-560I8, complete sequence Length = 165241 Score = 44.1 bits (22), Expect = 1.2 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1185 catgagtaaattgcctagtaagagta 1210 |||||||||||| ||||||||||||| Sbjct: 72530 catgagtaaatttcctagtaagagta 72555
>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence Length = 107603 Score = 44.1 bits (22), Expect = 1.2 Identities = 28/30 (93%) Strand = Plus / Plus Query: 728 tgaagaacatggcatcggatatgaacgagg 757 ||||||||||||| || ||||||||||||| Sbjct: 89163 tgaagaacatggcttctgatatgaacgagg 89192 Score = 42.1 bits (21), Expect = 4.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 755 aggaattggataggcaagttcccttgatggatgaaat 791 ||||| ||||||| |||||||| ||||||||||||| Sbjct: 89274 aggaactggatagacaagttccactgatggatgaaat 89310
>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete sequence Length = 204907 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 766 aggcaagttcccttgatggatg 787 |||||||||||||||||||||| Sbjct: 64072 aggcaagttcccttgatggatg 64051
>gb|DQ411510.1| Aeromonas veronii strain MDC56 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 858 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 191 agtacgacaagtacgacgccgagaagctc 219 |||||||||||||||| |||||| ||||| Sbjct: 128 agtacgacaagtacgaagccgagcagctc 156
>gb|DQ411511.1| Aeromonas veronii strain MDC57 RNA polymerase sigma-70 factor (rpoD) gene, partial cds Length = 872 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 191 agtacgacaagtacgacgccgagaagctc 219 |||||||||||||||| |||||| ||||| Sbjct: 146 agtacgacaagtacgaagccgagcagctc 174
>gb|DQ773834.1| Synthetic construct Vibrio cholerae clone FLH199777.01F yjeA gene, complete sequence Length = 1050 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 776 ccttgatggatgaaatggatg 796 ||||||||||||||||||||| Sbjct: 449 ccttgatggatgaaatggatg 469
>gb|AE004331.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 239 of 251 of the complete chromosome Length = 13083 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 776 ccttgatggatgaaatggatg 796 ||||||||||||||||||||| Sbjct: 8990 ccttgatggatgaaatggatg 8970
>gb|AY127871.1| Aeromonas culicicola MTCC 3249 clone SLH RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 191 agtacgacaagtacgacgccgagaagctc 219 |||||||||||||||| |||||| ||||| Sbjct: 137 agtacgacaagtacgaagccgagcagctc 165
>gb|AY127870.1| Aeromonas culicicola MTCC 3249 clone SH RNA polymerase sigma factor D gene, partial cds Length = 844 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 191 agtacgacaagtacgacgccgagaagctc 219 |||||||||||||||| |||||| ||||| Sbjct: 137 agtacgacaagtacgaagccgagcagctc 165
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 42.1 bits (21), Expect = 4.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 778 ttgatggatgaaatggatgac 798 ||||||||||||||||||||| Sbjct: 3007132 ttgatggatgaaatggatgac 3007112
>gb|AC084610.1|CBRG44C02 Caenorhabditis briggsae cosmid G44C02, complete sequence Length = 41805 Score = 42.1 bits (21), Expect = 4.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 aagaaggtcaaagggctcacaaaag 448 ||||||||||||||||| ||||||| Sbjct: 23750 aagaaggtcaaagggcttacaaaag 23726
>gb|AY366441.1| Lemur catta microsatellite Lc5 sequence Length = 393 Score = 42.1 bits (21), Expect = 4.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 844 ctgaaacagactattcttcagatgagatc 872 |||||||||||||| ||||||||||||| Sbjct: 365 ctgaaacagactatctttcagatgagatc 393 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 194,190,768 Number of extensions: 12186102 Number of successful extensions: 205927 Number of sequences better than 10.0: 48 Number of HSP's gapped: 205923 Number of HSP's successfully gapped: 89 Length of query: 1248 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1225 Effective length of database: 18,503,978,556 Effective search space: 22667373731100 Effective search space used: 22667373731100 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
