ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf128g02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X79466.1|HVES2A H.vulgare (Dbg 567) ES2A mRNA Length = 793 Score = 1564 bits (789), Expect = 0.0 Identities = 789/789 (100%) Strand = Plus / Plus Query: 13 gaaaagaagaacacaaattattaggcaccaacacttcatcgacttagaaaatgtctagct 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gaaaagaagaacacaaattattaggcaccaacacttcatcgacttagaaaatgtctagct 60 Query: 73 ggttacaagagaagtcgggggaggtggtggagacgacccaagttaaggccggcgaggcca 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggttacaagagaagtcgggggaggtggtggagacgacccaagttaaggccggcgaggcca 120 Query: 133 cgaagatggcgtccgagacggggcagtccatccaggaccgtgccgtcgaggcaaaagacc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cgaagatggcgtccgagacggggcagtccatccaggaccgtgccgtcgaggcaaaagacc 180 Query: 193 agaccggcagcttccttggcgagaaaagcgaggctgtcacgaagtctgcctccgagacta 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agaccggcagcttccttggcgagaaaagcgaggctgtcacgaagtctgcctccgagacta 240 Query: 253 ccgaggcggccaaaaagatgggcggcgaggccatggggaaggtgtccgagacggtgcaag 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccgaggcggccaaaaagatgggcggcgaggccatggggaaggtgtccgagacggtgcaag 300 Query: 313 ccggtcaggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaaga 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccggtcaggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaaga 360 Query: 373 cggaggccgtgaagaagacggccaccgagactgccgacgccgccaaggagaagtccaccg 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 cggaggccgtgaagaagacggccaccgagactgccgacgccgccaaggagaagtccaccg 420 Query: 433 aggccgcgcagcatgtccaggacaccgctgcagagtacaccaaggataccccggtcgccc 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aggccgcgcagcatgtccaggacaccgctgcagagtacaccaaggataccccggtcgccc 480 Query: 493 ccaaggaaaacgtcttccagaaggccggcgggaatattgtgggtgccgctacggacgcca 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ccaaggaaaacgtcttccagaaggccggcgggaatattgtgggtgccgctacggacgcca 540 Query: 553 aggacgctgtcatgaacacgctcgggatgggaggagacaagtgagatgttgatggtgcca 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aggacgctgtcatgaacacgctcgggatgggaggagacaagtgagatgttgatggtgcca 600 Query: 613 ccaagaagatcacaaaggataattagacgcgtctgcgcctgcctgctctttccctccttc 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 ccaagaagatcacaaaggataattagacgcgtctgcgcctgcctgctctttccctccttc 660 Query: 673 cgtttcgttgttctctcgatataatttaaatttcagttccaaggaactaattaatttata 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 cgtttcgttgttctctcgatataatttaaatttcagttccaaggaactaattaatttata 720 Query: 733 cacacgctccttggtgtaactttgtttgatgtatgcgaccgaggtatgaatatattttcc 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 cacacgctccttggtgtaactttgtttgatgtatgcgaccgaggtatgaatatattttcc 780 Query: 793 accaattat 801 ||||||||| Sbjct: 781 accaattat 789
>emb|AJ000100.1|HVAJ100 Hordeum vulgare mRNA for cold-regulated protein, partial Length = 594 Score = 1074 bits (542), Expect = 0.0 Identities = 566/573 (98%), Gaps = 2/573 (0%) Strand = Plus / Plus Query: 229 tcacgaagtctgcctccgagactaccgaggcggccaaaaagatgggcggcgaggccatgg 288 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 1 tcacgaagtctgcctccgagactaccgaggcgaccaaaaagatgggcagcgaggccatgg 60 Query: 289 ggaaggtgtccgagacggtgcaagccggtcaggatcgcgccgtcgagggcaaagaccaga 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggaaggtgtccgagacggtgcaagccggtcaggatcgcgccgtcgagggcaaagaccaga 120 Query: 349 cggccagctttctcggcgagaagacggaggccgtgaagaagacggccaccgagactgccg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cggccagctttctcggcgagaagacggaggccgtgaagaagacggccaccgagactgccg 180 Query: 409 acgccgccaaggagaagtccaccgaggccgcgcagcatgtccaggacaccgctgcagagt 468 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 181 acgccgccaaggagaagtccaccgaggccgcgcagcatgttcaggacaccgctgcagagt 240 Query: 469 acaccaaggataccccggtcgcccccaaggaaaacgtcttccagaaggccggcgggaata 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 acaccaaggataccccggtcgcccccaaggaaaacgtcttccagaaggccggcgggaata 300 Query: 529 ttgtgggtgccgctacggacgccaaggacgctgtcatgaacacgctcgggatgggaggag 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttgtgggtgccgctacggacgccaaggacgctgtcatgaacacgctcgggatgggaggag 360 Query: 589 acaagtgagatgttgatggtgccaccaagaagatcacaaaggataattagacgcgtctgc 648 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acaagtgagtagttgatggtgccaccaagaagatcacaaaggataattagacgcgtctgc 420 Query: 649 gcctgcctgctctttccctccttccgtttcgttgttctctcgatataatttaaatttcag 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gcctgcctgctctttccctccttccgtttcgttgttctctcgatataatttaaatttcag 480 Query: 709 ttccaaggaactaattaatttatacacacgctccttggtgtaactttgtttgatgtatgc 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ttccaaggaactaattaatttatacacacgctccttggtgtaactttgtttgatgtatgc 540 Query: 769 gaccgaggtatgaatatattttccaccaattat 801 ||||||||||||||||||||| |||||||||| Sbjct: 541 gaccgaggtatgaatatattt--caccaattat 571 Score = 42.1 bits (21), Expect = 3.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 165 caggaccgtgccgtcgaggcaaaagaccagaccggcagcttccttggcgagaa 217 ||||| || |||||||||| ||||||||||| | |||||| || |||||||| Sbjct: 90 caggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaa 142
>gb|AF255053.1|AF255053 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab17) mRNA, complete cds Length = 735 Score = 825 bits (416), Expect = 0.0 Identities = 613/678 (90%), Gaps = 8/678 (1%) Strand = Plus / Plus Query: 121 ccggcgaggccacgaagatggcgtccgagacggggcagtccatccaggaccgtgccgtcg 180 ||||||| ||||| |||| ||||||||||||||||||| |||| || ||||| ||||||| Sbjct: 63 ccggcgacgccaccaagacggcgtccgagacggggcagaccattcaagaccgcgccgtcg 122 Query: 181 aggcaaaagaccagaccggcagcttccttggcgagaaaagcgaggctgtcacgaagtctg 240 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| Sbjct: 123 aggcaaaagaccagaccggggccttccttggtgagaaaagcgaggctgtcacgaaggctg 182 Query: 241 cctccgagactaccgaggcggccaaaaagatgggcggcgaggccatggggaaggtgtccg 300 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct: 183 cctccgagactaccgaggcggctaaaaagatgggcggcgaggccatggggaaggcgtccg 242 Query: 301 agacggtgcaagccggtcaggatcgcgccgtcgagggcaaagaccagacggccagctttc 360 |||||||| |||||||| |||||| |||||||||||||||||||||| | | ||||||| Sbjct: 243 agacggtggaagccggtaaggatcacgccgtcgagggcaaagaccaggcaggcagctttt 302 Query: 361 tcggcgagaagacggaggccgtgaagaagacggccaccgagactgccgacgccgccaagg 420 |||||| ||||| || || || |||||||||||||||||||||||||| ||| |||||| Sbjct: 303 acggcgacaagactgacgctgtcaagaagacggccaccgagactgccgatgccaccaagg 362 Query: 421 agaagtccaccgaggccgcgcagcatgtccaggacaccgctgcagagtacaccaaggata 480 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 363 agaagtccaccgaggccgcccagcatgtccaggacaccgctgcacagtacaccaaggata 422 Query: 481 ccccggtcgcccccaaggaaaacgtcttccagaaggccggcgggaatattgtgggtgccg 540 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 423 ccccggtcgcccccaaggaaaacgtcttccagcaggccggcgggaatatggtgggtgccg 482 Query: 541 ctacggacgccaaggacgctgtcatgaacacgctcgggatgggaggagacaagtgagatg 600 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ctacagacgccaaggacgctgtcatgaacacgctcgggatgggaggagacaagtgagatg 542 Query: 601 ttgatggtgccaccaagaagatcacaaaggataattagacgcgtctgcgcctgcctgctc 660 | ||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||| | Sbjct: 543 cgggtggtgccaccaagaagaccacaaaggataa-taggcgcgtctgcgcttgcttgccc 601 Query: 661 tttccctccttccgtttcgttgttctctcgatataatttaaatttcagttccaaggaact 720 | ||||||||| |||||| | ||| || ||||||||||| || |||||||| || ||| Sbjct: 602 tagccctccttctgtttcgctattccttcaatataatttaatttccagttccatggcact 661 Query: 721 aattaatttatacacacgctccttggtgtaactttgtttgatgtatgcgaccgaggtatg 780 ||| |||||| |||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 662 aat-------tacacatgctccttggtgtaactttgtatgatgtatccgaccgaggtatg 714 Query: 781 aatatattttccaccaat 798 |||||||||||||||||| Sbjct: 715 aatatattttccaccaat 732 Score = 46.1 bits (23), Expect = 0.20 Identities = 53/63 (84%) Strand = Plus / Plus Query: 26 caaattattaggcaccaacacttcatcgacttagaaaatgtctagctggttacaagagaa 85 ||||||| || | ||||||||| |||| |||| ||||||||| | ||||| |||||||| Sbjct: 1 caaattagtacgtaccaacactccatcaacttcaaaaatgtctggttggtttcaagagaa 60 Query: 86 gtc 88 ||| Sbjct: 61 gtc 63
>gb|U73217.1|TAU73217 Triticum aestivum cold acclimation protein WCOR615 (Wcor615) mRNA, complete cds Length = 776 Score = 153 bits (77), Expect = 1e-33 Identities = 241/293 (82%), Gaps = 2/293 (0%) Strand = Plus / Plus Query: 148 agacggggcagtccatccaggaccgtgccgtcgaggcaaaagaccagaccggcagcttcc 207 ||||||||| |||| |||||||||| ||| ||||||| || ||||||||| ||||||| Sbjct: 93 agacggggccgtccgtccaggaccgcgccatcgaggcgaaggaccagaccatcagcttca 152 Query: 208 ttggcgagaaaagcgaggctgtcacgaagtctgcctccgagactaccgaggcggccaaaa 267 | ||||||||||||||||| ||||| ||| | || || || || |||| ||||||| | Sbjct: 153 tcggcgagaaaagcgaggccgtcaccaaggcggcgtcagacaccgccgacgcggccatga 212 Query: 268 agatgggcggcgaggccatggggaaggtgtccgagacggtgcaagccggtca-ggatcgc 326 ||||||| |||| ||||||||||||| ||| ||||||| ||| ||| ||| ||| ||| Sbjct: 213 agatggggagcgacgccatggggaaggcgtcagagacggggcaggcc-atcacggaccgc 271 Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 ||| ||||| |||| ||||||||| | |||| |||| |||||||| ||||||| ||| Sbjct: 272 gccatcgagagcaaggaccagacgttcggcttcttcggtgagaagaccgaggccgccaag 331 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgc 439 |||| |||| |||| || | ||||||||||||| |||||||| |||||||||| Sbjct: 332 aagatggccgccgacaccggcgacgccgccaagcagaagtccgccgaggccgc 384 Score = 91.7 bits (46), Expect = 4e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 507 ttccagaaggccggcgggaatattgtgggtgccgctacggacgccaaggacgctgtcatg 566 |||||| ||||||||||| | | ||||||||||||||| ||||| |||||| || ||| Sbjct: 458 ttccagcaggccggcgggcaggtgatgggtgccgctacgggcgccagggacgccgttatg 517 Query: 567 aacacgctcgggatgggaggagacaa 592 |||||||||||||||||||||||||| Sbjct: 518 aacacgctcgggatgggaggagacaa 543
>gb|AF255052.1|AF255052 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab19) mRNA, complete cds Length = 698 Score = 77.8 bits (39), Expect = 6e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| |||| |||| |||||||| | |||||| ||||||||||||||||||| Sbjct: 278 aggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagacggagg 337 Query: 379 ccgtgaagaagacggccaccgagactgccgacgccgccaaggagaag 425 | | ||| ||| |||| ||||||| ||||| || |||||| ||||| Sbjct: 338 cggccaagcagaaggccgccgagacggccgaggcggccaagcagaag 384 Score = 50.1 bits (25), Expect = 0.013 Identities = 28/29 (96%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||||||||||| |||||||| Sbjct: 301 gaccagaccggcagcttcctcggcgagaa 329
>gb|AF139915.1|AF139915 Triticum aestivum ABA-inducible protein WRAB1 mRNA, complete cds Length = 698 Score = 77.8 bits (39), Expect = 6e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| |||| |||| |||||||| | |||||| ||||||||||||||||||| Sbjct: 278 aggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagacggagg 337 Query: 379 ccgtgaagaagacggccaccgagactgccgacgccgccaaggagaag 425 | | ||| ||| |||| ||||||| ||||| || |||||| ||||| Sbjct: 338 cggccaagcagaaggccgccgagacggccgaggcggccaagcagaag 384 Score = 50.1 bits (25), Expect = 0.013 Identities = 28/29 (96%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||||||||||| |||||||| Sbjct: 301 gaccagaccggcagcttcctcggcgagaa 329
>gb|AY148491.1| Triticum aestivum LEA2 protein (LEA2) mRNA, complete cds Length = 664 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| |||| |||| |||||||| | |||||| ||||||||||||||||||| Sbjct: 200 aggaccgcgccgccgagagcaaggaccagacaggcagcttcctcggcgagaagacggagg 259 Query: 379 c 379 | Sbjct: 260 c 260 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||| ||||||||||| |||||||| Sbjct: 223 gaccagacaggcagcttcctcggcgagaa 251
>dbj|AB115914.1| Triticum aestivum Wrab18 mRNA for ABA inducible protein, complete cds Length = 852 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| |||| |||| |||||||| | |||||| ||||||||||||||||||| Sbjct: 279 aggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagacggagg 338 Query: 379 c 379 | Sbjct: 339 c 339 Score = 50.1 bits (25), Expect = 0.013 Identities = 28/29 (96%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||||||||||| |||||||| Sbjct: 302 gaccagaccggcagcttcctcggcgagaa 330
>gb|DQ244556.1| Zea mays clone 9124 mRNA sequence Length = 786 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| |||| |||| |||||||| | |||||| |||||||||||||| |||| Sbjct: 314 aggaccgcgccgccgagagcaaggaccagaccggcagcttcctcggcgagaagactgagg 373 Query: 379 c 379 | Sbjct: 374 c 374 Score = 50.1 bits (25), Expect = 0.013 Identities = 28/29 (96%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||||||||||| |||||||| Sbjct: 337 gaccagaccggcagcttcctcggcgagaa 365
>gb|AY148490.1| Triticum aestivum LEA1 protein (LEA1) mRNA, complete cds Length = 843 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| | ||||||| |||||||| |||||| ||||||||||||||||||| Sbjct: 334 aggagcgcgccgcccagggcaaggaccagaccgccagcaccctcggcgagaagacggagg 393 Query: 379 c 379 | Sbjct: 394 c 394
>emb|X56882.1|TA3LEA Wheat mRNA for a group 3 late embryogenesis abundant protein (LEA) Length = 934 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| | ||||||| |||||||| |||||| ||||||||||||||||||| Sbjct: 335 aggagcgcgccgcccagggcaaggaccagaccgccagcaccctcggcgagaagacggagg 394 Query: 379 c 379 | Sbjct: 395 c 395
>dbj|AB181486.1| Bromus inermis BiLEA2 mRNA for LEA protein, complete cds Length = 866 Score = 54.0 bits (27), Expect = 8e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 337 gcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaagaagacggcca 396 |||| |||||||| | |||| | |||||||||||||||||||| | |||| ||| |||| Sbjct: 358 gcaaggaccagaccggcagcgtcctcggcgagaagacggaggcggcgaagcagaaggccg 417 Query: 397 ccgagac 403 ||||||| Sbjct: 418 ccgagac 424 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 ||||||||||||||| |||| |||||||| Sbjct: 363 gaccagaccggcagcgtcctcggcgagaa 391
>gb|DQ246069.1| Zea mays clone 13925 mRNA sequence Length = 982 Score = 52.0 bits (26), Expect = 0.003 Identities = 53/62 (85%) Strand = Plus / Plus Query: 342 gaccagacggccagctttctcggcgagaagacggaggccgtgaagaagacggccaccgag 401 |||||||| |||||| |||||||||||||||||||| | |||| ||| |||| ||||| Sbjct: 425 gaccagaccgccagcaccctcggcgagaagacggaggcggcgaagcagaaggccgccgag 484 Query: 402 ac 403 || Sbjct: 485 ac 486
>emb|X13498.1|HVABAIP Barley pHVA1 mRNA for an ABA-inducible protein Length = 997 Score = 52.0 bits (26), Expect = 0.003 Identities = 95/118 (80%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| | ||||||| |||||||| | |||| ||||||||||||||||||| Sbjct: 397 aggagcgcgccgcccagggcaaggaccagaccggcagcgccctcggcgagaagacggagg 456 Query: 379 ccgtgaagaagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggc 436 | | ||| ||| |||| ||||||| | || || |||||| ||||| || ||||||| Sbjct: 457 cggccaagcagaaggccgccgagacgacggaggcggccaagcagaaggccgccgaggc 514
>emb|X78205.1|HVHVA1 H.vulgare (Himalaya) HVA1 gene Length = 1804 Score = 52.0 bits (26), Expect = 0.003 Identities = 95/118 (80%) Strand = Plus / Plus Query: 319 aggatcgcgccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggagg 378 |||| ||||||| | ||||||| |||||||| | |||| ||||||||||||||||||| Sbjct: 876 aggagcgcgccgcccagggcaaggaccagaccggcagcgccctcggcgagaagacggagg 935 Query: 379 ccgtgaagaagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggc 436 | | ||| ||| |||| ||||||| | || || |||||| ||||| || ||||||| Sbjct: 936 cggccaagcagaaggccgccgagacgacggaggcggccaagcagaaggccgccgaggc 993
>gb|AC026395.11| Homo sapiens chromosome 10 clone RP11-45D20, complete sequence Length = 172777 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 645 ctgcgcctgcctgctctttccct 667 ||||||||||||||||||||||| Sbjct: 98943 ctgcgcctgcctgctctttccct 98965
>gb|AC025947.9| Homo sapiens chromosome 10 clone RP11-78A18, complete sequence Length = 159082 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 645 ctgcgcctgcctgctctttccct 667 ||||||||||||||||||||||| Sbjct: 23829 ctgcgcctgcctgctctttccct 23851
>gb|AC148815.2| Medicago truncatula chromosome 2 BAC clone mth2-13k15, complete sequence Length = 126191 Score = 44.1 bits (22), Expect = 0.79 Identities = 25/26 (96%) Strand = Plus / Plus Query: 689 cgatataatttaaatttcagttccaa 714 |||||||||| ||||||||||||||| Sbjct: 66014 cgatataattgaaatttcagttccaa 66039
>emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chromosome X, complete sequence Length = 160779 Score = 44.1 bits (22), Expect = 0.79 Identities = 22/22 (100%) Strand = Plus / Minus Query: 690 gatataatttaaatttcagttc 711 |||||||||||||||||||||| Sbjct: 106274 gatataatttaaatttcagttc 106253
>gb|AC171735.2| Solanum lycopersicum chromosome 11 clone C11HBa0119D16, complete sequence Length = 117315 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aagaaaagaagaacacaaatt 31 ||||||||||||||||||||| Sbjct: 38438 aagaaaagaagaacacaaatt 38458
>ref|NM_001062730.1| Oryza sativa (japonica cultivar-group) Os05g0542500 (Os05g0542500) mRNA, complete cds Length = 968 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 375 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 434 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 435 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 491 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 390 gaccagaccggcggcttcctcggcgagaa 418
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gcatgtccaggacaccgctgc 463 ||||||||||||||||||||| Sbjct: 17475674 gcatgtccaggacaccgctgc 17475694
>gb|DQ789359.1| Oryza sativa (indica cultivar-group) late embryogenesis abundant protein (LEA3) mRNA, LEA3-1 allele, complete cds Length = 976 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 368 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 427 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 428 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 484 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 383 gaccagaccggcggcttcctcggcgagaa 411
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 gccgacgccgccaaggagaag 425 ||||||||||||||||||||| Sbjct: 2099497 gccgacgccgccaaggagaag 2099477
>ref|NM_001035680.1| Arabidopsis thaliana unknown protein (AT3G24180) mRNA, complete cds Length = 3621 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aagaaaagaagaacacaaatt 31 ||||||||||||||||||||| Sbjct: 3534 aagaaaagaagaacacaaatt 3514
>ref|NM_113323.3| Arabidopsis thaliana unknown protein (AT3G24180) mRNA, complete cds Length = 3626 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aagaaaagaagaacacaaatt 31 ||||||||||||||||||||| Sbjct: 3539 aagaaaagaagaacacaaatt 3519
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 102281 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 102340 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 102341 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 102397 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 102296 gaccagaccggcggcttcctcggcgagaa 102324
>gb|AC166340.4| Mus musculus chromosome 1, clone RP24-234I17, complete sequence Length = 172530 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aagaaaagaagaacacaaatt 31 ||||||||||||||||||||| Sbjct: 78368 aagaaaagaagaacacaaatt 78388
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 3223 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 3282 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 3283 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 3339 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 3238 gaccagaccggcggcttcctcggcgagaa 3266
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 26721284 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 26721343 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 26721344 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 26721400 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 26721299 gaccagaccggcggcttcctcggcgagaa 26721327
>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone BACR34C17, complete sequence Length = 167447 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gcatgtccaggacaccgctgc 463 ||||||||||||||||||||| Sbjct: 44299 gcatgtccaggacaccgctgc 44319
>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone BACR46G10, complete sequence Length = 165158 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gcatgtccaggacaccgctgc 463 ||||||||||||||||||||| Sbjct: 5728 gcatgtccaggacaccgctgc 5748
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ggaaggtgtccgagacggtgc 309 ||||||||||||||||||||| Sbjct: 2438270 ggaaggtgtccgagacggtgc 2438290
>dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUJ8 Length = 78921 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aagaaaagaagaacacaaatt 31 ||||||||||||||||||||| Sbjct: 31362 aagaaaagaagaacacaaatt 31382
>dbj|AK119713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F03, full insert sequence Length = 968 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 375 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 434 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 435 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 491 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 390 gaccagaccggcggcttcctcggcgagaa 418
>gb|AY148492.1| Triticum aestivum LEA3 protein (LEA3) mRNA, complete cds Length = 776 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||||||| ||| |||||||| Sbjct: 334 gaccagaccggcagctacctcggcgagaa 362
>dbj|AK063984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D08, full insert sequence Length = 1277 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 469 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 528 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 529 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 585 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 484 gaccagaccggcggcttcctcggcgagaa 512
>emb|AL840630.16| Zebrafish DNA sequence from clone CH211-279L11 in linkage group 17, complete sequence Length = 149164 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 ctgcctgctctttccctcctt 671 ||||||||||||||||||||| Sbjct: 23494 ctgcctgctctttccctcctt 23474
>emb|Z68090.1|OSLEA3X1 O.sativa mRNA for group 3 LEA (type I) protein Length = 966 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 356 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 415 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 416 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 472 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 371 gaccagaccggcggcttcctcggcgagaa 399
>gb|AF046884.1|AF046884 Oryza sativa group 3 LEA protein (lea) gene, complete cds Length = 3734 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 2713 gaccagaccggcggcttcctcggcgagaa 2741
>gb|U57641.1|OSU57641 Oryza sativa LEA-like protein mRNA, embryo-specific clone Ose730, complete cds Length = 953 Score = 42.1 bits (21), Expect = 3.1 Identities = 93/117 (79%) Strand = Plus / Plus Query: 327 gccgtcgagggcaaagaccagacggccagctttctcggcgagaagacggaggccgtgaag 386 |||| |||| |||| |||||||| | | |||| |||||||||||||| ||| | ||| Sbjct: 341 gccgccgagagcaaggaccagaccggcggcttcctcggcgagaagaccgagcaggccaag 400 Query: 387 aagacggccaccgagactgccgacgccgccaaggagaagtccaccgaggccgcgcag 443 ||| |||| ||||||| || | |||||||||| ||||| || ||||| | |||||| Sbjct: 401 cagaaggccgccgagaccgctggcgccgccaagcagaagaccgccgagacggcgcag 457 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 189 gaccagaccggcagcttccttggcgagaa 217 |||||||||||| ||||||| |||||||| Sbjct: 356 gaccagaccggcggcttcctcggcgagaa 384 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 137,577,359 Number of extensions: 7464881 Number of successful extensions: 143906 Number of sequences better than 10.0: 41 Number of HSP's gapped: 143898 Number of HSP's successfully gapped: 60 Length of query: 833 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 811 Effective length of database: 18,508,616,841 Effective search space: 15010488258051 Effective search space used: 15010488258051 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
