>Q76C99:RF1_ORYSA Rf1 protein, mitochondrial precursor - Oryza sativa (Rice)|
          Length = 791
 Score =  115 bits (288), Expect = 6e-25
 Identities = 86/337 (25%), Positives = 150/337 (44%)
 Frame = +1

Query: 535  PKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKL 714
            P   TY  L+  L ++G+   A+ +F  M ++G +P    Y  L+  Y   G L E   L
Sbjct: 299  PDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 358

Query: 715  LQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYC 894
            L  M  N +  PD Y +SILI A+    + D    ++ +M ++ + PN VT   V+   C
Sbjct: 359  LDLMVRNGI-HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417

Query: 895  RAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPET 1074
            ++GR++D       M++   S  ++   ++I  L     + E  E+   +    GI   T
Sbjct: 418  KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC-TCNKWERAEELILEMLDRGICLNT 476

Query: 1075 RTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQ 1254
              FN +I ++ K+    +   + E M R+       TYN +I  +  AG         + 
Sbjct: 477  IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 1255 MRSEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAED 1434
            M S G+KP+T T+  LING+   +     + + K  E   V P+   +N +L    +   
Sbjct: 537  MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 1435 LMEMERVFRHMKHMQCEPDAITYSILLEAYRKEGMTD 1545
                + ++  +     + +  TY+I+L    K  +TD
Sbjct: 597  TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 633



 Score =  104 bits (259), Expect = 1e-21
 Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 3/319 (0%)
 Frame = +1

Query: 619  MQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPL--CQPDVYTYSILIKAFVD 792
            M + GC P    Y  L+   C      EAL+LL  M  +      PDV +Y+ +I  F  
Sbjct: 149  MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 793  APRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVW 972
                D   + Y EM +R + P+ VT N +++  C+A  +D   ++L+ M+++    PD  
Sbjct: 209  EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG-VMPDCM 267

Query: 973  TMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYM 1152
            T N IL  + +SGQ +    + +K R  G+EP+  T+++L                M+Y+
Sbjct: 268  TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL----------------MDYL 311

Query: 1153 RRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALF 1332
                                + G        F+ M   G+KP+  T+  L+ G++     
Sbjct: 312  -------------------CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352

Query: 1333 HKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSIL 1512
             ++ G++ L  R  + P+    + ++ A AK   + +   VF  M+     P+A+TY  +
Sbjct: 353  VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412

Query: 1513 LEAYRKEG-MTDKMYALQQ 1566
            +    K G + D M   +Q
Sbjct: 413  IGILCKSGRVEDAMLYFEQ 431



 Score =  104 bits (259), Expect = 1e-21
 Identities = 74/359 (20%), Positives = 159/359 (44%), Gaps = 3/359 (0%)
 Frame = +1

Query: 532  YPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALK 711
            +P    +  L+    + G+   A  +F++M+QQG  P    Y A+IG  C++G +++A+ 
Sbjct: 368  HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 712  LLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGY 891
              + M    L  P    Y+ LI       +++  + +  EM +R +  NT+  N ++  +
Sbjct: 428  YFEQMIDEGL-SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 486

Query: 892  CRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPE 1071
            C+ GR+ + EKL   M+     KP+V T N +++ +  +G+++   K        G++P 
Sbjct: 487  CKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545

Query: 1072 TRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFN 1251
            T T++ LI  Y K    +    + + M          TYN +++   +       ++ + 
Sbjct: 546  TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 605

Query: 1252 QMRSEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAE 1431
            ++   G + +  T+  +++G     L    + M +    +D+       N ++ A  K  
Sbjct: 606  RITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVG 665

Query: 1432 DLMEMERVFRHMKHMQCEPDAITYSILLEAYRKEGM---TDKMYALQQENPSLVSTELV 1599
               E + +F         P+  TY ++ E    +G+    D+++   ++N   V + ++
Sbjct: 666  RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGML 724



 Score = 96.3 bits (238), Expect = 4e-19
 Identities = 68/270 (25%), Positives = 127/270 (47%)
 Frame = +1

Query: 484  QGALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTA 663
            + A+  FE + ++    P    Y  L+  L    +   A++L  EM  +G       + +
Sbjct: 423  EDAMLYFEQMIDEGLS-PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 664  LIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAER 843
            +I ++C+ G + E+ KL + M    + +P+V TY+ LI  +  A + D    +   M   
Sbjct: 482  IIDSHCKEGRVIESEKLFELMVRIGV-KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 844  SVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVEL 1023
             + PNTVT + +++GYC+  R++D   L   M ES+   PD+ T NIIL     + +   
Sbjct: 541  GLKPNTVTYSTLINGYCKISRMEDALVLFKEM-ESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 1024 MEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIE 1203
             ++ Y +    G + E  T+NI++    K ++ D    + + +  +       T+N +I+
Sbjct: 600  AKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMID 659

Query: 1204 AFAEAGDAKNMEDTFNQMRSEGMKPDTKTF 1293
            A  + G     +D F    S G+ P+  T+
Sbjct: 660  ALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score = 92.8 bits (229), Expect = 4e-18
 Identities = 77/330 (23%), Positives = 131/330 (39%), Gaps = 6/330 (1%)
 Frame = +1

Query: 589  PSLAQDLFTEMQQQGC-QPTPEL--YTALIGAYCRNGLLDEALKLLQDMKANPLCQPDVY 759
            P+ A   +  M + G  + TP+L  Y  LIG  CR G LD     L ++      + D  
Sbjct: 65   PAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGF-RVDAI 123

Query: 760  TYSILIKAF-VDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSA 936
             ++ L+K    D    D +D + + M E    PN  + NI+L G C   R  +  +LL  
Sbjct: 124  AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183

Query: 937  MLES--ANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGK 1110
            M +     S PDV +   +++ F   G  +     Y +    GI P+             
Sbjct: 184  MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDV------------ 231

Query: 1111 KRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKT 1290
                                    TYN++I A  +A       +  N M   G+ PD  T
Sbjct: 232  -----------------------VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 1291 FCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHMK 1470
            +  +++G+ ++    + +G +K      V P+   ++ ++    K    ME  ++F  M 
Sbjct: 269  YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 1471 HMQCEPDAITYSILLEAYRKEGMTDKMYAL 1560
                +P+  TY  LL+ Y  +G   +M+ L
Sbjct: 329  KRGLKPEITTYGTLLQGYATKGALVEMHGL 358



 Score = 72.8 bits (177), Expect = 5e-12
 Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 8/263 (3%)
 Frame = +1

Query: 772  LIKAFVDAPRFDLVDAM--YKEMAERS---VAPNTVTQNIVLSGYCRAGRLDDMEKLLSA 936
            L +A  D  R     A+  Y  MA      V P+  T  I++   CRAGRLD     L  
Sbjct: 53   LNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGN 112

Query: 937  MLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILI-GAYGKK 1113
            +++       +    ++  L  +    + M+    +    G  P   ++NIL+ G   + 
Sbjct: 113  VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172

Query: 1114 RMYDKMSA--VMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTK 1287
            R  + +    +M   R    P    +Y  VI  F + GD+     T+++M   G+ PD  
Sbjct: 173  RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV 232

Query: 1288 TFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHM 1467
            T+  +I     A    K + ++    +  V P+   +NS+L     +    E     + M
Sbjct: 233  TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292

Query: 1468 KHMQCEPDAITYSILLEAYRKEG 1536
            +    EPD +TYS+L++   K G
Sbjct: 293  RSDGVEPDVVTYSLLMDYLCKNG 315



 Score = 32.3 bits (72), Expect = 7.0
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
 Frame = +1

Query: 1183 TYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVVGMV-KL 1359
            TY  +I     AG           +  +G + D   F  L+ G          + +V + 
Sbjct: 89   TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148

Query: 1360 AERLDVPPNTSFHNSVLAACA---KAEDLMEMERVFRHMKHMQCEPDAITYSILLEAYRK 1530
               L   PN   +N +L       ++++ +E+  +    +     PD ++Y+ ++  + K
Sbjct: 149  MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 1531 EGMTDKMYALQQE 1569
            EG +DK Y+   E
Sbjct: 209  EGDSDKAYSTYHE 221

>P0C043:Y4791_ARATH Putative PPR-repeat protein At4g17915 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 463

 Score = 82.4 bits (202), Expect = 6e-15
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 1/265 (0%)
 Frame = +1

Query: 532  YPKEGTYMKLLLLLGRSGQPSLA-QDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEAL 708
            YP   +Y  L+    + G+   A + L+ ++Q  G  P P+ Y  L+ A C+ G +D AL
Sbjct: 115  YPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNAL 174

Query: 709  KLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSG 888
            +L ++M++    +P++ TY+ILI     + R      M  E+ +    PN VT   +L  
Sbjct: 175  ELFKEMQSR--FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKL 232

Query: 889  YCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEP 1068
            Y +  R+    +L   M     +  D +    ++S    +G+ +   ++ ++    G   
Sbjct: 233  YFKTRRIRRGLQLFLEMKREGYTY-DGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRH 291

Query: 1069 ETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTF 1248
            +  ++N L+  Y K    D +  ++  + R        T+  ++      G  +  E+ F
Sbjct: 292  DIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHF 351

Query: 1249 NQMRSEGMKPDTKTFCCLINGFSNA 1323
              M   G+  +  T  CL++G   A
Sbjct: 352  VSMGEMGIGLNLVTCNCLVDGLCKA 376



 Score = 81.6 bits (200), Expect = 1e-14
 Identities = 64/311 (20%), Positives = 130/311 (41%), Gaps = 1/311 (0%)
 Frame = +1

Query: 619  MQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAP 798
            M+  G +P    Y +LI    R  +LD  L L  +M    +  PD+++Y+ L+  +    
Sbjct: 74   MRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGI-YPDLWSYNTLMCCYFKLG 132

Query: 799  RFD-LVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWT 975
            + +     +YK++    + P   T N++L   C+ G +D+  +L   M   +  KP++ T
Sbjct: 133  KHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEM--QSRFKPELMT 190

Query: 976  MNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMR 1155
             NI+++    S +V   +    + +  G  P   T+  ++  Y K R   +   +   M+
Sbjct: 191  YNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMK 250

Query: 1156 RLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFH 1335
            R  + +    Y  V+ A  + G  K   +   ++  +G + D  ++  L+N +       
Sbjct: 251  REGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLD 310

Query: 1336 KVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILL 1515
             V  ++   ER  +  +   H  ++    +       E  F  M  M    + +T + L+
Sbjct: 311  AVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLV 370

Query: 1516 EAYRKEGMTDK 1548
            +   K G  D+
Sbjct: 371  DGLCKAGHVDR 381



 Score = 77.0 bits (188), Expect = 2e-13
 Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 1/242 (0%)
 Frame = +1

Query: 847  VAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELM 1026
            V P+ VT N ++SGYCR   +++   +   M + A  +PDV T N +++       ++ +
Sbjct: 44   VDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRD-AGIRPDVATYNSLIAGAARRLMLDHV 102

Query: 1027 EKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLA-FPWTTATYNNVIE 1203
               +++   +GI P+  ++N L+  Y K   +++   V+    +LA       TYN +++
Sbjct: 103  LYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLD 162

Query: 1204 AFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPP 1383
            A  + G   N  + F +M+S   KP+  T+  LING   +        M+   ++    P
Sbjct: 163  ALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTP 221

Query: 1384 NTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILLEAYRKEGMTDKMYALQ 1563
            N   + ++L    K   +    ++F  MK      D   Y  ++ A  K G T + Y   
Sbjct: 222  NAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYM 281

Query: 1564 QE 1569
            QE
Sbjct: 282  QE 283



 Score = 65.5 bits (158), Expect = 7e-10
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 1/235 (0%)
 Frame = +1

Query: 490  ALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALI 669
            AL++F+ ++ +  + P+  TY  L+  L +S +   A+ + TE+++ G  P    YT ++
Sbjct: 173  ALELFKEMQSR--FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTIL 230

Query: 670  GAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSV 849
              Y +   +   L+L  +MK       D Y Y  ++ A +   R        +E+  +  
Sbjct: 231  KLYFKTRRIRRGLQLFLEMKREGYTY-DGYAYFAVVSALIKTGRTKEAYEYMQELVRKGR 289

Query: 850  APNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELME 1029
              + V+ N +L+ Y + G LD ++ LL   +E    K D +T  II++    +GQ    E
Sbjct: 290  RHDIVSYNTLLNLYFKDGNLDAVDDLLGE-IERRGMKADEYTHTIIVNGLLRTGQTRRAE 348

Query: 1030 KWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMR-RLAFPWTTATYN 1191
            + +      GI     T N L+    K    D+     E M  +  + +T+  +N
Sbjct: 349  EHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHN 403



 Score = 56.2 bits (134), Expect = 5e-07
 Identities = 39/169 (23%), Positives = 78/169 (46%)
 Frame = +1

Query: 433 ACTVTEALADRIAAKNWQGALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLF 612
           A T T  L      +  +  LQ+F  +K + + Y     Y  ++  L ++G+   A +  
Sbjct: 223 AVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYA-YFAVVSALIKTGRTKEAYEYM 281

Query: 613 TEMQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVD 792
            E+ ++G +     Y  L+  Y ++G LD    LL +++   + + D YT++I++   + 
Sbjct: 282 QELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGM-KADEYTHTIIVNGLLR 340

Query: 793 APRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAM 939
             +    +  +  M E  +  N VT N ++ G C+AG +D   +   +M
Sbjct: 341 TGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESM 389



 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
 Frame = +1

Query: 1072 TRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFN 1251
            TR  NI + +  K R  +K  +++    RL       TYN +I  +      +       
Sbjct: 13   TRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTR 72

Query: 1252 QMRSEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAE 1431
            +MR  G++PD  T+  LI G +   +   V+ +        + P+   +N+++    K  
Sbjct: 73   RMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLG 132

Query: 1432 DLMEMERV-FRHMKHMQCEPDAITYSILLEAYRKEGMTDKMYALQQENPSLVSTELV 1599
               E  RV ++ ++     P   TY++LL+A  K G  D    L +E  S    EL+
Sbjct: 133  KHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSRFKPELM 189

>Q10451:YLE1_SCHPO Uncharacterized protein C1093.01 - Schizosaccharomyces pombe (Fission|
            yeast)
          Length = 1261

 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
 Frame = +1

Query: 598  AQDLFTE-MQQQGCQPTPELYTALIGAYCRNGLLDEA---LKLLQDMKANPLCQPDVYTY 765
            + +LF + M+  G  P    +  LI    R G  D+A   L + ++ K + + +P V+ Y
Sbjct: 871  SSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNV-KPSVFLY 929

Query: 766  SILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLE 945
            + ++     A R      +++EM E  + P +VT   V++  CR G     EKL + M  
Sbjct: 930  NAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMEN 989

Query: 946  SANSKPDVWTMNIILSLFGNSGQVELM---EK---WYEKFRGYGIEPETRTFNILIGAYG 1107
              N +P V   N ++       +V+ M   EK   +Y +     IEP + T+ +L+ AYG
Sbjct: 990  QPNYQPRVAPYNTMIQF-----EVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYG 1044

Query: 1108 --KKRMYDKMSAVMEYMRRLAFPWTTATY 1188
              K      + AV+E M R   P  +  Y
Sbjct: 1045 TLKPVNVGSVKAVLELMERTDVPILSMHY 1073



 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
 Frame = +1

Query: 490  ALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALI 669
            AL +FE  K      P    Y  +L  LGR+ + +    LF EM++ G  PT   Y  +I
Sbjct: 910  ALNIFEETKRHNVK-PSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVI 968

Query: 670  GAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAM--YKEMAER 843
             A CR G    A KL  +M+  P  QP V  Y+ +I+ F     F+   A+  Y  +   
Sbjct: 969  NAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQ-FEVQTMFNREKALFYYNRLCAT 1027

Query: 844  SVAPNTVTQNIVLSGY 891
             + P++ T  +++  Y
Sbjct: 1028 DIEPSSHTYKLLMDAY 1043



 Score = 36.2 bits (82), Expect = 0.48
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 18/219 (8%)
 Frame = +1

Query: 922  KLLSAMLESANSKPDVWTMNIILSLFGNSG----QVELMEKWYEKFRGYGIEPETRTFNI 1089
            K+ +  LE AN     W M +IL     S     Q +    + +  +  G  P   TF  
Sbjct: 839  KISTKSLEKAN-----WFMALILDAMILSSSFARQFKSSNLFCDNMKMLGYIPRASTFAH 893

Query: 1090 LIGAYGKKRMYDKMSA---VMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMR 1260
            LI    ++   D  +    + E  +R     +   YN V+     A         F +M+
Sbjct: 894  LINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMK 953

Query: 1261 SEGMKPDTKTFCCLINGFSNAALFHKVVGMVKLAERL--------DVPPNTSFHNSVLAA 1416
              G+ P + T+  +IN           +G   LAE+L        +  P  + +N+++  
Sbjct: 954  ESGLLPTSVTYGTVINAACR-------IGDESLAEKLFAEMENQPNYQPRVAPYNTMIQF 1006

Query: 1417 CAKAEDLMEMERVFRHMKHM---QCEPDAITYSILLEAY 1524
              + + +   E+   +   +     EP + TY +L++AY
Sbjct: 1007 --EVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAY 1043

>P42704:LPPRC_HUMAN 130 kDa leucine-rich protein - Homo sapiens (Human)|
          Length = 1273

 Score = 54.3 bits (129), Expect = 2e-06
 Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 4/202 (1%)
 Frame = +1

Query: 940  LESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRM 1119
            L+   +  DV   N +L ++  +        +  K     I+P   T+  LI +Y     
Sbjct: 32   LQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGD 91

Query: 1120 YDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCC 1299
             +  S ++ +M+    P T A ++ ++   A AGD +N E+    MR  G++P   T+  
Sbjct: 92   IEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLA 151

Query: 1300 LINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHMKHMQ 1479
            L+N ++       V   ++  E+ ++         ++ + +KA  L   ++ +   K   
Sbjct: 152  LLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGYLSMSQKFW---KKFT 208

Query: 1480 CE----PDAITYSILLEAYRKE 1533
            CE    PDA+   +LL   + E
Sbjct: 209  CERRYIPDAMNLILLLVTEKLE 230



 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 36/148 (24%), Positives = 67/148 (45%)
 Frame = +1

Query: 604  DLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKA 783
            D   +M++   QP    Y  LI +YC  G ++ A K+L  MK   L   +   +S L+  
Sbjct: 62   DFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEA-VFSALVTG 120

Query: 784  FVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKP 963
               A   +  + +   M +  + P   T   +L+ Y   G +D +++ L  + +      
Sbjct: 121  HARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLM 180

Query: 964  DVWTMNIILSLFGNSGQVELMEKWYEKF 1047
            D   + II S F  +G + + +K+++KF
Sbjct: 181  DRDLLQIIFS-FSKAGYLSMSQKFWKKF 207



 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 53/272 (19%), Positives = 112/272 (41%), Gaps = 2/272 (0%)
 Frame = +1

Query: 484  QGALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTA 663
            +GA ++   +K +      E  +  L+    R+G    A+++ T M+  G +P P+ Y A
Sbjct: 93   EGASKILGFMKTKDLPVT-EAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLA 151

Query: 664  LIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEM-AE 840
            L+ AY   G +D   + L+ ++   L   D     I+  +F  A    +    +K+   E
Sbjct: 152  LLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIF-SFSKAGYLSMSQKFWKKFTCE 210

Query: 841  RSVAPNTVTQNIVLSGYCRAGRLDDME-KLLSAMLESANSKPDVWTMNIILSLFGNSGQV 1017
            R   P+ +   ++L       +L+D+  ++L A   S    P V+    +      +  V
Sbjct: 211  RRYIPDAMNLILLLV----TEKLEDVALQILLACPVSKEDGPSVFGSFFLQHCVTMNTPV 266

Query: 1018 ELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTTATYNNV 1197
            E +  + +K +   +      F +       K   D   A+M+ ++   FP     +  +
Sbjct: 267  EKLTDYCKKLKEVQMHSFPLQFTLHCALLANKT--DLAKALMKAVKEEGFPIRPHYFWPL 324

Query: 1198 IEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTF 1293
            +    +  + + + +    M+  G+ PD +T+
Sbjct: 325  LVGRRKEKNVQGIIEILKGMQELGVHPDQETY 356

>Q8C2E4:PTCD1_MOUSE Pentatricopeptide repeat protein 1 - Mus musculus (Mouse)|
          Length = 695

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 11/186 (5%)
 Frame = +1

Query: 577  RSGQPSLAQDLFTE--MQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQP 750
            + G+ + A DLF    ++++  QP    YT LIG   R G L +A +L  DMK   L +P
Sbjct: 146  KEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDL-EP 204

Query: 751  DVYTYSILIKAFVDAPRFD--LVDA--MYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDM 918
               TY+ L     ++P  D  L  A  + +++  R+   N  T + +L     A +  D+
Sbjct: 205  SDATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLK---VAAKCADL 261

Query: 919  EKLLSAMLESANSKPDVWTMNIILSLFG-----NSGQVELMEKWYEKFRGYGIEPETRTF 1083
               L    E       V        L G      +G  + M+ W  +    GI+P    +
Sbjct: 262  RLCLDVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFRQAMQVW-RQMLSLGIKPSRHGY 320

Query: 1084 NILIGA 1101
            N+L+ A
Sbjct: 321  NLLLEA 326



 Score = 36.2 bits (82), Expect = 0.48
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 7/191 (3%)
 Frame = +1

Query: 994  LFGNSGQVELMEKWYEKFRGY---GIEPETRTFNILIGAYGKKRMYDK-MSAVMEYMRRL 1161
            L G  G+V  ++K +  F       +EP   T+  L     +    D  + + ++  ++L
Sbjct: 177  LIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQL 236

Query: 1162 A---FPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALF 1332
                F     TY+ +++  A+  D +   D F ++   G     +TFC L+         
Sbjct: 237  QARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLL--------- 287

Query: 1333 HKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSIL 1512
               VG ++          T F  ++              +V+R M  +  +P    Y++L
Sbjct: 288  ---VGCIQ-------DKKTGFRQAM--------------QVWRQMLSLGIKPSRHGYNLL 323

Query: 1513 LEAYRKEGMTD 1545
            LEA R  G+ D
Sbjct: 324  LEAARDCGLGD 334

>P32522:PT309_YEAST Protein PET309, mitochondrial precursor - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 965

 Score = 43.1 bits (100), Expect = 0.004
 Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 12/249 (4%)
 Frame = +1

Query: 487  GALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEM-QQQGCQPTPELYTA 663
            GA ++ + L E P     EG +  L+ +  ++    +AQ+LF  M +    Q T +  +A
Sbjct: 434  GAFRILKRLSEDPSVEITEGHFALLIQMCCKTTNHLIAQELFNLMTEHYNIQHTGKSISA 493

Query: 664  LIGAYCRNGLLDEALKLLQDMKANPLCQPD--VYTYSILIKAFVDAPRFDLVDAMYKEMA 837
            L+  Y  +    EA+ L +    N L   D  +  Y+  IKA++     +  + ++ ++ 
Sbjct: 494  LMDVYIESNRPTEAIALFEKHSKN-LSWRDGLISVYNKAIKAYIGLRNANKCEELFDKIT 552

Query: 838  ERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLS---AMLESANSKPDVWTMNIILSLFGNS 1008
               +A N+    +++         +D E  LS    +++ +  K D     II+  +   
Sbjct: 553  TSKLAVNSEFYKMMIKFLVTLN--EDCETALSIIDQLIKHSVIKVDATHFEIIMEAYDKE 610

Query: 1009 GQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMY------DKMSAVMEYMRRLAFP 1170
            G  + +   Y+      +   ++    ++ A  KK +       + ++ V + M   A  
Sbjct: 611  GYRDGIINLYKTMSQNKVPANSKILYYILKAVAKKSLQNNEEIKETINMVEDIMENAANG 670

Query: 1171 WTTATYNNV 1197
                TYN +
Sbjct: 671  TLDVTYNKL 679



 Score = 33.9 bits (76), Expect = 2.4
 Identities = 43/268 (16%), Positives = 104/268 (38%), Gaps = 5/268 (1%)
 Frame = +1

Query: 799  RFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTM 978
            +F   +A++    E ++   +     +L  YC    +     + S   +  +++ D    
Sbjct: 258  KFSSAEAVWNYKCEHNLPIVSSDLTCILKTYCH---MQKFNLVSSTYWKYPDAQHDQNQF 314

Query: 979  NIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRR 1158
            + +L         + +++ +    G G  P  + + IL+    +    D ++ +   + R
Sbjct: 315  DYLLVAHSRLHNWDALQQQFNALFGIGKLPSIQHYGILMYTMARIGELDSVNKLYTQLLR 374

Query: 1159 LAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHK 1338
                 T A   +++ A  + GD       F   +   + P T T   ++  +      + 
Sbjct: 375  RGMIPTYAVLQSLLYAHYKVGDFAACFSHFELFKKYDITPSTATHTIMLKVYRG---LND 431

Query: 1339 VVGMVKLAERLDVPPN---TSFHNSVL-AACAKAEDLMEMERVFRHM-KHMQCEPDAITY 1503
            + G  ++ +RL   P+   T  H ++L   C K  + +  + +F  M +H   +    + 
Sbjct: 432  LDGAFRILKRLSEDPSVEITEGHFALLIQMCCKTTNHLIAQELFNLMTEHYNIQHTGKSI 491

Query: 1504 SILLEAYRKEGMTDKMYALQQENPSLVS 1587
            S L++ Y +     +  AL +++   +S
Sbjct: 492  SALMDVYIESNRPTEAIALFEKHSKNLS 519

>Q8GWA9:Y2033_ARATH Putative PPR-repeat protein At2g17033 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 505

 Score = 42.4 bits (98), Expect = 0.007
 Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
 Frame = +1

Query: 826  KEMAERSVAPNTVTQ--NIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLF 999
            +E+ +RS +    TQ    ++SG C   +  D E+++  M      KP ++    +L  +
Sbjct: 231  REIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIEEM-RMEKIKPGLFEYKSVLYGY 289

Query: 1000 GNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLAFPWTT 1179
            G  G  + M +   +    G + +T   N+++ +YG      +M + ++ ++    P++ 
Sbjct: 290  GRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHDALPQMGSWLQKLKGFNVPFSI 349

Query: 1180 ATYNNVIEA 1206
             TYN+V+ +
Sbjct: 350  RTYNSVLNS 358



 Score = 36.2 bits (82), Expect = 0.48
 Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 10/211 (4%)
 Frame = +1

Query: 817  AMYKEMAERSVA---PNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTMNII 987
            ++Y E+ E S     P  + + I L    +  R D+ E LLS  +    S    +T+ + 
Sbjct: 151  SLYSEITEASWFDWNPKLIAELIALLN--KQERFDESETLLSTAVSRLKSNERDFTLFLC 208

Query: 988  LSLFGNSGQVELMEKWYEKFR-------GYGIEPETRTFNILIGAYGKKRMYDKMSAVME 1146
              +  NS Q  +       FR          +  +T+ +  ++              V+E
Sbjct: 209  NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268

Query: 1147 YMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAA 1326
             MR          Y +V+  +   G   +M    ++M +EG K DT     +++ +    
Sbjct: 269  EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328

Query: 1327 LFHKVVGMVKLAERLDVPPNTSFHNSVLAAC 1419
               ++   ++  +  +VP +   +NSVL +C
Sbjct: 329  ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSC 359

>Q5R655:PTCD1_PONPY Pentatricopeptide repeat protein 1 - Pongo pygmaeus (Orangutan)|
          Length = 698

 Score = 38.5 bits (88), Expect = 0.097
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
 Frame = +1

Query: 577  RSGQPSLAQDLFTE--MQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQP 750
            + G+   A DLF    ++++  QP    YTALIG   R G L +A  L   MK   L +P
Sbjct: 146  KEGKLVEALDLFERQMLKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDL-EP 204

Query: 751  DVYTYSILIKAFVDAPRFD--LVDA--MYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDM 918
               TY+ L     ++P  D  L  A  + +++  ++   N  T + +L     A +  D+
Sbjct: 205  SDATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLK---MAAKCADL 261

Query: 919  EKLLSAMLESANSKPDVWTMNIILSLFG-----NSGQVELMEKWYEKFRGYGIEPETRTF 1083
               L    E  +    V        L G      +G    ++ W       G++P   ++
Sbjct: 262  RMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVW-RLMLSLGLQPSRDSY 320

Query: 1084 NILIGA 1101
            N+L+ A
Sbjct: 321  NLLLVA 326



 Score = 37.7 bits (86), Expect = 0.17
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
 Frame = +1

Query: 1180 ATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVV-GMVK 1356
            + Y  +I      G  K     +NQM+   ++P   T+  L N  + +      +   +K
Sbjct: 172  SNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALK 231

Query: 1357 LAERLDVPP---NTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILLEAYR 1527
            L ++L       N   ++++L   AK  DL     VF+ + H        T+S LL    
Sbjct: 232  LRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCI 291

Query: 1528 KEGMTDKMYALQ 1563
            ++  T   YALQ
Sbjct: 292  QDKKTGFRYALQ 303



 Score = 33.1 bits (74), Expect = 4.1
 Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
 Frame = +1

Query: 991  SLFGNSGQVELMEK---WYEKFRGYGIEPETRTFNILIGAYGKKRMYDK-MSAVMEYMRR 1158
            +L G  G+V  ++K    Y + +   +EP   T+  L     +    D  + + ++  ++
Sbjct: 176  ALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQ 235

Query: 1159 LA---FPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGF--SNA 1323
            L    F     TY+ +++  A+  D +   D F ++  +G     +TF  L+ G      
Sbjct: 236  LQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKK 295

Query: 1324 ALFHKVVGMVKLAERLDVPPNTSFHNSVLAA 1416
              F   + + +L   L + P+   +N +L A
Sbjct: 296  TGFRYALQVWRLMLSLGLQPSRDSYNLLLVA 326

>Q12089:AEP3_YEAST ATPase expression protein 3 - Saccharomyces cerevisiae (Baker's|
            yeast)
          Length = 606

 Score = 38.1 bits (87), Expect = 0.13
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
 Frame = +1

Query: 826  KEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLE--SANSKPDVWTMNIILSLF 999
            K +A  S+  +  T  + +       +L+   KLL    +   +N K D   MN  + +F
Sbjct: 349  KVLAANSLPISRKTFYLCIERLLNEEQLETASKLLDYGFQHLKSNFKLDSEAMNHFMRVF 408

Query: 1000 GNSGQVELMEKWYEKFRG-YGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRL 1161
             N G+ +L    Y   R  Y I+P+++TF +L  A  +        AV++Y++ L
Sbjct: 409  ANKGRSDLAFLCYNTCRKIYKIKPDSQTFEMLFKALVRNGNTKNFGAVLQYIKDL 463



 Score = 35.4 bits (80), Expect = 0.82
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = +1

Query: 1138 VMEYMRRLAFPWTTAT--------YNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTF 1293
            V + +R L  P    T        YN+ I  F+E  D  +  + F QM++EG KP+T TF
Sbjct: 200  VRKMLRHLLHPTNKTTLPLRSAQVYNDSIYFFSEHFDFASCREIFAQMKAEGTKPNTITF 259

Query: 1294 CCLI 1305
              L+
Sbjct: 260  NLLL 263

>O75127:PTCD1_HUMAN Pentatricopeptide repeat protein 1 - Homo sapiens (Human)|
          Length = 700

 Score = 37.7 bits (86), Expect = 0.17
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
 Frame = +1

Query: 1180 ATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTFCCLINGFSNAALFHKVV-GMVK 1356
            + Y  +I      G  K   + +NQM+   ++P   T+  L N  + +      +   +K
Sbjct: 174  SNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALK 233

Query: 1357 LAERLDVPP---NTSFHNSVLAACAKAEDLMEMERVFRHMKHMQCEPDAITYSILLEAYR 1527
            L ++L       N   ++++L   AK  DL     VF+ + H        T+S LL    
Sbjct: 234  LRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCI 293

Query: 1528 KEGMTDKMYALQ 1563
            ++  T   YALQ
Sbjct: 294  QDKKTGFRYALQ 305



 Score = 37.0 bits (84), Expect = 0.28
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 11/186 (5%)
 Frame = +1

Query: 577  RSGQPSLAQDLFTE--MQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQP 750
            + G+   A DLF    ++++  QP    YT LIG   R G L +A  L   MK   L +P
Sbjct: 148  KEGKLVEALDLFERQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDL-EP 206

Query: 751  DVYTYSILIKAFVDAPRFD--LVDA--MYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDM 918
               TY+ L     ++P  D  L  A  + +++  ++   N  T + +L     A +  D+
Sbjct: 207  SDATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLK---MAAKCADL 263

Query: 919  EKLLSAMLESANSKPDVWTMNIILSLFG-----NSGQVELMEKWYEKFRGYGIEPETRTF 1083
               L    E  +    V        L G      +G    ++ W       G++P   ++
Sbjct: 264  RMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGFRYALQVW-RLMLSLGLQPSRDSY 322

Query: 1084 NILIGA 1101
            N+L+ A
Sbjct: 323  NLLLVA 328



 Score = 33.1 bits (74), Expect = 4.1
 Identities = 31/166 (18%), Positives = 67/166 (40%), Gaps = 6/166 (3%)
 Frame = +1

Query: 937  MLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAYGKKR 1116
            ML+    +P      +++   G  G ++     Y + +   +EP   T+  L     +  
Sbjct: 163  MLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESP 222

Query: 1117 MYDK-MSAVMEYMRRLA---FPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPDT 1284
              D  + + ++  ++L    F     TY+ +++  A+  D +   D F ++  +G     
Sbjct: 223  WKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTE 282

Query: 1285 KTFCCLINGF--SNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAA 1416
            +TF  L+ G        F   + + +L   L + P+   +N +L A
Sbjct: 283  ETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVA 328

>Q9Y566:SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 - Homo sapiens|
            (Human)
          Length = 2161

 Score = 37.0 bits (84), Expect = 0.28
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 57   PPPPGHCRRRHLRHSYTPPPLEGRRVPIPHHLPLLRHAAAP-ETPDHGASAPTSTVQGGR 233
            P PP H    H  H + PPP        P H P +    +P + P   A  P  +++G R
Sbjct: 992  PLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWR 1051

Query: 234  PGG 242
             GG
Sbjct: 1052 GGG 1054

>P48237:YG3M_YEAST Uncharacterized protein YGR150C - Saccharomyces cerevisiae (Baker's|
            yeast)
          Length = 864

 Score = 37.0 bits (84), Expect = 0.28
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 1024 MEKWYEKFRG-YGIEPETRTFNILIGAYGKKRMYDKMSAVMEYMRRLA---FPWTTATYN 1191
            M+ +  KFR  YGI P  +    +I  Y +K M  +     + M+ L+   FP    TYN
Sbjct: 303  MDYFITKFRDDYGITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFP-DICTYN 361

Query: 1192 NVIEAFAEAGDAKNMEDTFNQMRSEGMKPDTKTF 1293
             ++    +  +     D F +++   +KP T T+
Sbjct: 362  TMLRICEKERNFPKALDLFQEIQDHNIKPTTNTY 395

>Q9WV48:SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1 - Rattus norvegicus|
            (Rat)
          Length = 2167

 Score = 35.4 bits (80), Expect = 0.82
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 63   PPGHCRRRHLRHSYTPPPLEGRRVPIPHHLPLLRHAAAP-ETPDHGASAPTSTVQGGRPG 239
            PP H    H  H + PPP        P H P +    +P + P   A  P  +++G R G
Sbjct: 1002 PPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGG 1061

Query: 240  G 242
            G
Sbjct: 1062 G 1062

>Q84N48:CAF2P_MAIZE CRS2-associated factor 2, chloroplast precursor - Zea mays (Maize)|
          Length = 611

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
 Frame = +3

Query: 54  LPPPP------GHCRRRHLRHSYTPPPLEGRRVPIPHHLPL----------LRHAAAPET 185
           +PPPP       H  R +L  S +PPPL  RR P    LPL           +H+  P  
Sbjct: 1   MPPPPPQRPASSHVGRANL-FSASPPPLSNRRYPHHRSLPLPPVSPRRRDPKKHSQQPSQ 59

Query: 186 PDHGASAPTSTV 221
            +   S PT TV
Sbjct: 60  EEPTDSGPTRTV 71

>Q92552:RT27_HUMAN Mitochondrial 28S ribosomal protein S27 - Homo sapiens (Human)|
          Length = 414

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
 Frame = +1

Query: 1054 YGIEPETRTFNILIGAYGKKRMY-DKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAK 1230
            YGI P+  TFN+L+ ++ KK  Y D +S V E M + AF   +    ++   F     AK
Sbjct: 135  YGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCL--AK 192

Query: 1231 NMEDTFNQMRSEG---MKPDTKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHN 1401
              + ++ + R+ G   + P  K    +  GFS+    + ++G V+L + L       +HN
Sbjct: 193  KTDFSWEEERNFGASLLLPGLKQKNSV--GFSSQLYGYALLGKVELQQGL----RAVYHN 246

Query: 1402 SVL 1410
              L
Sbjct: 247  MPL 249

>Q9SHV5:CAP14_ARATH Putative clathrin assembly protein At2g01920 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 312

 Score = 34.3 bits (77), Expect = 1.8
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
 Frame = +1

Query: 862  VTQNIVLSGY-CR--AGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEK 1032
            +++ ++++G+ CR  AG L D++   S MLE ++++ D+  MNI+     +  Q E + K
Sbjct: 186  ISEVVLINGHICRGFAGFLSDVQ---SNMLEISSAEADL-AMNIVAK---SLSQREKLFK 238

Query: 1033 WYEKFRGYGIEPETRTFNILIGAYGKKRMYDKM 1131
            ++E  RG+G+     T NIL     +  + DK+
Sbjct: 239  YFEFCRGFGVTNAQETSNILRITESQMIVLDKL 271

>Q9Y4B5:K0802_HUMAN Uncharacterized protein KIAA0802 - Homo sapiens (Human)|
          Length = 1896

 Score = 33.5 bits (75), Expect = 3.1
 Identities = 22/74 (29%), Positives = 27/74 (36%)
 Frame = +3

Query: 18  HLHGASRRRERHLPPPPGHCRRRHLRHSYTPPPLEGRRVPIPHHLPLLRHAAAPETPDHG 197
           HLH  + RR  H  P P     + L H+         R P P         AAP +P+  
Sbjct: 28  HLHPVAERRRLHRAPSPARPFLKDLMHARPAAVPSSGRAPAP---------AAPRSPNLA 78

Query: 198 ASAPTSTVQGGRPG 239
             AP S      PG
Sbjct: 79  GKAPPSPGSLAAPG 92

>Q32PI8:RT27_BOVIN Mitochondrial 28S ribosomal protein S27 - Bos taurus (Bovine)|
          Length = 415

 Score = 33.5 bits (75), Expect = 3.1
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1054 YGIEPETRTFNILIGAYGKKRMY-DKMSAVMEYMRRLAF 1167
            YGI P+  TFN+L+  + KK  Y D +S V E M + AF
Sbjct: 135  YGIFPDNYTFNLLMDHFIKKENYKDALSVVFEIMMQEAF 173

>P47808:MYSH_ACACA High molecular weight form of myosin-1 - Acanthamoeba castellanii|
            (Amoeba)
          Length = 1577

 Score = 33.5 bits (75), Expect = 3.1
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
 Frame = +1

Query: 724  MKANPLCQPDVYTYSILIKAFVDAPR------FDLVDAMYKEMAERSVAPNTVTQNIVLS 885
            +  NP  +  +YT +++ +     P+      +++ D  Y+ M +     N + Q+I++S
Sbjct: 113  ISVNPFKRLPLYTPTVMDQYMHKVPKEMPPHTYNIADDAYRAMID-----NRMNQSILIS 167

Query: 886  GYCRAGRLDDMEKLLSAMLESANS----KPDVWTMNIILSLFGNS 1008
            G   AG+ +  ++ L+   E A S    + ++   N IL  FGN+
Sbjct: 168  GESGAGKTECTKQCLTYFAELAGSTNGVEQNILLANPILESFGNA 212

>P06729:CD2_HUMAN T-cell surface antigen CD2 precursor - Homo sapiens (Human)|
          Length = 351

 Score = 33.1 bits (74), Expect = 4.1
 Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +3

Query: 48  RHLPPPPGHCRRRHLRHSYTPPPLEGRRVPIPHHLPLLRHAAAPETPDH---GASAPTST 218
           +H PPPPGH   R    S+ PPP  G RV    H P  R  A   T  H   G   P   
Sbjct: 280 QHPPPPPGH---RSQAPSHRPPP-PGHRV---QHQPQKRPPAPSGTQVHQQKGPPLPRPR 332

Query: 219 VQGGRPGG 242
           VQ   P G
Sbjct: 333 VQPKPPHG 340

>O18303:YHS4_CAEEL Uncharacterized protein ZK849.4 - Caenorhabditis elegans|
          Length = 602

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 105 TPPPLEGRRVPIPHHLPLLRHAAAPETP 188
           +PPP E  R PIP+  P +   AAP +P
Sbjct: 565 SPPPAEANRAPIPNQQPQVNGNAAPASP 592

>O40955:POLN_RUBVR Non-structural polyprotein p200 - Rubella virus (strain vaccine|
           RA27/3) (RUBV)
          Length = 2116

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +3

Query: 60  PPPGHCRRRHLRHS---YTPPPLEGRRVPIPHHLPLLRHAAAPETPDHGA 200
           PPP  C RR  RHS    TPPP   R  P P   P     A    P   A
Sbjct: 727 PPPPRCARRSQRHSDARGTPPPAPARDPPPPAPSPPAPPRAGDPVPPTSA 776

>Q8BK72:RT27_MOUSE Mitochondrial 28S ribosomal protein S27 - Mus musculus (Mouse)|
          Length = 415

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1054 YGIEPETRTFNILIGAYGKKRMY-DKMSAVMEYMRRLAF 1167
            YGI P+  TFN+L+  + KK  Y D +S V E M + AF
Sbjct: 135  YGIFPDNFTFNLLMDYFIKKGNYKDALSVVFEIMMQEAF 173

>Q28640:HRG_RABIT Histidine-rich glycoprotein precursor - Oryctolagus cuniculus|
           (Rabbit)
          Length = 526

 Score = 32.0 bits (71), Expect = 9.1
 Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
 Frame = +3

Query: 24  HGASRRRERHLPPPPGHCRRRHLRHSYTP--PPLEGR--RVPIPHHLPLLRHAAAPETPD 191
           HG   R   H PPP GH       H + P  PP  G     P PH  P   H       D
Sbjct: 356 HGPPPRHPPHGPPPHGHPPHGPPPHGHPPHGPPPHGHPPHGPPPHGHPPHGHG----FHD 411

Query: 192 HGASAPTSTVQG 227
           HG   P S  +G
Sbjct: 412 HGPCDPPSHKEG 423

>Q60755:CALCR_MOUSE Calcitonin receptor precursor - Mus musculus (Mouse)|
          Length = 515

 Score = 32.0 bits (71), Expect = 9.1
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = -2

Query: 1191 IVSGGRPWKR*PAHVFHHRRHL-----VIHPFLPVSTNENVERPSLRLDPIASEFL---- 1039
            +V  G   +R P H+FHH  H+      + P LP+  +E       ++DP ASE +    
Sbjct: 205  VVPNGDLVRRDPMHIFHHNTHMWTMQWELSPPLPLCAHEG------KMDPHASEVISCKV 258

Query: 1038 IPLLHQ 1021
            +  LHQ
Sbjct: 259  LHFLHQ 264

>P58937:BCSC_PSEFL Cellulose synthase operon protein C precursor - Pseudomonas|
           fluorescens
          Length = 1279

 Score = 32.0 bits (71), Expect = 9.1
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
 Frame = +1

Query: 646 PELYTALIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAF-------VDAPRF 804
           P+  + LI    ++G  DEALKL+  +      Q   +  S+ I A        +   R 
Sbjct: 418 PDALSGLINVLSQSGQPDEALKLIDSVSP---AQRAKFAPSVKINALRATQVGKLAEQRG 474

Query: 805 DL--VDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWTM 978
           DL    A Y++  +     N  T+  +   Y R G++ +   L+  +L+S  ++PD    
Sbjct: 475 DLKAAQAAYRQALDAD-PENPWTRFALARMYLRDGQIRNARALIDGLLKSQPNQPDALYT 533

Query: 979 NIILS 993
           + +LS
Sbjct: 534 STLLS 538


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 297,918,247
Number of extensions: 6759428
Number of successful extensions: 19303
Number of sequences better than 10.0: 26
Number of HSP's gapped: 19175
Number of HSP's successfully gapped: 51
Length of query: 622
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 503
Effective length of database: 68,045,334
Effective search space: 34226803002
Effective search space used: 34226803002
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)