| Clone Name | FLbaf123c07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009085.1| Triticum aestivum clone wkm1c.pk005.m16:fis, full insert mRNA sequence Length = 654 Score = 900 bits (454), Expect = 0.0 Identities = 589/632 (93%), Gaps = 14/632 (2%) Strand = Plus / Plus Query: 443 gatggtctcctcttcggaccgctagatctggggctgttcttctcttatgtgggccttgct 502 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 9 gatggtctcctctttgggccactagatctggggctgttcttctcttatgtgggccttgct 68 Query: 503 tcaggaaggagtctggagcaggtgaaggaagatgtgaagagggatatcattcctgctcta 562 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 69 tcaggaaggagtctggagcaggtgaaggatgatgtgaagagggatatcattcctgctctg 128 Query: 563 gttttagggggagccatctggccggctgtgcagatcgcaaacttccgcttcattcccgtg 622 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 129 gttttagggggagccatctggccggctgtgcagatcgcaaactttcgcttcattcccgtg 188 Query: 623 cgatatcaactgctttacgtgaacttgttctgcctgttagacagttgtttcttgtcttgg 682 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 189 cgatatcaactgctgtacgtgaacttgttctgcctgttagacagctgtttcttgtcttgg 248 Query: 683 atcgagcagcaaggagatgcggcttggaagcaatggttcccatcgttccagaagaaaatt 742 |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 249 atcgagcaacaaggagacgcggcttggaagcaatggttcacatcgttccagaagaaaatc 308 Query: 743 gaagaccagaagagcaacgcctgatctgaatcatgattgaagaagacgcttgaccagaag 802 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gaagaccagaagagcaacgcttgatctgaatcatgattgaagaagacgcttgaccagaag 368 Query: 803 ttagcttccgtcattttgactgatatatccaggaagtatatcagttgctgccagcaggca 862 |||||||||||| |||| ||||||||||||||| ||||||||| ||||||||||| | Sbjct: 369 ttagcttccgtcgttttcactgatatatccagggagtatatcacttgctgccagcgg--- 425 Query: 863 tcatctgtttatgtggagttctggtggccagcgatactgggcatcactgtcatgtggaga 922 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 426 ----ctgtttatgtggagttctggtggccagcaatactgggcgtcactgtcatgtggaga 481 Query: 923 -tgatcattcttttttccacaactt-----cgatgagaaggcaatgctctcgtttaactt 976 ||||| || ||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 482 ttgatctttgttttttccacaactttaatgagatgagaaggcaatgctctcgtttagctt 541 Query: 977 tttgtttcgtaatagagcatttgttcatgctgtttgtttaacctgcagagcacgtatttt 1036 ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct: 542 tttgttttgtaaccgagcatttgttcatgctgtttgtttaacctgcagagcgcgta-ttt 600 Query: 1037 ttaacgagtattcactgtattccttgtgttgt 1068 |||||||||||||||||||||||| ||||||| Sbjct: 601 ttaacgagtattcactgtattcctagtgttgt 632
>ref|NM_001049011.1| Oryza sativa (japonica cultivar-group) Os01g0228300 (Os01g0228300) mRNA, complete cds Length = 991 Score = 456 bits (230), Expect = e-125 Identities = 410/470 (87%) Strand = Plus / Plus Query: 266 cccgaggataaagataaagagttcaaaattgattggaagagggtcggcatcacaagttca 325 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 227 cccgaggataaagataaagagttcaaaattgattggaagagggtgggcatcacaagctca 286 Query: 326 tttggatttgcttttgttggacctgtgggacattactggtatgattacttggattgtttg 385 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | || Sbjct: 287 tttggatttgcttttgttggaccagttggacattactggtatgaatacttggatcgcttc 346 Query: 386 gtccgacgaagataccagcctggttcgttcaaatttgtagcctcaaaggttgcagcagat 445 ||| | |||||||||||| | ||||||||||| || ||||| ||||| || ||| Sbjct: 347 atcctgaggagataccagcctaagaccttcaaatttgttgcgtcaaaagttgctgcggat 406 Query: 446 ggtctcctcttcggaccgctagatctggggctgttcttctcttatgtgggccttgcttca 505 |||||||| || ||||| ||||||| |||||||||| ||||| || ||||| ||| Sbjct: 407 ggtctcctatttggaccagtagatcttctcttgttcttctcatatgttggtcttgcatca 466 Query: 506 ggaaggagtctggagcaggtgaaggaagatgtgaagagggatatcattcctgctctagtt 565 ||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 467 ggaaggagtgtagagcaggtgaaggatgatgtgaagagggacttcattcctgctctagtt 526 Query: 566 ttagggggagccatctggccggctgtgcagatcgcaaacttccgcttcattcccgtgcga 625 |||||||| |||||||||| || ||||| |||||||| |||||||||||||| |||||| Sbjct: 527 ctagggggaaccatctggccagccgtgcaaatcgcaaatttccgcttcattcctgtgcga 586 Query: 626 tatcaactgctttacgtgaacttgttctgcctgttagacagttgtttcttgtcttggatc 685 ||||| || |||||||||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 587 tatcagctcctttacgtgaacctgttctgcctcttagacagttgcttcttgtcgtggatc 646 Query: 686 gagcagcaaggagatgcggcttggaagcaatggttcccatcgttccagaa 735 || || ||||||||||| ||||||||||||||||| |||| |||||||| Sbjct: 647 gatcaacaaggagatgcaccttggaagcaatggttcacatcattccagaa 696 Score = 167 bits (84), Expect = 1e-37 Identities = 120/132 (90%) Strand = Plus / Plus Query: 107 gggatgcggaggctatggcgatggtaccagcagtccctgtcctcctaccccgtgcggacg 166 ||||||||| |||||||||| ||||||||||||| |||| || || |||||||||| ||| Sbjct: 53 gggatgcggcggctatggcggtggtaccagcagtgcctggccacccaccccgtgcgcacg 112 Query: 167 caggtcgtcagctccggcatcctctgggccctcggcgacatcggcgcgcaggccgtcacc 226 ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 113 caggtggtcagctccggcatcctctggggcctcggcgacatcggcgcccaggccgtcacc 172 Query: 227 cacaaatccgcc 238 ||| | |||||| Sbjct: 173 cactactccgcc 184
>dbj|AK061358.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B09, full insert sequence Length = 991 Score = 448 bits (226), Expect = e-122 Identities = 409/470 (87%) Strand = Plus / Plus Query: 266 cccgaggataaagataaagagttcaaaattgattggaagagggtcggcatcacaagttca 325 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 227 cccgaggataaagataaagagttcaaaattgattggaagagggtgggcatcacaagctca 286 Query: 326 tttggatttgcttttgttggacctgtgggacattactggtatgattacttggattgtttg 385 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | || Sbjct: 287 tttggatttgcttttgttggaccagttggacattactggtatgaatacttggatcgcttc 346 Query: 386 gtccgacgaagataccagcctggttcgttcaaatttgtagcctcaaaggttgcagcagat 445 ||| | |||||||||||| | ||||||||||| || ||||| ||||| || ||| Sbjct: 347 atcctgaggagataccagcctaagaccttcaaatttgttgcgtcaaaagttgctgcggat 406 Query: 446 ggtctcctcttcggaccgctagatctggggctgttcttctcttatgtgggccttgcttca 505 |||||||| || ||||| ||||||| |||||||||| ||||| || ||||| ||| Sbjct: 407 ggtctcctatttggaccagtagatcttctcttgttcttctcatatgttggtcttgcatca 466 Query: 506 ggaaggagtctggagcaggtgaaggaagatgtgaagagggatatcattcctgctctagtt 565 ||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 467 ggaaggagtgtagagcaggtgaaggatgatgtgaagagggacttcattcctgctctagtt 526 Query: 566 ttagggggagccatctggccggctgtgcagatcgcaaacttccgcttcattcccgtgcga 625 |||||||| |||||||||| || ||||| |||||||| |||||||||||| | |||||| Sbjct: 527 ctagggggaaccatctggccagccgtgcaaatcgcaaatttccgcttcatttctgtgcga 586 Query: 626 tatcaactgctttacgtgaacttgttctgcctgttagacagttgtttcttgtcttggatc 685 ||||| || |||||||||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 587 tatcagctcctttacgtgaacctgttctgcctcttagacagttgcttcttgtcgtggatc 646 Query: 686 gagcagcaaggagatgcggcttggaagcaatggttcccatcgttccagaa 735 || || ||||||||||| ||||||||||||||||| |||| |||||||| Sbjct: 647 gatcaacaaggagatgcaccttggaagcaatggttcacatcattccagaa 696 Score = 167 bits (84), Expect = 1e-37 Identities = 120/132 (90%) Strand = Plus / Plus Query: 107 gggatgcggaggctatggcgatggtaccagcagtccctgtcctcctaccccgtgcggacg 166 ||||||||| |||||||||| ||||||||||||| |||| || || |||||||||| ||| Sbjct: 53 gggatgcggcggctatggcggtggtaccagcagtgcctggccacccaccccgtgcgcacg 112 Query: 167 caggtcgtcagctccggcatcctctgggccctcggcgacatcggcgcgcaggccgtcacc 226 ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 113 caggtggtcagctccggcatcctctggggcctcggcgacatcggcgcccaggccgtcacc 172 Query: 227 cacaaatccgcc 238 ||| | |||||| Sbjct: 173 cactactccgcc 184
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 307 bits (155), Expect = 5e-80 Identities = 281/323 (86%) Strand = Plus / Minus Query: 413 ttcaaatttgtagcctcaaaggttgcagcagatggtctcctcttcggaccgctagatctg 472 ||||||||||| || ||||| ||||| || ||||||||||| || ||||| ||||||| Sbjct: 7085490 ttcaaatttgttgcgtcaaaagttgctgcggatggtctcctatttggaccagtagatctt 7085431 Query: 473 gggctgttcttctcttatgtgggccttgcttcaggaaggagtctggagcaggtgaaggaa 532 |||||||||| ||||| || ||||| |||||||||||| | |||||||||||||| Sbjct: 7085430 ctcttgttcttctcatatgttggtcttgcatcaggaaggagtgtagagcaggtgaaggat 7085371 Query: 533 gatgtgaagagggatatcattcctgctctagttttagggggagccatctggccggctgtg 592 |||||||||||||| ||||||||||||||||| |||||||| |||||||||| || ||| Sbjct: 7085370 gatgtgaagagggacttcattcctgctctagttctagggggaaccatctggccagccgtg 7085311 Query: 593 cagatcgcaaacttccgcttcattcccgtgcgatatcaactgctttacgtgaacttgttc 652 || |||||||| |||||||||||||| ||||||||||| || |||||||||||| ||||| Sbjct: 7085310 caaatcgcaaatttccgcttcattcctgtgcgatatcagctcctttacgtgaacctgttc 7085251 Query: 653 tgcctgttagacagttgtttcttgtcttggatcgagcagcaaggagatgcggcttggaag 712 ||||| ||||||||||| |||||||| |||||||| || ||||||||||| |||||||| Sbjct: 7085250 tgcctcttagacagttgcttcttgtcgtggatcgatcaacaaggagatgcaccttggaag 7085191 Query: 713 caatggttcccatcgttccagaa 735 ||||||||| |||| |||||||| Sbjct: 7085190 caatggttcacatcattccagaa 7085168 Score = 167 bits (84), Expect = 1e-37 Identities = 120/132 (90%) Strand = Plus / Minus Query: 107 gggatgcggaggctatggcgatggtaccagcagtccctgtcctcctaccccgtgcggacg 166 ||||||||| |||||||||| ||||||||||||| |||| || || |||||||||| ||| Sbjct: 7088120 gggatgcggcggctatggcggtggtaccagcagtgcctggccacccaccccgtgcgcacg 7088061 Query: 167 caggtcgtcagctccggcatcctctgggccctcggcgacatcggcgcgcaggccgtcacc 226 ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 7088060 caggtggtcagctccggcatcctctggggcctcggcgacatcggcgcccaggccgtcacc 7088001 Query: 227 cacaaatccgcc 238 ||| | |||||| Sbjct: 7088000 cactactccgcc 7087989 Score = 159 bits (80), Expect = 3e-35 Identities = 92/96 (95%) Strand = Plus / Minus Query: 270 aggataaagataaagagttcaaaattgattggaagagggtcggcatcacaagttcatttg 329 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 7086870 aggataaagataaagagttcaaaattgattggaagagggtgggcatcacaagctcatttg 7086811 Query: 330 gatttgcttttgttggacctgtgggacattactggt 365 ||||||||||||||||||| || ||||||||||||| Sbjct: 7086810 gatttgcttttgttggaccagttggacattactggt 7086775
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 307 bits (155), Expect = 5e-80 Identities = 281/323 (86%) Strand = Plus / Minus Query: 413 ttcaaatttgtagcctcaaaggttgcagcagatggtctcctcttcggaccgctagatctg 472 ||||||||||| || ||||| ||||| || ||||||||||| || ||||| ||||||| Sbjct: 73070 ttcaaatttgttgcgtcaaaagttgctgcggatggtctcctatttggaccagtagatctt 73011 Query: 473 gggctgttcttctcttatgtgggccttgcttcaggaaggagtctggagcaggtgaaggaa 532 |||||||||| ||||| || ||||| |||||||||||| | |||||||||||||| Sbjct: 73010 ctcttgttcttctcatatgttggtcttgcatcaggaaggagtgtagagcaggtgaaggat 72951 Query: 533 gatgtgaagagggatatcattcctgctctagttttagggggagccatctggccggctgtg 592 |||||||||||||| ||||||||||||||||| |||||||| |||||||||| || ||| Sbjct: 72950 gatgtgaagagggacttcattcctgctctagttctagggggaaccatctggccagccgtg 72891 Query: 593 cagatcgcaaacttccgcttcattcccgtgcgatatcaactgctttacgtgaacttgttc 652 || |||||||| |||||||||||||| ||||||||||| || |||||||||||| ||||| Sbjct: 72890 caaatcgcaaatttccgcttcattcctgtgcgatatcagctcctttacgtgaacctgttc 72831 Query: 653 tgcctgttagacagttgtttcttgtcttggatcgagcagcaaggagatgcggcttggaag 712 ||||| ||||||||||| |||||||| |||||||| || ||||||||||| |||||||| Sbjct: 72830 tgcctcttagacagttgcttcttgtcgtggatcgatcaacaaggagatgcaccttggaag 72771 Query: 713 caatggttcccatcgttccagaa 735 ||||||||| |||| |||||||| Sbjct: 72770 caatggttcacatcattccagaa 72748 Score = 167 bits (84), Expect = 1e-37 Identities = 120/132 (90%) Strand = Plus / Minus Query: 107 gggatgcggaggctatggcgatggtaccagcagtccctgtcctcctaccccgtgcggacg 166 ||||||||| |||||||||| ||||||||||||| |||| || || |||||||||| ||| Sbjct: 75700 gggatgcggcggctatggcggtggtaccagcagtgcctggccacccaccccgtgcgcacg 75641 Query: 167 caggtcgtcagctccggcatcctctgggccctcggcgacatcggcgcgcaggccgtcacc 226 ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 75640 caggtggtcagctccggcatcctctggggcctcggcgacatcggcgcccaggccgtcacc 75581 Query: 227 cacaaatccgcc 238 ||| | |||||| Sbjct: 75580 cactactccgcc 75569 Score = 159 bits (80), Expect = 3e-35 Identities = 92/96 (95%) Strand = Plus / Minus Query: 270 aggataaagataaagagttcaaaattgattggaagagggtcggcatcacaagttcatttg 329 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 74450 aggataaagataaagagttcaaaattgattggaagagggtgggcatcacaagctcatttg 74391 Query: 330 gatttgcttttgttggacctgtgggacattactggt 365 ||||||||||||||||||| || ||||||||||||| Sbjct: 74390 gatttgcttttgttggaccagttggacattactggt 74355
>gb|AY110530.1| Zea mays CL17960_1 mRNA sequence Length = 849 Score = 220 bits (111), Expect = 8e-54 Identities = 374/461 (81%), Gaps = 3/461 (0%) Strand = Plus / Minus Query: 294 ttgattggaagagggtcggcatcacaagttcatttggatttgcttttgttggacctgtgg 353 |||||||||||||||| ||||||||||| || || ||||||||||||||||| || || | Sbjct: 666 ttgattggaagagggtgggcatcacaagctccttcggatttgcttttgttggtccagttg 607 Query: 354 gacattactggtatgattacttggattgtttggtccgacgaagataccagcctggttcgt 413 | |||||||||||||| ||| ||||| | | |||| || || | |||||| ||| Sbjct: 606 ggcattactggtatgaatacctggatcgcatcatccggcggaggtttcagcctaacacgt 547 Query: 414 tcaaatttgtagcctcaaaggttgcagcagatggtctcctcttcggaccgctagatctgg 473 ||||||| || |||||||| ||||| || ||||| ||||||||||||| ||||| || Sbjct: 546 tcaaattcgtcgcctcaaaagttgccgcggatggattcctcttcggaccactagacctcc 487 Query: 474 ggctgttcttctcttatgtgggccttgcttcaggaaggagtctggagcaggtgaaggaag 533 ||||||||||| ||||| || || | | ||||||||| | |||||||||||||| | Sbjct: 486 tcctgttcttctcatatgttggtctgggtcaaggaaggagcatagagcaggtgaaggagg 427 Query: 534 atgtgaagagggatatcattcctgctctagttttagggggagccatctggccggctgtgc 593 | ||||||||||| ||||||| ||||| || ||||| ||| |||||||||| ||||||| Sbjct: 426 acgtgaagagggacttcattccggctctggtgttaggcggaaccatctggcctgctgtgc 367 Query: 594 agatcgcaaacttccgcttcattcccgtgcgatatcaactgctttacgtgaacttgttct 653 ||||||| |||||||||||| |||||||||| || || || || || ||||||||||||| Sbjct: 366 agatcgcgaacttccgcttcgttcccgtgcggtaccagctcctgtatgtgaacttgttct 307 Query: 654 gcctgttagacagttgtttcttgtcttggatcgagcagcaaggagatgcggcttggaagc 713 |||| | ||||| || ||| |||| ||||| |||||||| || || || | ||||||| Sbjct: 306 gcctcctggacagctgcttcctgtcgtggattgagcagcagggtgacgcctcctggaagc 247 Query: 714 aatggttcccatcgttccagaagaaaattgaagaccagaag 754 |||||| | ||||||| ||||||| |||||||||||| Sbjct: 246 ggtggttcacttcgttcc---agaaaatcgaagaccagaag 209 Score = 79.8 bits (40), Expect = 2e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 175 cagctccggcatcctctgggccctcggcgacatcggcgcgcaggccgtcacc 226 |||||||||||||||||||| |||||||||||||||||| ||| |||||||| Sbjct: 809 cagctccggcatcctctggggcctcggcgacatcggcgcccagaccgtcacc 758
>emb|CT025607.9| Mouse DNA sequence from clone RP23-451F18 on chromosome 9, complete sequence Length = 187876 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 49 ttccttcctccctttcctcttctccc 74 |||||||||||||||||||||||||| Sbjct: 158689 ttccttcctccctttcctcttctccc 158714
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.28 Identities = 26/27 (96%) Strand = Plus / Minus Query: 197 ctcggcgacatcggcgcgcaggccgtc 223 |||||||||||||| |||||||||||| Sbjct: 1090338 ctcggcgacatcggtgcgcaggccgtc 1090312
>gb|AC074042.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-99G18, complete sequence Length = 226048 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Plus Query: 54 tcctccctttcctcttctccccc 76 ||||||||||||||||||||||| Sbjct: 83812 tcctccctttcctcttctccccc 83834
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete sequence Length = 191676 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 52 cttcctccctttcctcttctccc 74 ||||||||||||||||||||||| Sbjct: 4917 cttcctccctttcctcttctccc 4895
>ref|XM_420151.2| PREDICTED: Gallus gallus similar to Burkitt lymphoma receptor 1 isoform 2; Burkitt lymphoma receptor 1, GTP-binding protein; C-X-C chemokine receptor type 5; monocyte-derived receptor 15 (LOC422150), mRNA Length = 1803 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1003 atgctgtttgtttaacctgcagagca 1028 ||||||||||||| |||||||||||| Sbjct: 1038 atgctgtttgttttacctgcagagca 1013
>emb|CT990560.2| M.spretus DNA sequence from clone XX-CH35_359A6 on chromosome 7, complete sequence Length = 194774 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 cagctcccaccaccaccacgcc 259 |||||||||||||||||||||| Sbjct: 102767 cagctcccaccaccaccacgcc 102788
>gb|AC119573.9| Mus musculus chromosome 15, clone RP23-75H23, complete sequence Length = 216297 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 ttccttcctccctttcctcttc 70 |||||||||||||||||||||| Sbjct: 158344 ttccttcctccctttcctcttc 158365
>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete sequence Length = 175603 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 51 ccttcctccctttcctcttctc 72 |||||||||||||||||||||| Sbjct: 4325 ccttcctccctttcctcttctc 4304
>gb|AC121972.2| Mus musculus BAC clone RP24-276H18 from 2, complete sequence Length = 193641 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 42 ctcccacttccttcctccctttcctc 67 |||||||| ||||||||||||||||| Sbjct: 76034 ctcccactcccttcctccctttcctc 76059
>gb|AC163332.3| Mus musculus chromosome 15, clone RP24-344C17, complete sequence Length = 164408 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 ttccttcctccctttcctcttc 70 |||||||||||||||||||||| Sbjct: 148301 ttccttcctccctttcctcttc 148280
>gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosome 7, complete sequence Length = 213870 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 ccttcctccctttcctcttctc 72 |||||||||||||||||||||| Sbjct: 38329 ccttcctccctttcctcttctc 38350
>emb|CT010434.8| Mouse DNA sequence from clone RP23-225H9 on chromosome 17, complete sequence Length = 218000 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 cctccctttcctcttctccccc 76 |||||||||||||||||||||| Sbjct: 114652 cctccctttcctcttctccccc 114673
>gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, complete sequence Length = 182051 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 734 aagaaaattgaagaccagaaga 755 |||||||||||||||||||||| Sbjct: 59478 aagaaaattgaagaccagaaga 59457
>gb|AC158760.4| Mus musculus chromosome 5, clone RP23-319E24, complete sequence Length = 191682 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 ttccttcctccctttcctcttc 70 |||||||||||||||||||||| Sbjct: 77766 ttccttcctccctttcctcttc 77745
>gb|AC158299.7| Mus musculus chromosome 7, clone RP24-271L24, complete sequence Length = 185347 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 cagctcccaccaccaccacgcc 259 |||||||||||||||||||||| Sbjct: 132220 cagctcccaccaccaccacgcc 132241
>ref|XM_644975.1| Entamoeba histolytica HM-1:IMSS tubulin alpha chain (249.t00013) partial mRNA Length = 1368 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 979 tgtttcgtaatagagcatttgttcat 1004 ||||| |||||||||||||||||||| Sbjct: 1211 tgtttggtaatagagcatttgttcat 1236
>ref|NM_001012549.1| Gallus gallus neuroblastoma RAS viral (v-ras) oncogene homolog (NRAS), mRNA emb|AJ851798.1| Gallus gallus mRNA for hypothetical protein, clone 34f10 Length = 4825 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 ccgccagctcccaccaccacca 255 |||||||||||||||||||||| Sbjct: 175 ccgccagctcccaccaccacca 154
>emb|CR387150.1| Gallus gallus finished cDNA, clone ChEST270p1 Length = 1606 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1003 atgctgtttgtttaacctgcagagca 1028 ||||||||||||| |||||||||||| Sbjct: 855 atgctgtttgttttacctgcagagca 830
>emb|CR352716.1| Gallus gallus finished cDNA, clone ChEST39n5 Length = 1638 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1003 atgctgtttgtttaacctgcagagca 1028 ||||||||||||| |||||||||||| Sbjct: 889 atgctgtttgttttacctgcagagca 864
>emb|AJ311612.1|MMU311612 Mus musculus partial gene for NH3-dependent NAD+ synthetase-like protein, exons 1-10 Length = 109996 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 238 cagctcccaccaccaccacgcc 259 |||||||||||||||||||||| Sbjct: 68559 cagctcccaccaccaccacgcc 68538
>gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, complete sequence Length = 199130 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 48 cttccttcctccctttcctcttctcc 73 |||||||||||||||||||| ||||| Sbjct: 54306 cttccttcctccctttcctcctctcc 54281
>emb|BX545905.9| Mouse DNA sequence from clone RP23-339J7 on chromosome 2, complete sequence Length = 128574 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 42 ctcccacttccttcctccctttcctc 67 |||||||| ||||||||||||||||| Sbjct: 21367 ctcccactcccttcctccctttcctc 21392
>gb|AC111107.18| Mus musculus chromosome 5, clone RP23-195P3, complete sequence Length = 203785 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 ttccttcctccctttcctcttc 70 |||||||||||||||||||||| Sbjct: 46415 ttccttcctccctttcctcttc 46436
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 ctgggccctcggcgacatcggcgcg 214 |||||| |||||||||||||||||| Sbjct: 1839657 ctgggcactcggcgacatcggcgcg 1839633
>ref|XM_001156482.1| PREDICTED: Pan troglodytes low density lipoprotein-related protein 2, transcript variant 1 (LRP2), mRNA Length = 13866 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 6468 tggagcaggtgaaggaagatg 6448
>ref|XM_515882.2| PREDICTED: Pan troglodytes low density lipoprotein-related protein 2, transcript variant 2 (LRP2), mRNA Length = 15809 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 8411 tggagcaggtgaaggaagatg 8391
>gb|AC175311.4| Medicago truncatula clone mth2-45n8, complete sequence Length = 94417 Score = 42.1 bits (21), Expect = 4.3 Identities = 48/57 (84%) Strand = Plus / Plus Query: 626 tatcaactgctttacgtgaacttgttctgcctgttagacagttgtttcttgtcttgg 682 ||||| || ||||| |||||||| |||||| |||| || || || |||||||||||| Sbjct: 43342 tatcagctcctttatgtgaacttcttctgcttgttggatagctgcttcttgtcttgg 43398
>ref|XM_001104098.1| PREDICTED: Macaca mulatta low density lipoprotein-related protein 2, transcript variant 1 (LRP2), mRNA Length = 13734 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 6504 tggagcaggtgaaggaagatg 6484
>ref|XM_001104179.1| PREDICTED: Macaca mulatta low density lipoprotein-related protein 2, transcript variant 2 (LRP2), mRNA Length = 15677 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 8447 tggagcaggtgaaggaagatg 8427
>gb|AC139037.10| Mus musculus chromosome 5, clone RP23-310J14, complete sequence Length = 194093 Score = 42.1 bits (21), Expect = 4.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 48 cttccttcctccctttcctcttctccccc 76 ||||||||||||||| ||||| ||||||| Sbjct: 66129 cttccttcctcccttccctctcctccccc 66101
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 cttccttcctccctttcctct 68 ||||||||||||||||||||| Sbjct: 100150 cttccttcctccctttcctct 100130
>gb|AC132134.2| Mus musculus BAC clone RP23-267P6 from chromosome 5, complete sequence Length = 227078 Score = 42.1 bits (21), Expect = 4.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 48 cttccttcctccctttcctcttctccccc 76 ||||||||||||||| ||||| ||||||| Sbjct: 1748 cttccttcctcccttccctctcctccccc 1776
>gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosome 16, complete sequence Length = 202525 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 tcctccctttcctcttctccc 74 ||||||||||||||||||||| Sbjct: 135793 tcctccctttcctcttctccc 135813
>gb|AC131796.2| Mus musculus BAC clone RP24-493L24 from chromosome 18, complete sequence Length = 130790 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 cttccttcctccctttcctct 68 ||||||||||||||||||||| Sbjct: 17486 cttccttcctccctttcctct 17506
>gb|AY265358.1| Homo sapiens glycoprotein receptor gp330/megalin precursor, mRNA, complete cds Length = 14044 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 8189 tggagcaggtgaaggaagatg 8169
>gb|AY265357.1| Homo sapiens glycoprotein receptor gp330/megalin precursor, mRNA, complete cds Length = 14042 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 8192 tggagcaggtgaaggaagatg 8172
>gb|AC103925.2| Homo sapiens chromosome 1 clone RP11-567E21, complete sequence Length = 175291 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 ttcctccctttcctcttctcc 73 ||||||||||||||||||||| Sbjct: 27546 ttcctccctttcctcttctcc 27526
>ref|NM_069384.2| Caenorhabditis elegans F25H8.6 (F25H8.6) mRNA, complete cds Length = 2203 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 727 gttccagaagaaaattgaaga 747 ||||||||||||||||||||| Sbjct: 1044 gttccagaagaaaattgaaga 1064
>gb|AE012441.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 349 of 460 of the complete genome Length = 12660 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 cggcgacatcggcgcgcaggc 219 ||||||||||||||||||||| Sbjct: 3936 cggcgacatcggcgcgcaggc 3916
>gb|AC083913.2| Genomic sequence for Mus musculus, clone RP23-376A14, complete sequence Length = 218940 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 47 acttccttcctccctttcctcttct 71 |||||||||||||||||| |||||| Sbjct: 106127 acttccttcctccctttcttcttct 106103
>emb|Z69360.1|CEF25H8 Caenorhabditis elegans Cosmid F25H8, complete sequence Length = 32589 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 727 gttccagaagaaaattgaaga 747 ||||||||||||||||||||| Sbjct: 13666 gttccagaagaaaattgaaga 13686
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 actcccacttccttcctccct 61 ||||||||||||||||||||| Sbjct: 11479657 actcccacttccttcctccct 11479677
>ref|XM_691209.1| PREDICTED: Danio rerio similar to Mucin-2 precursor (Intestinal mucin 2) (LOC567901), partial mRNA Length = 3300 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 900 tgggcatcactgtcatgtgga 920 ||||||||||||||||||||| Sbjct: 337 tgggcatcactgtcatgtgga 357
>emb|CR937051.2|RN394C12 Rattus norvegicus chromosome 1 BAC CH230-394C12, complete sequence Length = 130117 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ccttcctccctttcctcttct 71 ||||||||||||||||||||| Sbjct: 90433 ccttcctccctttcctcttct 90413
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 cggcgacatcggcgcgcaggc 219 ||||||||||||||||||||| Sbjct: 1139071 cggcgacatcggcgcgcaggc 1139051
>emb|AL831872.1|HSM803194 Homo sapiens mRNA; cDNA DKFZp547A1310 (from clone DKFZp547A1310) Length = 3036 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 cctttcctcttctcccccgtc 79 ||||||||||||||||||||| Sbjct: 344 cctttcctcttctcccccgtc 364
>emb|AL844584.4| Mouse DNA sequence from clone RP23-309F17 on chromosome 11 Contains the 5' end of a variant of the Sgcd gene for sarcoglycan delta (dystrophin-associated glycoprotein) and a CpG island, complete sequence Length = 196442 Score = 42.1 bits (21), Expect = 4.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 42 ctcccacttccttcctccctttcctcttctccc 74 ||||| |||||||||||||| |||| ||||||| Sbjct: 59017 ctccctcttccttcctccctctccttttctccc 58985
>gb|AC150730.3| Atelerix albiventris clone LB4-141D24, complete sequence Length = 136615 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 987 aatagagcatttgttcatgctgttt 1011 ||||||||||||||||||| ||||| Sbjct: 49630 aatagagcatttgttcatgttgttt 49654
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 actcccacttccttcctccct 61 ||||||||||||||||||||| Sbjct: 33791 actcccacttccttcctccct 33811
>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence Length = 181148 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ttcctccctttcctcttctcc 73 ||||||||||||||||||||| Sbjct: 73093 ttcctccctttcctcttctcc 73113
>emb|BX908742.7| Zebrafish DNA sequence from clone DKEY-246G23 in linkage group 18, complete sequence Length = 232903 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 ttccttcctccctttcctctt 69 ||||||||||||||||||||| Sbjct: 79988 ttccttcctccctttcctctt 80008
>gb|AC007556.3| Homo sapiens BAC clone RP11-18C9 from 2, complete sequence Length = 167358 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 110856 tggagcaggtgaaggaagatg 110876
>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22 Length = 82035 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 caggtgaaggaagatgtgaag 541 ||||||||||||||||||||| Sbjct: 78155 caggtgaaggaagatgtgaag 78135
>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1114E07 Length = 135511 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 actcccacttccttcctccct 61 ||||||||||||||||||||| Sbjct: 93646 actcccacttccttcctccct 93666
>gb|AC091530.4| Papio anubis clone RP41-444A14, complete sequence Length = 162413 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 cccacttccttcctccctttc 64 ||||||||||||||||||||| Sbjct: 40372 cccacttccttcctccctttc 40392
>emb|BX276105.6| Zebrafish DNA sequence from clone CH211-194G2 in linkage group 1, complete sequence Length = 209486 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 864 catctgtttatgtggagttct 884 ||||||||||||||||||||| Sbjct: 128451 catctgtttatgtggagttct 128431
>gb|AE005072.1| Halobacterium sp. NRC-1 section 103 of 170 of the complete genome Length = 12639 Score = 42.1 bits (21), Expect = 4.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 197 ctcggcgacatcggcgcgcaggccg 221 |||||||||||||||||||| |||| Sbjct: 9823 ctcggcgacatcggcgcgcaagccg 9847
>gb|AC022517.1|AC022517 Homo sapiens chromosome 19, BC335474 (CIT-HSPC_482H14), complete sequence Length = 157566 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 cctttcctcttctcccccgtc 79 ||||||||||||||||||||| Sbjct: 125269 cctttcctcttctcccccgtc 125249
>emb|Z98266.1|HSZ98266 Homo sapiens gene encoding plakophilin (exons 1-13) Length = 49999 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ttcctccctttcctcttctcc 73 ||||||||||||||||||||| Sbjct: 41313 ttcctccctttcctcttctcc 41333
>ref|NM_004525.1| Homo sapiens low density lipoprotein-related protein 2 (LRP2), mRNA gb|U33837.1|HSU33837 Human glycoprotein receptor gp330 precursor, mRNA, complete cds Length = 14392 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 tggagcaggtgaaggaagatg 536 ||||||||||||||||||||| Sbjct: 8229 tggagcaggtgaaggaagatg 8209
>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete sequence Length = 200480 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 gttcatttggatttgcttttg 341 ||||||||||||||||||||| Sbjct: 187815 gttcatttggatttgcttttg 187795
>emb|Z73677.1|HSPLK2 H.sapiens gene encoding plakophilin 1b Length = 1648 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ttcctccctttcctcttctcc 73 ||||||||||||||||||||| Sbjct: 1361 ttcctccctttcctcttctcc 1381
>dbj|AK090405.1| Homo sapiens mRNA for FLJ00291 protein Length = 5134 Score = 42.1 bits (21), Expect = 4.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 cctttcctcttctcccccgtc 79 ||||||||||||||||||||| Sbjct: 4480 cctttcctcttctcccccgtc 4500 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 224,489,286 Number of extensions: 12805330 Number of successful extensions: 293648 Number of sequences better than 10.0: 69 Number of HSP's gapped: 293640 Number of HSP's successfully gapped: 80 Length of query: 1138 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1115 Effective length of database: 18,503,978,556 Effective search space: 20631936089940 Effective search space used: 20631936089940 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)