ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf125f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95500.1|WHTWIR1APR Wheat WIR1A gene, complete cds 48 0.043
2gb|AC155651.4| Mus musculus 6 BAC RP24-111E13 (Roswell Park Canc... 44 0.67
3gb|AC158664.5| Mus musculus 6 BAC RP23-24F17 (Roswell Park Cance... 44 0.67
4gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Ca... 42 2.7
5emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cos... 42 2.7
6dbj|BS000223.1| Pan troglodytes chromosome 22 clone:RP43-010G23,... 42 2.7
7emb|AL163246.2|HS21C046 Homo sapiens chromosome 21 segment HS21C046 42 2.7
8gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 42 2.7
9dbj|AP005242.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.7
10emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003 42 2.7
11emb|AJ006995.1| Homo sapiens chromosome 21 PAC LLNLP704F18108Q13... 42 2.7
12emb|AL049911.2| Homo sapiens chromosome 21 PAC RPCIP704C216Q2, c... 42 2.7

>gb|M95500.1|WHTWIR1APR Wheat WIR1A gene, complete cds
          Length = 842
 Score = 48.1 bits (24), Expect = 0.043
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 95  ggtgctcctccagatcgctctcttcgtc 122
           ||||||||| ||||||||||||||||||
Sbjct: 200 ggtgctcctgcagatcgctctcttcgtc 227



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>gb|AC155651.4| Mus musculus 6 BAC RP24-111E13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 175599

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 359   gcatggctctgtcttgttcgca 380
             ||||||||||||||||||||||
Sbjct: 50266 gcatggctctgtcttgttcgca 50287



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>gb|AC158664.5| Mus musculus 6 BAC RP23-24F17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232894

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 359    gcatggctctgtcttgttcgca 380
              ||||||||||||||||||||||
Sbjct: 216757 gcatggctctgtcttgttcgca 216736



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>gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165440

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     agtaacaaaccacagcccaaa 49
              |||||||||||||||||||||
Sbjct: 136779 agtaacaaaccacagcccaaa 136759



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>emb|AL513443.1|NC93G11 Neurospora crassa DNA linkage group V Cosmid contig 93G11
          Length = 86075

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 434   gcactgatatgaatgatggttcggt 458
             ||||||||||||||| |||||||||
Sbjct: 15721 gcactgatatgaatgttggttcggt 15697



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>dbj|BS000223.1| Pan troglodytes chromosome 22 clone:RP43-010G23, map 22, complete
             sequences
          Length = 112577

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 660   tctgcctatataaattaagca 680
             |||||||||||||||||||||
Sbjct: 30914 tctgcctatataaattaagca 30934



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>emb|AL163246.2|HS21C046 Homo sapiens chromosome 21 segment HS21C046
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 660   tctgcctatataaattaagca 680
             |||||||||||||||||||||
Sbjct: 72986 tctgcctatataaattaagca 73006



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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 302   gcgcccgcagaccccgcctcc 322
             |||||||||||||||||||||
Sbjct: 89455 gcgcccgcagaccccgcctcc 89435



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>dbj|AP005242.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-805F19, complete
             sequence
          Length = 196360

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 660   tctgcctatataaattaagca 680
             |||||||||||||||||||||
Sbjct: 51301 tctgcctatataaattaagca 51281



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>emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 660   tctgcctatataaattaagca 680
             |||||||||||||||||||||
Sbjct: 22978 tctgcctatataaattaagca 22998



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>emb|AJ006995.1| Homo sapiens chromosome 21 PAC LLNLP704F18108Q13, complete sequence
          Length = 152383

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 660   tctgcctatataaattaagca 680
             |||||||||||||||||||||
Sbjct: 70026 tctgcctatataaattaagca 70046



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>emb|AL049911.2| Homo sapiens chromosome 21 PAC RPCIP704C216Q2, complete sequence
          Length = 111648

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 660   tctgcctatataaattaagca 680
             |||||||||||||||||||||
Sbjct: 80505 tctgcctatataaattaagca 80485


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 104,135,048
Number of extensions: 5112141
Number of successful extensions: 112293
Number of sequences better than 10.0: 12
Number of HSP's gapped: 112293
Number of HSP's successfully gapped: 12
Length of query: 708
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 686
Effective length of database: 18,508,616,841
Effective search space: 12696911152926
Effective search space used: 12696911152926
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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