ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf125m19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9NZR2:LRP1B_HUMAN Low-density lipoprotein receptor-related prot... 35 0.52
2Q9JI18:LRP1B_MOUSE Low-density lipoprotein receptor-related prot... 30 9.8

>Q9NZR2:LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B precursor - Homo|
            sapiens (Human)
          Length = 4599
 Score = 34.7 bits (78), Expect = 0.52
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351  GTCLF-PWICSLSRDCRQRAHEFH-EGECEVSSGNCN-QTNQTWQWICEVDDD 500
            G C+   WIC   +DC     EFH +  C  +   C+ Q   +  WIC+ +DD
Sbjct: 2692 GRCILNTWICDGQKDCEDGRDEFHCDSSCSWNQFACSAQKCISKHWICDGEDD 2744



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>Q9JI18:LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B precursor - Mus|
            musculus (Mouse)
          Length = 4599

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351  GTCLF-PWICSLSRDCRQRAHEFH-EGECEVSSGNCN-QTNQTWQWICEVDDD 500
            G C+   W+C   +DC     E H +  C  +   C+ +   +  WIC+ +DD
Sbjct: 2692 GRCILNTWVCDGQKDCEDGLDELHCDSSCSWNQFACSVKKCISKHWICDGEDD 2744


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 158,580,339
Number of extensions: 3515678
Number of successful extensions: 7335
Number of sequences better than 10.0: 2
Number of HSP's gapped: 7326
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 181
Effective length of database: 69,965,399
Effective search space: 12663737219
Effective search space used: 12663737219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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