| Clone Name | FLbaf128e15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001067576.1| Oryza sativa (japonica cultivar-group) Os08g0159100 (Os08g0159100) mRNA, complete cds Length = 1340 Score = 567 bits (286), Expect = e-158 Identities = 504/576 (87%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 415 gcatggtttatttttgcatttataggcgttggtgttatactcttcattacctccatcttc 474 ||||||||||||| || ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 530 gcatggtttatttacgcgtttattggtgttggtgtaatactcttcattacatccatcttt 589 Query: 475 ggttgtgctggagcgtcaaccgggagtggatgctgcttatccacttattcattcctcatc 534 |||||||||||||| || | || | || |||||||||||| |||||| |||||||| Sbjct: 590 ggttgtgctggagcatcga---ggggcgggtgctgcttatccttttattcgttcctcatt 646 Query: 535 attttgttcatactagtagagcttgctgcaggatgcttcattttcttcgaccatggctgg 594 ||| |||||||||| |||||||||||||||||| | |||||||||||| ||||| ||||| Sbjct: 647 attctgttcatactggtagagcttgctgcaggaggtttcattttcttcaaccatagctgg 706 Query: 595 aaagatgtaattccagttgataaaactggtaactttgacacgatctacagtttcctgaaa 654 |||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||| Sbjct: 707 aaagatgtaattccagttgataaaactggtaactttgacatgatgtacagctttttgaag 766 Query: 655 gaaaattggagaactgcaaaatgggtcgcacttggagctgttgtgtttgaggcactgctg 714 || |||||||||| ||||| ||||| |||||||||||||| | ||||||||| ||||| Sbjct: 767 gagaattggagaatcgcaaagtgggttgcacttggagctgtactatttgaggcagtgctg 826 Query: 715 ttcactgtagccctcatagtgcagtcaggcaatcaagatgattatgacagtgatgatgag 774 ||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 827 ttcactgtagctctcatagtgcagtcaggcaatcaagcagactatgacagtgatgacgag 886 Query: 775 tacattggcccgaggtccggagtccgtcagccgttggtgaataagcaaactgttaccgac 834 ||||||| ||| ||||| | ||| |||||||||||||| |||||| ||||| | ||| Sbjct: 887 tacattgccccaaggtcttcaacccggcagccgttggtgaacaagcaacctgttgctgac 946 Query: 835 cccagggtgcccaatcttgactaccgtccaatcaggaacgatgcatggagccaaagaatg 894 || ||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 947 cctagggtgcccaaccttgactaccgtccaatccgaaacgatgcgtggagccaaagaatg 1006 Query: 895 agggacaagtatggggtggattcctttgatccaaacaggtttcaacaggccacgatatct 954 || || |||||||||||||| ||||||||||||||||||| |||||||| || |||||| Sbjct: 1007 agagaaaagtatggggtggacacctttgatccaaacaggttccaacaggcgacaatatct 1066 Query: 955 cccgcagaacaaagaaacagatgcacaatcctctga 990 |||||||||||||||||| ||||| ||||||||||| Sbjct: 1067 cccgcagaacaaagaaaccgatgcgcaatcctctga 1102 Score = 111 bits (56), Expect = 7e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctcatggct 240 |||||||||||||| |||||||| || ||||| |||||||||||| | || | |||| Sbjct: 266 atggcgtgcagggggttcttcgagtgggtcctgaagctgctcaacttggtggtgatggtg 325 Query: 241 gtcgggctggccatggcgggctacggcgcctacctgctcgtgttctggctccagctgctg 300 ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| Sbjct: 326 gtcgggctggccatgatggggtacggcgcctacctcctcgtggcgtggctccagctgctg 385 Query: 301 cctccgtcgccgccggcgccgcct 324 ||| || |||||||| ||||||| Sbjct: 386 ccttcgccgccgccgctgccgcct 409
>dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full insert sequence Length = 1340 Score = 567 bits (286), Expect = e-158 Identities = 504/576 (87%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 415 gcatggtttatttttgcatttataggcgttggtgttatactcttcattacctccatcttc 474 ||||||||||||| || ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 530 gcatggtttatttacgcgtttattggtgttggtgtaatactcttcattacatccatcttt 589 Query: 475 ggttgtgctggagcgtcaaccgggagtggatgctgcttatccacttattcattcctcatc 534 |||||||||||||| || | || | || |||||||||||| |||||| |||||||| Sbjct: 590 ggttgtgctggagcatcga---ggggcgggtgctgcttatccttttattcgttcctcatt 646 Query: 535 attttgttcatactagtagagcttgctgcaggatgcttcattttcttcgaccatggctgg 594 ||| |||||||||| |||||||||||||||||| | |||||||||||| ||||| ||||| Sbjct: 647 attctgttcatactggtagagcttgctgcaggaggtttcattttcttcaaccatagctgg 706 Query: 595 aaagatgtaattccagttgataaaactggtaactttgacacgatctacagtttcctgaaa 654 |||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||| Sbjct: 707 aaagatgtaattccagttgataaaactggtaactttgacatgatgtacagctttttgaag 766 Query: 655 gaaaattggagaactgcaaaatgggtcgcacttggagctgttgtgtttgaggcactgctg 714 || |||||||||| ||||| ||||| |||||||||||||| | ||||||||| ||||| Sbjct: 767 gagaattggagaatcgcaaagtgggttgcacttggagctgtactatttgaggcagtgctg 826 Query: 715 ttcactgtagccctcatagtgcagtcaggcaatcaagatgattatgacagtgatgatgag 774 ||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 827 ttcactgtagctctcatagtgcagtcaggcaatcaagcagactatgacagtgatgacgag 886 Query: 775 tacattggcccgaggtccggagtccgtcagccgttggtgaataagcaaactgttaccgac 834 ||||||| ||| ||||| | ||| |||||||||||||| |||||| ||||| | ||| Sbjct: 887 tacattgccccaaggtcttcaacccggcagccgttggtgaacaagcaacctgttgctgac 946 Query: 835 cccagggtgcccaatcttgactaccgtccaatcaggaacgatgcatggagccaaagaatg 894 || ||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 947 cctagggtgcccaaccttgactaccgtccaatccgaaacgatgcgtggagccaaagaatg 1006 Query: 895 agggacaagtatggggtggattcctttgatccaaacaggtttcaacaggccacgatatct 954 || || |||||||||||||| ||||||||||||||||||| |||||||| || |||||| Sbjct: 1007 agagaaaagtatggggtggacacctttgatccaaacaggttccaacaggcgacaatatct 1066 Query: 955 cccgcagaacaaagaaacagatgcacaatcctctga 990 |||||||||||||||||| ||||| ||||||||||| Sbjct: 1067 cccgcagaacaaagaaaccgatgcgcaatcctctga 1102 Score = 111 bits (56), Expect = 7e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctcatggct 240 |||||||||||||| |||||||| || ||||| |||||||||||| | || | |||| Sbjct: 266 atggcgtgcagggggttcttcgagtgggtcctgaagctgctcaacttggtggtgatggtg 325 Query: 241 gtcgggctggccatggcgggctacggcgcctacctgctcgtgttctggctccagctgctg 300 ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| Sbjct: 326 gtcgggctggccatgatggggtacggcgcctacctcctcgtggcgtggctccagctgctg 385 Query: 301 cctccgtcgccgccggcgccgcct 324 ||| || |||||||| ||||||| Sbjct: 386 ccttcgccgccgccgctgccgcct 409
>dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K06, full insert sequence Length = 1242 Score = 567 bits (286), Expect = e-158 Identities = 504/576 (87%), Gaps = 3/576 (0%) Strand = Plus / Plus Query: 415 gcatggtttatttttgcatttataggcgttggtgttatactcttcattacctccatcttc 474 ||||||||||||| || ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 529 gcatggtttatttacgcgtttattggtgttggtgtaatactcttcattacatccatcttt 588 Query: 475 ggttgtgctggagcgtcaaccgggagtggatgctgcttatccacttattcattcctcatc 534 |||||||||||||| || | || | || |||||||||||| |||||| |||||||| Sbjct: 589 ggttgtgctggagcatcga---ggggcgggtgctgcttatccttttattcgttcctcatt 645 Query: 535 attttgttcatactagtagagcttgctgcaggatgcttcattttcttcgaccatggctgg 594 ||| |||||||||| |||||||||||||||||| | |||||||||||| ||||| ||||| Sbjct: 646 attctgttcatactggtagagcttgctgcaggaggtttcattttcttcaaccatagctgg 705 Query: 595 aaagatgtaattccagttgataaaactggtaactttgacacgatctacagtttcctgaaa 654 |||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||| Sbjct: 706 aaagatgtaattccagttgataaaactggtaactttgacatgatgtacagctttttgaag 765 Query: 655 gaaaattggagaactgcaaaatgggtcgcacttggagctgttgtgtttgaggcactgctg 714 || |||||||||| ||||| ||||| |||||||||||||| | ||||||||| ||||| Sbjct: 766 gagaattggagaatcgcaaagtgggttgcacttggagctgtactatttgaggcagtgctg 825 Query: 715 ttcactgtagccctcatagtgcagtcaggcaatcaagatgattatgacagtgatgatgag 774 ||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 826 ttcactgtagctctcatagtgcagtcaggcaatcaagcagactatgacagtgatgacgag 885 Query: 775 tacattggcccgaggtccggagtccgtcagccgttggtgaataagcaaactgttaccgac 834 ||||||| ||| ||||| | ||| |||||||||||||| |||||| ||||| | ||| Sbjct: 886 tacattgccccaaggtcttcaacccggcagccgttggtgaacaagcaacctgttgctgac 945 Query: 835 cccagggtgcccaatcttgactaccgtccaatcaggaacgatgcatggagccaaagaatg 894 || ||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 946 cctagggtgcccaaccttgactaccgtccaatccgaaacgatgcgtggagccaaagaatg 1005 Query: 895 agggacaagtatggggtggattcctttgatccaaacaggtttcaacaggccacgatatct 954 || || |||||||||||||| ||||||||||||||||||| |||||||| || |||||| Sbjct: 1006 agagaaaagtatggggtggacacctttgatccaaacaggttccaacaggcgacaatatct 1065 Query: 955 cccgcagaacaaagaaacagatgcacaatcctctga 990 |||||||||||||||||| ||||| ||||||||||| Sbjct: 1066 cccgcagaacaaagaaaccgatgcgcaatcctctga 1101 Score = 111 bits (56), Expect = 7e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctcatggct 240 |||||||||||||| |||||||| || ||||| |||||||||||| | || | |||| Sbjct: 265 atggcgtgcagggggttcttcgagtgggtcctgaagctgctcaacttggtggtgatggtg 324 Query: 241 gtcgggctggccatggcgggctacggcgcctacctgctcgtgttctggctccagctgctg 300 ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| Sbjct: 325 gtcgggctggccatgatggggtacggcgcctacctcctcgtggcgtggctccagctgctg 384 Query: 301 cctccgtcgccgccggcgccgcct 324 ||| || |||||||| ||||||| Sbjct: 385 ccttcgccgccgccgctgccgcct 408
>emb|CT834489.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103K06, full insert sequence Length = 1577 Score = 466 bits (235), Expect = e-127 Identities = 409/467 (87%) Strand = Plus / Plus Query: 520 tattcattcctcatcattttgttcatactagtagagcttgctgcaggatgcttcattttc 579 ||||| |||||||| ||| |||||||||| ||| |||||||||||||| | ||||||||| Sbjct: 965 tattcgttcctcattattctgttcatactggtaaagcttgctgcaggaggtttcattttc 1024 Query: 580 ttcgaccatggctggaaagatgtaattccagttgataaaactggtaactttgacacgatc 639 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1025 ttcaaccatagctggaaagatgtaattccagttgataaaactggtaactttgacatcatg 1084 Query: 640 tacagtttcctgaaagaaaattggagaactgcaaaatgggtcgcacttggagctgttgtg 699 ||||| || |||| | |||||||||| ||||| ||||| |||||||||||||| | Sbjct: 1085 tacagctttttgaagcagaattggagaatcgcaaagtgggttgcacttggagctgtacta 1144 Query: 700 tttgaggcactgctgttcactgtagccctcatagtgcagtcaggcaatcaagatgattat 759 ||||||||| || ||||||||||||| ||||||||||||||||||||||||| || ||| Sbjct: 1145 tttgaggcagtgatgttcactgtagctctcatagtgcagtcaggcaatcaagcagactat 1204 Query: 760 gacagtgatgatgagtacattggcccgaggtccggagtccgtcagccgttggtgaataag 819 ||||||||||| |||||||||| ||| ||||| | ||| |||||||||||||| ||| Sbjct: 1205 gacagtgatgacgagtacattgccccaaggtcttcaacccggcagccgttggtgaacaag 1264 Query: 820 caaactgttaccgaccccagggtgcccaatcttgactaccgtccaatcaggaacgatgca 879 ||| ||||| | ||||| ||||||||||| |||||||||||||||||| | |||||||| Sbjct: 1265 caacctgttgctgaccctagggtgcccaaccttgactaccgtccaatccgaaacgatgcg 1324 Query: 880 tggagccaaagaatgagggacaagtatggggtggattcctttgatccaaacaggtttcaa 939 ||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||| Sbjct: 1325 tggagccaaagaatgagagaaaagtatggggtggacacctttgatccaaacaggttccaa 1384 Query: 940 caggccacgatatctcccgcagaacaaagaaacagatgcacaatcct 986 ||||| || |||||||||||||||||||||||| ||||| ||||||| Sbjct: 1385 caggcgacaatatctcccgcagaacaaagaaaccgatgcgcaatcct 1431 Score = 111 bits (56), Expect = 7e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctcatggct 240 |||||||||||||| |||||||| || ||||| |||||||||||| | || | |||| Sbjct: 236 atggcgtgcagggggttcttcgagtgggtcctgaagctgctcaacttggtggtgatggtg 295 Query: 241 gtcgggctggccatggcgggctacggcgcctacctgctcgtgttctggctccagctgctg 300 ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| Sbjct: 296 gtcgggctggccatgatggggtacggcgcctacctcctcgtggcgtggctccagctgctg 355 Query: 301 cctccgtcgccgccggcgccgcct 324 ||| || |||||||| ||||||| Sbjct: 356 ccttcgccgccgccgctgccgcct 379 Score = 75.8 bits (38), Expect = 4e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 415 gcatggtttatttttgcatttataggcgttggtgttatactcttcattacctccatcttc 474 ||||||||||||| || ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 491 gcatggtttatttacgcgtttattggtgttggtgtaatactcttcattacatccatcttt 550 Query: 475 ggttgtgctggagc 488 ||||| |||||||| Sbjct: 551 ggttgcgctggagc 564
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 200 bits (101), Expect = 1e-47 Identities = 170/193 (88%) Strand = Plus / Plus Query: 704 aggcactgctgttcactgtagccctcatagtgcagtcaggcaatcaagatgattatgaca 763 ||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||| Sbjct: 3439981 aggcagtgctgttcactgtagctctcatagtgcagtcaggcaatcaagcagactatgaca 3440040 Query: 764 gtgatgatgagtacattggcccgaggtccggagtccgtcagccgttggtgaataagcaaa 823 ||||||| |||||||||| ||| ||||| | ||| |||||||||||||| |||||| Sbjct: 3440041 gtgatgacgagtacattgccccaaggtcttcaacccggcagccgttggtgaacaagcaac 3440100 Query: 824 ctgttaccgaccccagggtgcccaatcttgactaccgtccaatcaggaacgatgcatgga 883 ||||| | ||||| ||||||||||| |||||||||||||||||| | |||||||| |||| Sbjct: 3440101 ctgttgctgaccctagggtgcccaaccttgactaccgtccaatccgaaacgatgcgtgga 3440160 Query: 884 gccaaagaatgag 896 ||||||||||||| Sbjct: 3440161 gccaaagaatgag 3440173 Score = 121 bits (61), Expect = 8e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 902 agtatggggtggattcctttgatccaaacaggtttcaacaggccacgatatctcccgcag 961 ||||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| Sbjct: 3440267 agtatggggtggacacctttgatccaaacaggttccaacaggcgacaatatctcccgcag 3440326 Query: 962 aacaaagaaacagatgcacaatcctctga 990 ||||||||||| ||||| ||||||||||| Sbjct: 3440327 aacaaagaaaccgatgcgcaatcctctga 3440355 Score = 111 bits (56), Expect = 7e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctcatggct 240 |||||||||||||| |||||||| || ||||| |||||||||||| | || | |||| Sbjct: 3437383 atggcgtgcagggggttcttcgagtgggtcctgaagctgctcaacttggtggtgatggtg 3437442 Query: 241 gtcgggctggccatggcgggctacggcgcctacctgctcgtgttctggctccagctgctg 300 ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| Sbjct: 3437443 gtcgggctggccatgatggggtacggcgcctacctcctcgtggcgtggctccagctgctg 3437502 Query: 301 cctccgtcgccgccggcgccgcct 324 ||| || |||||||| ||||||| Sbjct: 3437503 ccttcgccgccgccgctgccgcct 3437526 Score = 101 bits (51), Expect = 7e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 520 tattcattcctcatcattttgttcatactagtagagcttgctgcaggatgcttcattttc 579 ||||| |||||||| ||| |||||||||| |||||||||||||||||| | ||||||||| Sbjct: 3438748 tattcgttcctcattattctgttcatactggtagagcttgctgcaggaggtttcattttc 3438807 Query: 580 ttcgaccatggctggaaagatgt 602 ||| ||||| ||||||||||||| Sbjct: 3438808 ttcaaccatagctggaaagatgt 3438830 Score = 101 bits (51), Expect = 7e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 601 gtaattccagttgataaaactggtaactttgacacgatctacagtttcctgaaagaaaat 660 |||||||||||||||||||||||||||||||||| ||| ||||| || |||| || ||| Sbjct: 3438914 gtaattccagttgataaaactggtaactttgacatgatgtacagctttttgaaggagaat 3438973 Query: 661 tggagaactgcaaaatgggtcgcacttggagctgt 695 ||||||| ||||| ||||| |||||||||||||| Sbjct: 3438974 tggagaatcgcaaagtgggttgcacttggagctgt 3439008 Score = 75.8 bits (38), Expect = 4e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 419 ggtttatttttgcatttataggcgttggtgttatactcttcattacctccatcttcggtt 478 ||||||||| || ||||| || |||||||| |||||||||||||| |||||||| |||| Sbjct: 3438278 ggtttatttacgcgtttattggtgttggtgtaatactcttcattacatccatctttggtt 3438337 Query: 479 gtgctggagc 488 |||||||||| Sbjct: 3438338 gtgctggagc 3438347 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 11055790 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 11055736
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 200 bits (101), Expect = 1e-47 Identities = 170/193 (88%) Strand = Plus / Plus Query: 704 aggcactgctgttcactgtagccctcatagtgcagtcaggcaatcaagatgattatgaca 763 ||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||| Sbjct: 73400 aggcagtgctgttcactgtagctctcatagtgcagtcaggcaatcaagcagactatgaca 73459 Query: 764 gtgatgatgagtacattggcccgaggtccggagtccgtcagccgttggtgaataagcaaa 823 ||||||| |||||||||| ||| ||||| | ||| |||||||||||||| |||||| Sbjct: 73460 gtgatgacgagtacattgccccaaggtcttcaacccggcagccgttggtgaacaagcaac 73519 Query: 824 ctgttaccgaccccagggtgcccaatcttgactaccgtccaatcaggaacgatgcatgga 883 ||||| | ||||| ||||||||||| |||||||||||||||||| | |||||||| |||| Sbjct: 73520 ctgttgctgaccctagggtgcccaaccttgactaccgtccaatccgaaacgatgcgtgga 73579 Query: 884 gccaaagaatgag 896 ||||||||||||| Sbjct: 73580 gccaaagaatgag 73592 Score = 121 bits (61), Expect = 8e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 902 agtatggggtggattcctttgatccaaacaggtttcaacaggccacgatatctcccgcag 961 ||||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||| Sbjct: 73686 agtatggggtggacacctttgatccaaacaggttccaacaggcgacaatatctcccgcag 73745 Query: 962 aacaaagaaacagatgcacaatcctctga 990 ||||||||||| ||||| ||||||||||| Sbjct: 73746 aacaaagaaaccgatgcgcaatcctctga 73774 Score = 111 bits (56), Expect = 7e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctcatggct 240 |||||||||||||| |||||||| || ||||| |||||||||||| | || | |||| Sbjct: 70802 atggcgtgcagggggttcttcgagtgggtcctgaagctgctcaacttggtggtgatggtg 70861 Query: 241 gtcgggctggccatggcgggctacggcgcctacctgctcgtgttctggctccagctgctg 300 ||||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| Sbjct: 70862 gtcgggctggccatgatggggtacggcgcctacctcctcgtggcgtggctccagctgctg 70921 Query: 301 cctccgtcgccgccggcgccgcct 324 ||| || |||||||| ||||||| Sbjct: 70922 ccttcgccgccgccgctgccgcct 70945 Score = 101 bits (51), Expect = 7e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 520 tattcattcctcatcattttgttcatactagtagagcttgctgcaggatgcttcattttc 579 ||||| |||||||| ||| |||||||||| |||||||||||||||||| | ||||||||| Sbjct: 72167 tattcgttcctcattattctgttcatactggtagagcttgctgcaggaggtttcattttc 72226 Query: 580 ttcgaccatggctggaaagatgt 602 ||| ||||| ||||||||||||| Sbjct: 72227 ttcaaccatagctggaaagatgt 72249 Score = 101 bits (51), Expect = 7e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 601 gtaattccagttgataaaactggtaactttgacacgatctacagtttcctgaaagaaaat 660 |||||||||||||||||||||||||||||||||| ||| ||||| || |||| || ||| Sbjct: 72333 gtaattccagttgataaaactggtaactttgacatgatgtacagctttttgaaggagaat 72392 Query: 661 tggagaactgcaaaatgggtcgcacttggagctgt 695 ||||||| ||||| ||||| |||||||||||||| Sbjct: 72393 tggagaatcgcaaagtgggttgcacttggagctgt 72427 Score = 75.8 bits (38), Expect = 4e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 419 ggtttatttttgcatttataggcgttggtgttatactcttcattacctccatcttcggtt 478 ||||||||| || ||||| || |||||||| |||||||||||||| |||||||| |||| Sbjct: 71697 ggtttatttacgcgtttattggtgttggtgtaatactcttcattacatccatctttggtt 71756 Query: 479 gtgctggagc 488 |||||||||| Sbjct: 71757 gtgctggagc 71766
>gb|AY105494.1| Zea mays PCO138455 mRNA sequence Length = 1377 Score = 65.9 bits (33), Expect = 4e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 571 ttcattttcttcgaccatggctggaaagatgtaattccagt 611 ||||||||||| |||||| |||||||||||||||||||||| Sbjct: 562 ttcattttctttgaccatagctggaaagatgtaattccagt 602 Score = 50.1 bits (25), Expect = 0.023 Identities = 46/53 (86%) Strand = Plus / Plus Query: 183 ggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||| ||||||||||||| ||| | |||| |||||||||| || |||||| Sbjct: 183 ggcgtgccggggcttcttcgagtgcctgctcaggctgctcaacttcatcctca 235
>emb|CT831054.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA202E20, full insert sequence Length = 1466 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 159 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 213
>emb|CT831053.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124F02, full insert sequence Length = 1347 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 163 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 217
>emb|CT831051.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110P05, full insert sequence Length = 1799 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 162 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 216
>ref|NM_001067979.1| Oryza sativa (japonica cultivar-group) Os08g0282000 (Os08g0282000) mRNA, complete cds Length = 1384 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 192 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 246
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1446H11 Length = 135488 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 26396 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 26342
>dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037J09, full insert sequence Length = 1385 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 193 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 247
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0560B10, complete sequence Length = 108295 Score = 61.9 bits (31), Expect = 6e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 181 atggcgtgcaggggcttcttcgaatgcgtcctcaagctgctcaacctcgtcctca 235 ||||||||| ||||||||||||||||| | || |||||||||||| | ||||||| Sbjct: 14306 atggcgtgccggggcttcttcgaatgcctactgaagctgctcaactttgtcctca 14252
>gb|BT013092.1| Lycopersicon esculentum clone 114358R, mRNA sequence Length = 1272 Score = 48.1 bits (24), Expect = 0.093 Identities = 45/52 (86%) Strand = Plus / Plus Query: 590 gctggaaagatgtaattccagttgataaaactggtaactttgacacgatcta 641 |||||||||||| ||||||| |||||||| || |||||||| |||||||| Sbjct: 623 gctggaaagatgaaattccaagggataaaacgggcaactttgaaacgatcta 674
>ref|XM_863499.1| PREDICTED: Canis familiaris similar to methyl-CpG binding domain protein 3, transcript variant 4 (LOC485080), mRNA Length = 1561 Score = 46.1 bits (23), Expect = 0.37 Identities = 26/27 (96%) Strand = Plus / Minus Query: 297 gctgcctccgtcgccgccggcgccgcc 323 ||||||||||||||||||| ||||||| Sbjct: 173 gctgcctccgtcgccgccgccgccgcc 147
>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map 8p21-p11, complete sequence Length = 301232 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Plus Query: 749 aagatgattatgacagtgatgat 771 ||||||||||||||||||||||| Sbjct: 2130 aagatgattatgacagtgatgat 2152
>gb|AC015779.8| Homo sapiens chromosome , clone RP11-2I13, complete sequence Length = 90727 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Minus Query: 749 aagatgattatgacagtgatgat 771 ||||||||||||||||||||||| Sbjct: 4206 aagatgattatgacagtgatgat 4184
>emb|CT830930.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023J12, full insert sequence Length = 685 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 94 cgtcgccgccggcgccgcctcc 115
>dbj|AK239546.1| Sus scrofa mRNA, clone:THY010112B01, expressed in thymus Length = 2264 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Plus Query: 294 gctgctgcctccgtcgccgccggcgccgcc 323 ||||||||| ||| |||||||||||||||| Sbjct: 139 gctgctgccgccgccgccgccggcgccgcc 168
>ref|NM_001057033.1| Oryza sativa (japonica cultivar-group) Os03g0565100 (Os03g0565100) mRNA, complete cds Length = 1397 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 82 cgtcgccgccggcgccgcctcc 103
>ref|NM_001048678.1| Oryza sativa (japonica cultivar-group) Os01g0170700 (Os01g0170700) mRNA, partial cds Length = 2320 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 tcgccgccggcgccgcctccaa 328 |||||||||||||||||||||| Sbjct: 130 tcgccgccggcgccgcctccaa 109
>ref|XM_001115307.1| PREDICTED: Macaca mulatta similar to immunoglobulin superfamily, member 8 (LOC720186), mRNA Length = 2421 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 gctgctgcctccgtcgccgccg 315 |||||||||||||||||||||| Sbjct: 252 gctgctgcctccgtcgccgccg 273
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 95504 cgtcgccgccggcgccgcctcc 95483
>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete sequence Length = 157662 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 302 ctccgtcgccgccggcgccgcc 323 |||||||||||||||||||||| Sbjct: 96804 ctccgtcgccgccggcgccgcc 96825
>ref|XM_537618.2| PREDICTED: Canis familiaris similar to Y39A1A.9 (LOC480499), mRNA Length = 2999 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Minus Query: 294 gctgctgcctccgtcgccgccggcgccgcc 323 ||||||||||||| |||||||| ||||||| Sbjct: 78 gctgctgcctccgccgccgccgccgccgcc 49
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 27138348 cgtcgccgccggcgccgcctcc 27138369
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 302 ctccgtcgccgccggcgccgcc 323 |||||||||||||||||||||| Sbjct: 17059627 ctccgtcgccgccggcgccgcc 17059648 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 20170447 cgtcgccgccggcgccgcctcc 20170426 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 gctgcctccgtcgccgccggcgccg 321 |||||||||| |||||||||||||| Sbjct: 26522312 gctgcctccgccgccgccggcgccg 26522288 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 tcattcctcatcattttgttc 543 ||||||||||||||||||||| Sbjct: 29989083 tcattcctcatcattttgttc 29989103
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 tcgccgccggcgccgcctccaa 328 |||||||||||||||||||||| Sbjct: 3651402 tcgccgccggcgccgcctccaa 3651381
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 tcgccgccggcgccgcctccaa 328 |||||||||||||||||||||| Sbjct: 59882 tcgccgccggcgccgcctccaa 59861
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 80991 cgtcgccgccggcgccgcctcc 81012
>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full insert sequence Length = 1273 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 63 cgtcgccgccggcgccgcctcc 84
>dbj|AK110918.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C10, full insert sequence Length = 1473 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 302 ctccgtcgccgccggcgccgcctcca 327 ||||| |||||||||||||||||||| Sbjct: 1057 ctccggcgccgccggcgccgcctcca 1082
>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full insert sequence Length = 1398 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 83 cgtcgccgccggcgccgcctcc 104
>dbj|AK101269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032N01, full insert sequence Length = 2321 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 tcgccgccggcgccgcctccaa 328 |||||||||||||||||||||| Sbjct: 131 tcgccgccggcgccgcctccaa 110
>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full insert sequence Length = 1328 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 305 cgtcgccgccggcgccgcctcc 326 |||||||||||||||||||||| Sbjct: 78 cgtcgccgccggcgccgcctcc 99
>emb|AL591209.17| Mouse DNA sequence from clone RP23-309H19 on chromosome 11, complete sequence Length = 199634 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Plus Query: 297 gctgcctccgtcgccgccggcgccgcctcc 326 |||||| |||||||||||| |||||||||| Sbjct: 103337 gctgccgccgtcgccgccgccgccgcctcc 103366
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 299 tgcctccgtcgccgccggcgccgcc 323 |||| |||||||||||||||||||| Sbjct: 4133006 tgccgccgtcgccgccggcgccgcc 4133030
>ref|XM_001175714.1| PREDICTED: Strongylocentrotus purpuratus similar to sea urchin Arp3 (SUArp3) (LOC576708), mRNA Length = 2209 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 aagatgattatgacagtgatgatga 773 |||||||| |||||||||||||||| Sbjct: 1754 aagatgatgatgacagtgatgatga 1778
>ref|XM_775172.2| PREDICTED: Strongylocentrotus purpuratus similar to sea urchin Arp3 (SUArp3), transcript variant 1 (LOC576708), mRNA Length = 2209 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 749 aagatgattatgacagtgatgatga 773 |||||||| |||||||||||||||| Sbjct: 1754 aagatgatgatgacagtgatgatga 1778
>ref|XM_001154389.1| PREDICTED: Pan troglodytes microfibrillar-associated protein 3-like, transcript variant 1 (MFAP3L), mRNA Length = 6254 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 gctgtcgggctggccatggcg 258 ||||||||||||||||||||| Sbjct: 46 gctgtcgggctggccatggcg 66
>ref|XM_001130535.1| PREDICTED: Homo sapiens hypothetical protein LOC731715 (LOC731715), mRNA Length = 672 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 301 cctccgtcgccgccggcgccgcctccaag 329 |||||| |||||||| ||||||||||||| Sbjct: 65 cctccgccgccgccgccgccgcctccaag 93
>ref|XM_001130600.1| PREDICTED: Homo sapiens hypothetical protein LOC729552 (LOC729552), mRNA Length = 672 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 301 cctccgtcgccgccggcgccgcctccaag 329 |||||| |||||||| ||||||||||||| Sbjct: 65 cctccgccgccgccgccgccgcctccaag 93
>ref|XM_001112234.1| PREDICTED: Macaca mulatta similar to heterogeneous nuclear ribonucleoprotein A0 (LOC713181), mRNA Length = 3074 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 ccagctgctgcctccgtcgccgccg 315 |||||||||||||||| |||||||| Sbjct: 1165 ccagctgctgcctccgccgccgccg 1141
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 gctgcctccgtcgccgccggcgccg 321 |||||||||| |||||||||||||| Sbjct: 79043 gctgcctccgccgccgccggcgccg 79019
>ref|XM_868470.1| PREDICTED: Bos taurus similar to potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (LOC616444), mRNA Length = 807 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 47 ctgctgcctccgccgccgccgccgccgcc 19
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 tgcctccgtcgccgccggcgccgcc 323 |||| |||||||||||||||||||| Sbjct: 362038 tgccgccgtcgccgccggcgccgcc 362014 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tgcctccgtcgccgccggcgc 319 ||||||||||||||||||||| Sbjct: 1586793 tgcctccgtcgccgccggcgc 1586773 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 ccgtcgccgccggcgccgcct 324 ||||||||||||||||||||| Sbjct: 3922230 ccgtcgccgccggcgccgcct 3922210
>ref|XM_593096.2| PREDICTED: Bos taurus similar to heterogeneous nuclear ribonucleoprotein A0 (LOC540311), mRNA Length = 2918 Score = 42.1 bits (21), Expect = 5.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 291 ccagctgctgcctccgtcgccgccggcgccgcc 323 ||||||||||||||| |||||||| ||||||| Sbjct: 1275 ccagctgctgcctcctccgccgccgccgccgcc 1243
>ref|XM_849324.1| PREDICTED: Canis familiaris similar to peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor (LOC485396), mRNA Length = 1785 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 gctgcctccgtcgccgccggc 317 ||||||||||||||||||||| Sbjct: 430 gctgcctccgtcgccgccggc 410
>ref|XM_857710.1| PREDICTED: Canis familiaris similar to heterogeneous nuclear ribonucleoprotein A0, transcript variant 3 (LOC481524), mRNA Length = 1933 Score = 42.1 bits (21), Expect = 5.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 291 ccagctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| ||| |||||||| ||||||| Sbjct: 1132 ccagctgctgccaccgccgccgccgccgccgcc 1100
>ref|XM_538645.2| PREDICTED: Canis familiaris similar to heterogeneous nuclear ribonucleoprotein A0, transcript variant 1 (LOC481524), mRNA Length = 1775 Score = 42.1 bits (21), Expect = 5.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 291 ccagctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| ||| |||||||| ||||||| Sbjct: 1160 ccagctgctgccaccgccgccgccgccgccgcc 1128
>ref|XM_845859.1| PREDICTED: Canis familiaris similar to heterogeneous nuclear ribonucleoprotein A0, transcript variant 2 (LOC481524), mRNA Length = 1961 Score = 42.1 bits (21), Expect = 5.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 291 ccagctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| ||| |||||||| ||||||| Sbjct: 1160 ccagctgctgccaccgccgccgccgccgccgcc 1128
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 tcattcctcatcattttgttc 543 ||||||||||||||||||||| Sbjct: 112945 tcattcctcatcattttgttc 112925
>ref|NM_002247.2| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), transcript variant 2, mRNA Length = 6103 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 242 ctgctgcctccgccgccgccgccgccgcc 214
>ref|NM_001014797.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), transcript variant 1, mRNA Length = 11993 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 242 ctgctgcctccgccgccgccgccgccgcc 214
>gb|BC062659.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1, mRNA (cDNA clone IMAGE:4277048), complete cds Length = 891 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 237 ctgctgcctccgccgccgccgccgccgcc 209
>gb|BC024965.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1, mRNA (cDNA clone IMAGE:4447157), with apparent retained intron Length = 882 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 242 ctgctgcctccgccgccgccgccgccgcc 214
>gb|BC009695.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M, alpha member 1, mRNA (cDNA clone IMAGE:3900695), with apparent retained intron Length = 918 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 212 ctgctgcctccgccgccgccgccgccgcc 184
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 ccgtcgccgccggcgccgcct 324 ||||||||||||||||||||| Sbjct: 335931 ccgtcgccgccggcgccgcct 335911
>emb|AL731556.11| Human DNA sequence from clone RP11-428P16 on chromosome 10 Contains the 5' end of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, a novel zinc finger pseudogene (KIAA1629) and two CpG islands, complete sequence Length = 203003 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 79273 ctgctgcctccgccgccgccgccgccgcc 79301
>emb|AL512303.10| Human DNA sequence from clone RP1-249I4 on chromosome 6 Contains the KIAA0441 gene and a putative novel gene, complete sequence Length = 106408 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 692 ctgttgtgtttgaggcactgc 712 ||||||||||||||||||||| Sbjct: 33651 ctgttgtgtttgaggcactgc 33671
>emb|AL445933.32| Human DNA sequence from clone RP11-486B10 on chromosome 1 Contains the EDN2 gene for endothelin 2, the 3' end of the HIVEP3 gene for human immunodeficiency virus type I enhancer binding protein 3 and a novel gene, complete sequence Length = 154153 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 gagcttgctgcaggatgcttc 573 ||||||||||||||||||||| Sbjct: 126353 gagcttgctgcaggatgcttc 126333
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 45 ctgctgcctccgccgccgccgccgccgcc 17
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 412 ctgctgcctccgccgccgccgccgccgcc 384
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 321 ctgctgcctccgccgccgccgccgccgcc 293
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 tcattcctcatcattttgttc 543 ||||||||||||||||||||| Sbjct: 63602 tcattcctcatcattttgttc 63622
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 ccgtcgccgccggcgccgcct 324 ||||||||||||||||||||| Sbjct: 111230 ccgtcgccgccggcgccgcct 111210
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tgcctccgtcgccgccggcgc 319 ||||||||||||||||||||| Sbjct: 203896 tgcctccgtcgccgccggcgc 203876
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 tgcctccgtcgccgccggcgccgcc 323 |||| |||||||||||||||||||| Sbjct: 20069 tgccgccgtcgccgccggcgccgcc 20045
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 ccgtcgccgccggcgccgcct 324 ||||||||||||||||||||| Sbjct: 122885 ccgtcgccgccggcgccgcct 122865
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tgcctccgtcgccgccggcgc 319 ||||||||||||||||||||| Sbjct: 268646 tgcctccgtcgccgccggcgc 268626
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 tgcctccgtcgccgccggcgccgcc 323 |||| |||||||||||||||||||| Sbjct: 19978 tgccgccgtcgccgccggcgccgcc 19954
>gb|AC084866.5| Homo sapiens BAC clone RP11-6E9 from 4, complete sequence Length = 196852 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 gctgtcgggctggccatggcg 258 ||||||||||||||||||||| Sbjct: 103138 gctgtcgggctggccatggcg 103118
>emb|CR627384.1| Homo sapiens mRNA; cDNA DKFZp781N1049 (from clone DKFZp781N1049) Length = 1277 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 148 ctgctgcctccgccgccgccgccgccgcc 120
>dbj|AK119820.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-C08, full insert sequence Length = 2923 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 252 catggcgggctacggcgcctacctgctcg 280 ||||| |||| |||||||||||||||||| Sbjct: 2398 catggagggccacggcgcctacctgctcg 2426
>emb|BX547939.11| Zebrafish DNA sequence from clone CH211-201M19 in linkage group 19, complete sequence Length = 215708 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 cattttgttcatactagtaga 554 ||||||||||||||||||||| Sbjct: 18682 cattttgttcatactagtaga 18702
>gb|AC007869.2|AC007869 Genomic Sequence for Homo sapiens Clone 431C18 From Chromosome 8 (locus D8S1741), complete sequence Length = 196905 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 301 cctccgtcgccgccggcgccgcctccaag 329 |||||| |||||||| ||||||||||||| Sbjct: 33454 cctccgccgccgccgccgccgcctccaag 33426
>emb|AJ329333.1|HSA329333 Homo sapiens genomic sequence surrounding NotI site, clone NL6-BL17C Length = 675 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 gctgtcgggctggccatggcg 258 ||||||||||||||||||||| Sbjct: 7 gctgtcgggctggccatggcg 27
>gb|AF105372.1|AF105372 Homo sapiens large-conductance calcium-activated potassium channel alpha subunit gene, partial cds Length = 2022 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 1889 ctgctgcctccgccgccgccgccgccgcc 1861
>emb|AL929265.6| Mouse DNA sequence from clone RP23-316D8 on chromosome 2, complete sequence Length = 178882 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1148 agttctttcatttacatagtc 1168 ||||||||||||||||||||| Sbjct: 79521 agttctttcatttacatagtc 79501
>gb|U23767.1|HSU23767 Human calcium-activated potassium channel (hSlo) mRNA, complete cds Length = 3537 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 65 ctgctgcctccgccgccgccgccgccgcc 37
>gb|U13913.1|HSU13913 Human large-conductance calcium-activated potassium channel (hSlo) mRNA, complete cds Length = 4149 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 143 ctgctgcctccgccgccgccgccgccgcc 115
>emb|AJ001217.1|HSCGG10P5 Homo sapiens DNA for (CGG)n trinucleotide repeat region, isolate P5-5 (Chr.10) Length = 5365 Score = 42.1 bits (21), Expect = 5.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 ctgctgcctccgtcgccgccggcgccgcc 323 |||||||||||| |||||||| ||||||| Sbjct: 3509 ctgctgcctccgccgccgccgccgccgcc 3537 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 254,874,984 Number of extensions: 13891130 Number of successful extensions: 273293 Number of sequences better than 10.0: 84 Number of HSP's gapped: 273280 Number of HSP's successfully gapped: 109 Length of query: 1503 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1480 Effective length of database: 18,503,978,556 Effective search space: 27385888262880 Effective search space used: 27385888262880 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)