ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf127m01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049187.1| Oryza sativa (japonica cultivar-group) Os01g0262500 (Os01g0262500) mRNA, partial cds Length = 865 Score = 474 bits (239), Expect = e-130 Identities = 491/575 (85%) Strand = Plus / Plus Query: 173 aagcgctcctacgagttctgcaaccgcgccgtctccaccatgcacgccgtcgctgccgtc 232 |||||||||||||| ||||||||||||||||||||| || ||||||| ||| |||||| Sbjct: 61 aagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccgtc 120 Query: 233 tgcatggcctgcctctccgtggaggactggtcctgccccgtctgccccctcaacgccccc 292 | | | |||||||||||||| | ||||||||| ||||| ||| ||||||| |||| || Sbjct: 121 tccctcgcctgcctctccgtcgccgactggtcccgccccctctcccccctcgccgccgcc 180 Query: 293 tcctcgccgcgccagatgaagtccctggcggtgacgctgtcgtacatgatctacgacgcc 352 ||||| || | |||||||||| | |||||||||||||||||||||||| | |||||||| Sbjct: 181 tcctcccctccccagatgaaggcgctggcggtgacgctgtcgtacatggtgtacgacgcg 240 Query: 353 gtgtgcagccatctcaacggtgacgtccggctcgacaacaccgtgcaccacctggtcagc 412 | |||| || | ||||||| |||||| || | |||||||||||||||||||| |||||| Sbjct: 241 gcgtgctgctacctcaacgacgacgtcagggtggacaacaccgtgcaccacctcgtcagc 300 Query: 413 atcgtcggcatcggcgccggcctcgcctaccagaggtgcggcacggagatgatggcgtgc 472 ||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||| || Sbjct: 301 atcgtcggcatcgccgccggcctcgcctaccggaggtgcgggacggagatggtggccagc 360 Query: 473 atgttcatcacggagatctccagcccgctgctgcacctcagggagatgctcaaggagctc 532 ||||| |||||||||||||||||||||||||||| ||| | ||||| ||||||||| || Sbjct: 361 ctgttcgtcacggagatctccagcccgctgctgcatctccgcgagattctcaaggagttc 420 Query: 533 ggcatcaaggacacggacctcaacctcctcgtcgacattctatttgcggcgaccttttcg 592 |||||||||||||| |||||||||||||||||||| ||| |||| || | || || ||| Sbjct: 421 ggcatcaaggacaccgacctcaacctcctcgtcgatattttattcgccgtgatattctcg 480 Query: 593 gtgggacggatggttggtggaccgtacctcacctacgtcaccttgacaacagactacccc 652 |||| ||| |||| | ||| || |||||||| ||||||||| | || ||||| ||||| Sbjct: 481 gtggcacgaatgggttttgggccatacctcacgtacgtcaccgttacggcagacaacccc 540 Query: 653 atcctcatcaaggcgatggctgcgggtttgcaactggtaagcgcctactggttcttgagg 712 |||||||| ||||||||||| | || ||||| ||||| || |||||||||||| ||||| Sbjct: 541 atcctcattaaggcgatggcgacaggcttgcagctggtgagtgcctactggttcctgagg 600 Query: 713 atcctcaggatggtcaggtacaagctcgggaagaa 747 ||||| |||||||||||| ||||||| |||||||| Sbjct: 601 atcctaaggatggtcaggcacaagctggggaagaa 635
>dbj|AK071545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099M14, full insert sequence Length = 865 Score = 474 bits (239), Expect = e-130 Identities = 491/575 (85%) Strand = Plus / Plus Query: 173 aagcgctcctacgagttctgcaaccgcgccgtctccaccatgcacgccgtcgctgccgtc 232 |||||||||||||| ||||||||||||||||||||| || ||||||| ||| |||||| Sbjct: 61 aagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccgtc 120 Query: 233 tgcatggcctgcctctccgtggaggactggtcctgccccgtctgccccctcaacgccccc 292 | | | |||||||||||||| | ||||||||| ||||| ||| ||||||| |||| || Sbjct: 121 tccctcgcctgcctctccgtcgccgactggtcccgccccctctcccccctcgccgccgcc 180 Query: 293 tcctcgccgcgccagatgaagtccctggcggtgacgctgtcgtacatgatctacgacgcc 352 ||||| || | |||||||||| | |||||||||||||||||||||||| | |||||||| Sbjct: 181 tcctcccctccccagatgaaggcgctggcggtgacgctgtcgtacatggtgtacgacgcg 240 Query: 353 gtgtgcagccatctcaacggtgacgtccggctcgacaacaccgtgcaccacctggtcagc 412 | |||| || | ||||||| |||||| || | |||||||||||||||||||| |||||| Sbjct: 241 gcgtgctgctacctcaacgacgacgtcagggtggacaacaccgtgcaccacctcgtcagc 300 Query: 413 atcgtcggcatcggcgccggcctcgcctaccagaggtgcggcacggagatgatggcgtgc 472 ||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||| || Sbjct: 301 atcgtcggcatcgccgccggcctcgcctaccggaggtgcgggacggagatggtggccagc 360 Query: 473 atgttcatcacggagatctccagcccgctgctgcacctcagggagatgctcaaggagctc 532 ||||| |||||||||||||||||||||||||||| ||| | ||||| ||||||||| || Sbjct: 361 ctgttcgtcacggagatctccagcccgctgctgcatctccgcgagattctcaaggagttc 420 Query: 533 ggcatcaaggacacggacctcaacctcctcgtcgacattctatttgcggcgaccttttcg 592 |||||||||||||| |||||||||||||||||||| ||| |||| || | || || ||| Sbjct: 421 ggcatcaaggacaccgacctcaacctcctcgtcgatattttattcgccgtgatattctcg 480 Query: 593 gtgggacggatggttggtggaccgtacctcacctacgtcaccttgacaacagactacccc 652 |||| ||| |||| | ||| || |||||||| ||||||||| | || ||||| ||||| Sbjct: 481 gtggcacgaatgggttttgggccatacctcacgtacgtcaccgttacggcagacaacccc 540 Query: 653 atcctcatcaaggcgatggctgcgggtttgcaactggtaagcgcctactggttcttgagg 712 |||||||| ||||||||||| | || ||||| ||||| || |||||||||||| ||||| Sbjct: 541 atcctcattaaggcgatggcgacaggcttgcagctggtgagtgcctactggttcctgagg 600 Query: 713 atcctcaggatggtcaggtacaagctcgggaagaa 747 ||||| |||||||||||| ||||||| |||||||| Sbjct: 601 atcctaaggatggtcaggcacaagctggggaagaa 635
>gb|AY111865.1| Zea mays CL16874_1 mRNA sequence Length = 736 Score = 194 bits (98), Expect = 4e-46 Identities = 219/258 (84%), Gaps = 1/258 (0%) Strand = Plus / Plus Query: 482 acggagatctccagcccgctgctgcacctcagggagatgctcaaggagctcggcat-caa 540 |||||||| |||||||||||||||||||| ||||||||||||||||||| ||| | | Sbjct: 182 acggagatgtccagcccgctgctgcacctgcgggagatgctcaaggagctgggcgtgcgg 241 Query: 541 ggacacggacctcaacctcctcgtcgacattctatttgcggcgaccttttcggtgggacg 600 |||||||||||||||||||||||||||| | || || || || ||||| || | | || Sbjct: 242 ggacacggacctcaacctcctcgtcgacgtgctcttcgccgccaccttctccgccgcccg 301 Query: 601 gatggttggtggaccgtacctcacctacgtcaccttgacaacagactaccccatcctcat 660 ||||| | || ||||||||||||||||||||| |||| | ||| |||| |||||||| Sbjct: 302 gatgggcgtcgggccgtacctcacctacgtcaccgtgacggccgacaacccaatcctcat 361 Query: 661 caaggcgatggctgcgggtttgcaactggtaagcgcctactggttcttgaggatcctcag 720 |||||||||||| |||| |||| ||||| ||||||||||||||| || |||||||||| Sbjct: 362 caaggcgatggcgacggggctgcagctggtgagcgcctactggttcctgcggatcctcag 421 Query: 721 gatggtcaggtacaagct 738 |||||||||||||||||| Sbjct: 422 gatggtcaggtacaagct 439
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 151 bits (76), Expect = 6e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 305 cagatgaagtccctggcggtgacgctgtcgtacatgatctacgacgccgtgtgcagccat 364 ||||||||| | |||||||||||||||||||||||| | |||||||| | |||| || | Sbjct: 8882790 cagatgaaggcgctggcggtgacgctgtcgtacatggtgtacgacgcggcgtgctgctac 8882849 Query: 365 ctcaacggtgacgtccggctcgacaacaccgtgcaccacctggtcagcatcgtcggcatc 424 ||||||| |||||| || | |||||||||||||||||||| |||||||||||||||||| Sbjct: 8882850 ctcaacgacgacgtcagggtggacaacaccgtgcaccacctcgtcagcatcgtcggcatc 8882909 Query: 425 ggcgccggcctcgcctaccagagg 448 | ||||||||||||||||| |||| Sbjct: 8882910 gccgccggcctcgcctaccggagg 8882933 Score = 143 bits (72), Expect = 1e-30 Identities = 108/120 (90%) Strand = Plus / Plus Query: 448 gtgcggcacggagatgatggcgtgcatgttcatcacggagatctccagcccgctgctgca 507 |||||| ||||||||| |||| || ||||| |||||||||||||||||||||||||||| Sbjct: 8883023 gtgcgggacggagatggtggccagcctgttcgtcacggagatctccagcccgctgctgca 8883082 Query: 508 cctcagggagatgctcaaggagctcggcatcaaggacacggacctcaacctcctcgtcga 567 ||| | ||||| ||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 8883083 tctccgcgagattctcaaggagttcggcatcaaggacaccgacctcaacctcctcgtcga 8883142 Score = 97.6 bits (49), Expect = 8e-17 Identities = 106/125 (84%) Strand = Plus / Plus Query: 173 aagcgctcctacgagttctgcaaccgcgccgtctccaccatgcacgccgtcgctgccgtc 232 |||||||||||||| ||||||||||||||||||||| || ||||||| ||| |||||| Sbjct: 8882553 aagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccgtc 8882612 Query: 233 tgcatggcctgcctctccgtggaggactggtcctgccccgtctgccccctcaacgccccc 292 | | | |||||||||||||| | ||||||||| ||||| ||| ||||||| |||| || Sbjct: 8882613 tccctcgcctgcctctccgtcgccgactggtcccgccccctctcccccctcgccgccgcc 8882672 Query: 293 tcctc 297 ||||| Sbjct: 8882673 tcctc 8882677 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 661 caaggcgatggctgcgggtttgcaactggtaagcgcctactggttcttgaggatcctcag 720 |||||||||||| | || ||||| ||||| || |||||||||||| |||||||||| || Sbjct: 8884072 caaggcgatggcgacaggcttgcagctggtgagtgcctactggttcctgaggatcctaag 8884131 Query: 721 gatggtcaggtacaagctcgggaagaa 747 |||||||||| ||||||| |||||||| Sbjct: 8884132 gatggtcaggcacaagctggggaagaa 8884158 Score = 42.1 bits (21), Expect = 3.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 617 tacctcacctacgtcaccttgacaacagactaccccatcctcatcaagg 665 |||||||| ||||||||| | || ||||| ||||||||||||| |||| Sbjct: 8883837 tacctcacgtacgtcaccgttacggcagacaaccccatcctcattaagg 8883885
>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0469E09 Length = 146081 Score = 151 bits (76), Expect = 6e-33 Identities = 127/144 (88%) Strand = Plus / Plus Query: 305 cagatgaagtccctggcggtgacgctgtcgtacatgatctacgacgccgtgtgcagccat 364 ||||||||| | |||||||||||||||||||||||| | |||||||| | |||| || | Sbjct: 118818 cagatgaaggcgctggcggtgacgctgtcgtacatggtgtacgacgcggcgtgctgctac 118877 Query: 365 ctcaacggtgacgtccggctcgacaacaccgtgcaccacctggtcagcatcgtcggcatc 424 ||||||| |||||| || | |||||||||||||||||||| |||||||||||||||||| Sbjct: 118878 ctcaacgacgacgtcagggtggacaacaccgtgcaccacctcgtcagcatcgtcggcatc 118937 Query: 425 ggcgccggcctcgcctaccagagg 448 | ||||||||||||||||| |||| Sbjct: 118938 gccgccggcctcgcctaccggagg 118961 Score = 143 bits (72), Expect = 1e-30 Identities = 108/120 (90%) Strand = Plus / Plus Query: 448 gtgcggcacggagatgatggcgtgcatgttcatcacggagatctccagcccgctgctgca 507 |||||| ||||||||| |||| || ||||| |||||||||||||||||||||||||||| Sbjct: 119051 gtgcgggacggagatggtggccagcctgttcgtcacggagatctccagcccgctgctgca 119110 Query: 508 cctcagggagatgctcaaggagctcggcatcaaggacacggacctcaacctcctcgtcga 567 ||| | ||||| ||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 119111 tctccgcgagattctcaaggagttcggcatcaaggacaccgacctcaacctcctcgtcga 119170 Score = 97.6 bits (49), Expect = 8e-17 Identities = 106/125 (84%) Strand = Plus / Plus Query: 173 aagcgctcctacgagttctgcaaccgcgccgtctccaccatgcacgccgtcgctgccgtc 232 |||||||||||||| ||||||||||||||||||||| || ||||||| ||| |||||| Sbjct: 118581 aagcgctcctacgacttctgcaaccgcgccgtctccgccgcccacgccgccgccgccgtc 118640 Query: 233 tgcatggcctgcctctccgtggaggactggtcctgccccgtctgccccctcaacgccccc 292 | | | |||||||||||||| | ||||||||| ||||| ||| ||||||| |||| || Sbjct: 118641 tccctcgcctgcctctccgtcgccgactggtcccgccccctctcccccctcgccgccgcc 118700 Query: 293 tcctc 297 ||||| Sbjct: 118701 tcctc 118705 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 661 caaggcgatggctgcgggtttgcaactggtaagcgcctactggttcttgaggatcctcag 720 |||||||||||| | || ||||| ||||| || |||||||||||| |||||||||| || Sbjct: 120100 caaggcgatggcgacaggcttgcagctggtgagtgcctactggttcctgaggatcctaag 120159 Query: 721 gatggtcaggtacaagctcgggaagaa 747 |||||||||| ||||||| |||||||| Sbjct: 120160 gatggtcaggcacaagctggggaagaa 120186 Score = 42.1 bits (21), Expect = 3.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 617 tacctcacctacgtcaccttgacaacagactaccccatcctcatcaagg 665 |||||||| ||||||||| | || ||||| ||||||||||||| |||| Sbjct: 119865 tacctcacgtacgtcaccgttacggcagacaaccccatcctcattaagg 119913
>emb|AM055942.3| Toxoplasma gondii RH, genomic DNA chromosome Ia Length = 1986653 Score = 48.1 bits (24), Expect = 0.064 Identities = 24/24 (100%) Strand = Plus / Minus Query: 699 actggttcttgaggatcctcagga 722 |||||||||||||||||||||||| Sbjct: 1201648 actggttcttgaggatcctcagga 1201625
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 417 tcggcatcggcgccggcctcgcc 439 ||||||||||||||||||||||| Sbjct: 4752500 tcggcatcggcgccggcctcgcc 4752478
>ref|XM_001220610.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01390) mRNA, complete cds Length = 1200 Score = 44.1 bits (22), Expect = 1.00 Identities = 22/22 (100%) Strand = Plus / Plus Query: 520 gctcaaggagctcggcatcaag 541 |||||||||||||||||||||| Sbjct: 807 gctcaaggagctcggcatcaag 828
>gb|AF447157.1|F447157S01 Homo sapiens protein tyrosine kinase-7 (PTK7) gene, exon 1 Length = 1099 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 gccccctcaacgccccctcctcgccg 301 |||||||| ||||||||||||||||| Sbjct: 677 gccccctcgacgccccctcctcgccg 652
>emb|AL355385.15| Human DNA sequence from clone RP11-387M24 on chromosome 6 Contains the 5' end of a gene for a novel protein (KIAA0076 KIAA0708), the gene for a novel protein (CGI-22), a novel gene, the PTK7 gene for protein tyrosine kinase 7, the 5' end of the SRF gene for serum response factor (c-fos serum response element-binding transcription factor) and CpG islands, complete sequence Length = 129884 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 gccccctcaacgccccctcctcgccg 301 |||||||| ||||||||||||||||| Sbjct: 28298 gccccctcgacgccccctcctcgccg 28273
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Plus Query: 404 ctggtcagcatcgtcggcatcggcgc 429 |||||| ||||||||||||||||||| Sbjct: 1815179 ctggtcggcatcgtcggcatcggcgc 1815204 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gtgacgctgtcgtacatgatc 343 ||||||||||||||||||||| Sbjct: 3452298 gtgacgctgtcgtacatgatc 3452278
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 1.00 Identities = 25/26 (96%) Strand = Plus / Minus Query: 371 ggtgacgtccggctcgacaacaccgt 396 |||||||||||||||| ||||||||| Sbjct: 6937497 ggtgacgtccggctcggcaacaccgt 6937472
>emb|AM236082.1| Rhizobium leguminosarum bv. viciae plasmid pRL8 complete genome, strain 3841 Length = 147463 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 649 ccccatcctcatcaaggcgat 669 ||||||||||||||||||||| Sbjct: 1546 ccccatcctcatcaaggcgat 1526
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 ccctggcggtgacgctgtcgt 335 ||||||||||||||||||||| Sbjct: 481591 ccctggcggtgacgctgtcgt 481611
>gb|AC142304.1| Pan troglodytes BAC clone RP43-130F21 from 7, complete sequence Length = 142472 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ctgcctctccgtggaggactg 261 ||||||||||||||||||||| Sbjct: 38338 ctgcctctccgtggaggactg 38318
>emb|AL117260.1|LMFL1648 Leishmania major Friedlin cosmid L1648, complete sequence Length = 34670 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 atcgtcggcatcggcgccggc 433 ||||||||||||||||||||| Sbjct: 14651 atcgtcggcatcggcgccggc 14631
>gb|AC147272.3| Pan troglodytes BAC clone RP43-116B9 from chromosome 7, complete sequence Length = 186339 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ctgcctctccgtggaggactg 261 ||||||||||||||||||||| Sbjct: 113473 ctgcctctccgtggaggactg 113453
>emb|X89447.1|RLREPABCG R.leguminosarum DNA for repA, repB and repC genes Length = 5024 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 649 ccccatcctcatcaaggcgat 669 ||||||||||||||||||||| Sbjct: 1992 ccccatcctcatcaaggcgat 1972
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 486 agatctccagcccgctgctgcacct 510 |||||||||||||||||||| |||| Sbjct: 161460 agatctccagcccgctgctggacct 161484 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 149,277,909 Number of extensions: 8135196 Number of successful extensions: 162217 Number of sequences better than 10.0: 19 Number of HSP's gapped: 162214 Number of HSP's successfully gapped: 29 Length of query: 1043 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1020 Effective length of database: 18,503,978,556 Effective search space: 18874058127120 Effective search space used: 18874058127120 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
