ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf117m10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001055563.1| Oryza sativa (japonica cultivar-group) Os03g... 281 2e-72
2dbj|AK060572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 2e-72
3gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 202 1e-48
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 202 1e-48
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.043
6dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.043
7gb|AC092067.2| Homo sapiens chromosome 19 clone CTB-184G21, comp... 46 0.17
8gb|AC011555.5|AC011555 Homo sapiens chromosome 19 clone LLNLR-28... 46 0.17
9gb|AF454455.1| Wheat streak mosaic virus isolate Turkey 1, compl... 44 0.67
10gb|AF285169.1|AF285169 Wheat streak mosaic virus type strain com... 44 0.67
11gb|AF329446.1|AF329446 Expression vector pWSMV-S1RN, complete se... 44 0.67
12gb|AF057533.1| Wheat streak mosaic virus strain Sidney 81, compl... 44 0.67
13gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, co... 42 2.7
14ref|XM_743495.1| Aspergillus fumigatus Af293 hypothetical protei... 42 2.7
15gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, co... 42 2.7
16gb|AC022467.7|AC022467 Homo sapiens chromosome 15 clone CTD-3247... 42 2.7
17gb|AC084757.2|AC084757 Homo sapiens chromosome 15 clone RP11-227... 42 2.7
18gb|AC009310.3| Homo sapiens BAC clone RP11-302A6 from 2, complet... 42 2.7
19emb|CR974430.11| Mouse DNA sequence from clone RP23-373C24 on ch... 42 2.7
20emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chro... 42 2.7 
>ref|NM_001055563.1| Oryza sativa (japonica cultivar-group) Os03g0159200 (Os03g0159200)
            mRNA, complete cds
          Length = 1571
 Score =  281 bits (142), Expect = 2e-72
 Identities = 202/222 (90%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggaggaagaaagatggacgctctgagggtttgggaaacaaagaaatggataagaaaattg 61
            |||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||| 
Sbjct: 1023 ggaggaagaaagatggccgcgctgagggtttggggaataaagaaatggataagaaaattt 1082

                                                                        
Query: 62   cagaactagggtttgctggtggcaagtcgaagtccttgtatggaaaacaagggcatttgg 121
            |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 1083 cagaactaggttttgctggtggcaagtcgaagtccttgtatggaaaggaagggcacttgg 1142

                                                                        
Query: 122  gtctgacacttatcaagttcgcgaacaacccatctggcttgaaggaggctgagcgccttg 181
            || |||||||||||||||| || |||| |||| |||||||||||||||||||||||||||
Sbjct: 1143 gtttgacacttatcaagtttgcaaacagcccagctggcttgaaggaggctgagcgccttg 1202

                                                      
Query: 182  ctgagtttctcgagaagcaagatcatggacgtgtaggttggt 223
            |||| || || |||| |||||||||||||||| | |||||||
Sbjct: 1203 ctgatttccttgagaggcaagatcatggacgtattggttggt 1244



 Score =  143 bits (72), Expect = 1e-30
 Identities = 134/154 (87%), Gaps = 3/154 (1%)
 Strand = Plus / Plus

                                                                        
Query: 264  ccctttgctggttgagactgataacagg---ggtgagaaaatgagaatactttatgggtg 320
            |||||| |||||||| || |||||||||   || ||||||| ||| ||||||||||||| 
Sbjct: 1285 ccctttactggttgaaacagataacaggacaggcgagaaaaggaggatactttatgggta 1344

                                                                        
Query: 321  cctagcaatttcctctgatctggatgaattagactcagattcaagaaaaagggctactgt 380
            |||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| |  |
Sbjct: 1345 cctagcaatttcatctgatatggatgaattagactctgattcaaggaaaagggcttccct 1404

                                              
Query: 381  caagagcagaaaagaatttgacccatctgattag 414
            ||||||||  | ||||||||||||||||||||||
Sbjct: 1405 caagagcaagagagaatttgacccatctgattag 1438
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>dbj|AK060572.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-C08, full
            insert sequence
          Length = 1571

 Score =  281 bits (142), Expect = 2e-72
 Identities = 202/222 (90%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggaggaagaaagatggacgctctgagggtttgggaaacaaagaaatggataagaaaattg 61
            |||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||| 
Sbjct: 1023 ggaggaagaaagatggccgcgctgagggtttggggaataaagaaatggataagaaaattt 1082

                                                                        
Query: 62   cagaactagggtttgctggtggcaagtcgaagtccttgtatggaaaacaagggcatttgg 121
            |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 1083 cagaactaggttttgctggtggcaagtcgaagtccttgtatggaaaggaagggcacttgg 1142

                                                                        
Query: 122  gtctgacacttatcaagttcgcgaacaacccatctggcttgaaggaggctgagcgccttg 181
            || |||||||||||||||| || |||| |||| |||||||||||||||||||||||||||
Sbjct: 1143 gtttgacacttatcaagtttgcaaacagcccagctggcttgaaggaggctgagcgccttg 1202

                                                      
Query: 182  ctgagtttctcgagaagcaagatcatggacgtgtaggttggt 223
            |||| || || |||| |||||||||||||||| | |||||||
Sbjct: 1203 ctgatttccttgagaggcaagatcatggacgtattggttggt 1244



 Score =  143 bits (72), Expect = 1e-30
 Identities = 134/154 (87%), Gaps = 3/154 (1%)
 Strand = Plus / Plus

                                                                        
Query: 264  ccctttgctggttgagactgataacagg---ggtgagaaaatgagaatactttatgggtg 320
            |||||| |||||||| || |||||||||   || ||||||| ||| ||||||||||||| 
Sbjct: 1285 ccctttactggttgaaacagataacaggacaggcgagaaaaggaggatactttatgggta 1344

                                                                        
Query: 321  cctagcaatttcctctgatctggatgaattagactcagattcaagaaaaagggctactgt 380
            |||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| |  |
Sbjct: 1345 cctagcaatttcatctgatatggatgaattagactctgattcaaggaaaagggcttccct 1404

                                              
Query: 381  caagagcagaaaagaatttgacccatctgattag 414
            ||||||||  | ||||||||||||||||||||||
Sbjct: 1405 caagagcaagagagaatttgacccatctgattag 1438
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score =  202 bits (102), Expect = 1e-48
 Identities = 147/162 (90%)
 Strand = Plus / Plus

                                                                         
Query: 62    cagaactagggtttgctggtggcaagtcgaagtccttgtatggaaaacaagggcatttgg 121
             |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 80493 cagaactaggttttgctggtggcaagtcgaagtccttgtatggaaaggaagggcacttgg 80552

                                                                         
Query: 122   gtctgacacttatcaagttcgcgaacaacccatctggcttgaaggaggctgagcgccttg 181
             || |||||||||||||||| || |||| |||| |||||||||||||||||||||||||||
Sbjct: 80553 gtttgacacttatcaagtttgcaaacagcccagctggcttgaaggaggctgagcgccttg 80612

                                                       
Query: 182   ctgagtttctcgagaagcaagatcatggacgtgtaggttggt 223
             |||| || || |||| |||||||||||||||| | |||||||
Sbjct: 80613 ctgatttccttgagaggcaagatcatggacgtattggttggt 80654



 Score =  143 bits (72), Expect = 1e-30
 Identities = 134/154 (87%), Gaps = 3/154 (1%)
 Strand = Plus / Plus

                                                                         
Query: 264   ccctttgctggttgagactgataacagg---ggtgagaaaatgagaatactttatgggtg 320
             |||||| |||||||| || |||||||||   || ||||||| ||| ||||||||||||| 
Sbjct: 80695 ccctttactggttgaaacagataacaggacaggcgagaaaaggaggatactttatgggta 80754

                                                                         
Query: 321   cctagcaatttcctctgatctggatgaattagactcagattcaagaaaaagggctactgt 380
             |||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| |  |
Sbjct: 80755 cctagcaatttcatctgatatggatgaattagactctgattcaaggaaaagggcttccct 80814

                                               
Query: 381   caagagcagaaaagaatttgacccatctgattag 414
             ||||||||  | ||||||||||||||||||||||
Sbjct: 80815 caagagcaagagagaatttgacccatctgattag 80848



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                        
Query: 2     ggaggaagaaagatggacgctctgagggtttgggaaacaaagaaatggataagaaaatt 60
             |||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 79208 ggaggaagaaagatggccgcgctgagggtttggggaataaagaaatggataagaaaatt 79266
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  202 bits (102), Expect = 1e-48
 Identities = 147/162 (90%)
 Strand = Plus / Plus

                                                                           
Query: 62      cagaactagggtttgctggtggcaagtcgaagtccttgtatggaaaacaagggcatttgg 121
               |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 3157591 cagaactaggttttgctggtggcaagtcgaagtccttgtatggaaaggaagggcacttgg 3157650

                                                                           
Query: 122     gtctgacacttatcaagttcgcgaacaacccatctggcttgaaggaggctgagcgccttg 181
               || |||||||||||||||| || |||| |||| |||||||||||||||||||||||||||
Sbjct: 3157651 gtttgacacttatcaagtttgcaaacagcccagctggcttgaaggaggctgagcgccttg 3157710

                                                         
Query: 182     ctgagtttctcgagaagcaagatcatggacgtgtaggttggt 223
               |||| || || |||| |||||||||||||||| | |||||||
Sbjct: 3157711 ctgatttccttgagaggcaagatcatggacgtattggttggt 3157752



 Score =  143 bits (72), Expect = 1e-30
 Identities = 134/154 (87%), Gaps = 3/154 (1%)
 Strand = Plus / Plus

                                                                           
Query: 264     ccctttgctggttgagactgataacagg---ggtgagaaaatgagaatactttatgggtg 320
               |||||| |||||||| || |||||||||   || ||||||| ||| ||||||||||||| 
Sbjct: 3157793 ccctttactggttgaaacagataacaggacaggcgagaaaaggaggatactttatgggta 3157852

                                                                           
Query: 321     cctagcaatttcctctgatctggatgaattagactcagattcaagaaaaagggctactgt 380
               |||||||||||| |||||| |||||||||||||||| |||||||| ||||||||| |  |
Sbjct: 3157853 cctagcaatttcatctgatatggatgaattagactctgattcaaggaaaagggcttccct 3157912

                                                 
Query: 381     caagagcagaaaagaatttgacccatctgattag 414
               ||||||||  | ||||||||||||||||||||||
Sbjct: 3157913 caagagcaagagagaatttgacccatctgattag 3157946



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                          
Query: 2       ggaggaagaaagatggacgctctgagggtttgggaaacaaagaaatggataagaaaatt 60
               |||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 3156306 ggaggaagaaagatggccgcgctgagggtttggggaataaagaaatggataagaaaatt 3156364
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.043
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 454      tttgcattgaaacatctgtatctt 477
                ||||||||||||||||||||||||
Sbjct: 25068994 tttgcattgaaacatctgtatctt 25069017
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>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0025J22
          Length = 175355

 Score = 48.1 bits (24), Expect = 0.043
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 454    tttgcattgaaacatctgtatctt 477
              ||||||||||||||||||||||||
Sbjct: 125110 tttgcattgaaacatctgtatctt 125133
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>gb|AC092067.2| Homo sapiens chromosome 19 clone CTB-184G21, complete sequence
          Length = 61958

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 414   gtctcctcacaaaggcccaccatcccg 440
             ||||||||||| |||||||||||||||
Sbjct: 46774 gtctcctcacagaggcccaccatcccg 46748
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>gb|AC011555.5|AC011555 Homo sapiens chromosome 19 clone LLNLR-280G7, complete sequence
          Length = 42546

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 414   gtctcctcacaaaggcccaccatcccg 440
             ||||||||||| |||||||||||||||
Sbjct: 36512 gtctcctcacagaggcccaccatcccg 36486
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>gb|AF454455.1| Wheat streak mosaic virus isolate Turkey 1, complete genome
          Length = 9384

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 379  gtcaagagcagaaaagaatttg 400
            ||||||||||||||||||||||
Sbjct: 2375 gtcaagagcagaaaagaatttg 2396
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>gb|AF285169.1|AF285169 Wheat streak mosaic virus type strain complete genome
          Length = 9384

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 379  gtcaagagcagaaaagaatttg 400
            ||||||||||||||||||||||
Sbjct: 2375 gtcaagagcagaaaagaatttg 2396
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>gb|AF329446.1|AF329446 Expression vector pWSMV-S1RN, complete sequence
          Length = 13103

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 379  gtcaagagcagaaaagaatttg 400
            ||||||||||||||||||||||
Sbjct: 2378 gtcaagagcagaaaagaatttg 2399
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>gb|AF057533.1| Wheat streak mosaic virus strain Sidney 81, complete genome
          Length = 9384

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 379  gtcaagagcagaaaagaatttg 400
            ||||||||||||||||||||||
Sbjct: 2375 gtcaagagcagaaaagaatttg 2396
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>gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, complete sequence
          Length = 165840

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     caaagaaatggataagaaaat 59
              |||||||||||||||||||||
Sbjct: 133829 caaagaaatggataagaaaat 133849
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>ref|XM_743495.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g02660)
           partial mRNA
          Length = 453

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 501 acatgctactgctgtgctccagata 525
           ||||||| |||||||||||||||||
Sbjct: 318 acatgctgctgctgtgctccagata 294
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>gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, complete sequence
          Length = 165879

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     caaagaaatggataagaaaat 59
              |||||||||||||||||||||
Sbjct: 147457 caaagaaatggataagaaaat 147437
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>gb|AC022467.7|AC022467 Homo sapiens chromosome 15 clone CTD-3247H4 map 15q21, complete sequence
          Length = 193703

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 24     tgagggtttgggaaacaaaga 44
              |||||||||||||||||||||
Sbjct: 170658 tgagggtttgggaaacaaaga 170678
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>gb|AC084757.2|AC084757 Homo sapiens chromosome 15 clone RP11-227D13 map 15q21.1, complete
             sequence
          Length = 157348

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    tgagggtttgggaaacaaaga 44
             |||||||||||||||||||||
Sbjct: 20032 tgagggtttgggaaacaaaga 20052
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>gb|AC009310.3| Homo sapiens BAC clone RP11-302A6 from 2, complete sequence
          Length = 89977

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 463 aaacatctgtatcttctgtca 483
           |||||||||||||||||||||
Sbjct: 231 aaacatctgtatcttctgtca 251
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>emb|CR974430.11| Mouse DNA sequence from clone RP23-373C24 on chromosome 17, complete
              sequence
          Length = 199120

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 569    tattcctgggatttattttgt 589
              |||||||||||||||||||||
Sbjct: 186792 tattcctgggatttattttgt 186772
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>emb|AL359352.21| Mouse DNA sequence from clone CT7-350K7 on chromosome 17, complete
             sequence
          Length = 162935

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 569   tattcctgggatttattttgt 589
             |||||||||||||||||||||
Sbjct: 95196 tattcctgggatttattttgt 95176


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 150,845,529
Number of extensions: 8423310
Number of successful extensions: 157527
Number of sequences better than 10.0: 20
Number of HSP's gapped: 157527
Number of HSP's successfully gapped: 26
Length of query: 711
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 689
Effective length of database: 18,508,616,841
Effective search space: 12752437003449
Effective search space used: 12752437003449
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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