ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf113n01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF155129.1|AF155129 Hordeum vulgare dehydrin 12 (Dhn12) gene, complete cds Length = 2890 Score = 244 bits (123), Expect = 1e-60 Identities = 241/276 (87%), Gaps = 7/276 (2%) Strand = Plus / Minus Query: 1181 caaaattgacaaaaatgatccctgg--gaaagaactcacagagtgacccttcaaagaaaa 1238 |||||||||||||||||| |||||| |||||||||||| ||| |||| |||| |||||| Sbjct: 1038 caaaattgacaaaaatgacccctggcggaaagaactcacggag-gacctttcagagaaaa 980 Query: 1239 tatttcacccgactaacccttttgtgtgacgtccgacacctaggcgccacactacactgt 1298 ||| ||||||| |||||||||||||||| || | ||||||| |||||||||||||||| Sbjct: 979 tatgtcacccggctaacccttttgtgtggcgcctgacacct---cgccacactacactgt 923 Query: 1299 gtaacgcctagctgttcgacgccacaccccccgaccacctggcagagagggcccatccct 1358 || ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 922 gtgacgcctagccgttcggcgccacacccct-gaccatctggcagagagggcccaccccc 864 Query: 1359 caggccatgtgacgcctaagcctcaggcgtcacgcattgtaatatgtggcgtcaaacgct 1418 || ||| |||||||||||||||||||||||||| ||||||||| |||| || | | ||| Sbjct: 863 caagccgtgtgacgcctaagcctcaggcgtcacacattgtaatgtgtgacgccgagagct 804 Query: 1419 taggcgccacacattgacttaacaagcacgggccag 1454 || |||||||||| |||||||||| ||||||||||| Sbjct: 803 tatgcgccacacaatgacttaacaggcacgggccag 768
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 242 bits (122), Expect = 6e-60 Identities = 149/158 (94%) Strand = Plus / Minus Query: 2485 tcctggattgtcgtaacctttacgacgattctaaatcgtcgttggcaatcgaactcagtc 2544 ||||||||||||||||||||||||||||| ||||||| ||| || ||||| ||||||||| Sbjct: 268532 tcctggattgtcgtaacctttacgacgatcctaaatcatcgctgacaatcaaactcagtc 268473 Query: 2545 ctaagtggcagtcctacgtggcaaagttacgacgaaatcaaaacgtcatggctgaaatca 2604 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 268472 ctacgtggcagtcctacgtggcaagattacgacgaaatcaaaacgtcatggctgaaatca 268413 Query: 2605 gcccaacccatttcaattgatcacatgggctggtttta 2642 ||||||||||||||||||||||||||||||| |||||| Sbjct: 268412 gcccaacccatttcaattgatcacatgggctcgtttta 268375 Score = 234 bits (118), Expect = 1e-57 Identities = 148/158 (93%) Strand = Plus / Minus Query: 2485 tcctggattgtcgtaacctttacgacgattctaaatcgtcgttggcaatcgaactcagtc 2544 |||||||||||||||||||||| |||||| ||||||| ||| || ||||| ||||||||| Sbjct: 382762 tcctggattgtcgtaacctttatgacgatcctaaatcatcgctgacaatcaaactcagtc 382703 Query: 2545 ctaagtggcagtcctacgtggcaaagttacgacgaaatcaaaacgtcatggctgaaatca 2604 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 382702 ctacgtggcagtcctacgtggcaaaattacgacgaaatcaaaacgtcatggctgaaatca 382643 Query: 2605 gcccaacccatttcaattgatcacatgggctggtttta 2642 |||||||||||||||||| |||||||||||| |||||| Sbjct: 382642 gcccaacccatttcaattcatcacatgggctcgtttta 382605 Score = 226 bits (114), Expect = 3e-55 Identities = 147/158 (93%) Strand = Plus / Plus Query: 2485 tcctggattgtcgtaacctttacgacgattctaaatcgtcgttggcaatcgaactcagtc 2544 |||||||||||| |||||||||||||||| ||| ||||||||||| |||| ||| ||||| Sbjct: 339602 tcctggattgtcttaacctttacgacgatcctacatcgtcgttggtaatcaaacccagtc 339661 Query: 2545 ctaagtggcagtcctacgtggcaaagttacgacgaaatcaaaacgtcatggctgaaatca 2604 ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct: 339662 ctacgtggcagtcctatgtggcaaaattacgacgaaatcaaaacgtcatggctgaaatca 339721 Query: 2605 gcccaacccatttcaattgatcacatgggctggtttta 2642 ||||||||||||||||||| |||||||||||| ||||| Sbjct: 339722 gcccaacccatttcaattggtcacatgggctgatttta 339759 Score = 220 bits (111), Expect = 2e-53 Identities = 144/155 (92%) Strand = Plus / Plus Query: 2488 tggattgtcgtaacctttacgacgattctaaatcgtcgttggcaatcgaactcagtccta 2547 |||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||| Sbjct: 229752 tggattgtcgtaacctttacgacgatcctacatcgtcgttggcaatcaaacctagtccta 229811 Query: 2548 agtggcagtcctacgtggcaaagttacgacgaaatcaaaacgtcatggctgaaatcagcc 2607 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 229812 cgtggcagtcctatgtggcaaaattacgacgaaatcaaaacgtcatggctgaaatcagcc 229871 Query: 2608 caacccatttcaattgatcacatgggctggtttta 2642 || ||||||||||||| |||||||||||| ||||| Sbjct: 229872 cagcccatttcaattggtcacatgggctgatttta 229906 Score = 182 bits (92), Expect = 5e-42 Identities = 128/140 (91%) Strand = Plus / Minus Query: 2347 cactacaaggaatatgctaatacacgacgctattttttcgtcgctacatcgctacggttt 2406 ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| Sbjct: 44536 cactacaaggaatatgctaatacacgacggtatattttcgtcgctacatcgtcacggttt 44477 Query: 2407 ttaatttacgacgatctcatgacgaaaaaccaaacgtcgaaaacggagcgtcacaaatga 2466 ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| Sbjct: 44476 ttagtttacgacgatctcacgacgaaaaaccaagcgtcgaaaacggagcgtcagaaatga 44417 Query: 2467 gtagcagcgacgttttgatc 2486 | || ||||||||||||| Sbjct: 44416 acaacaccgacgttttgatc 44397 Score = 168 bits (85), Expect = 7e-38 Identities = 124/137 (90%) Strand = Plus / Minus Query: 2347 cactacaaggaatatgctaatacacgacgctattttttcgtcgctacatcgctacggttt 2406 ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 268697 cactacaaggaatatgctagtacacgacgctattttttcgtcgctacatcgtcacggttt 268638 Query: 2407 ttaatttacgacgatctcatgacgaaaaaccaaacgtcgaaaacggagcgtcacaaatga 2466 || ||||||||||||| || ||||||||||||| ||||| ||||||||| ||| |||||| Sbjct: 268637 ttcatttacgacgatcgcacgacgaaaaaccaagcgtcggaaacggagcatcagaaatga 268578 Query: 2467 gtagcagcgacgttttg 2483 |||| |||||||||| Sbjct: 268577 acagcaacgacgttttg 268561 Score = 168 bits (85), Expect = 7e-38 Identities = 124/137 (90%) Strand = Plus / Minus Query: 2347 cactacaaggaatatgctaatacacgacgctattttttcgtcgctacatcgctacggttt 2406 ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| Sbjct: 382927 cactacaaggaatatgctagtacacgacgctattttttcgttgctacatcgtcacggttt 382868 Query: 2407 ttaatttacgacgatctcatgacgaaaaaccaaacgtcgaaaacggagcgtcacaaatga 2466 || ||||||||||||| || ||||||||||||| ||||| ||||||||||||| |||||| Sbjct: 382867 ttcatttacgacgatcgcacgacgaaaaaccaagcgtcggaaacggagcgtcagaaatga 382808 Query: 2467 gtagcagcgacgttttg 2483 |||| |||||||||| Sbjct: 382807 acagcaacgacgttttg 382791 Score = 155 bits (78), Expect = 1e-33 Identities = 87/90 (96%) Strand = Plus / Minus Query: 2553 cagtcctacgtggcaaagttacgacgaaatcaaaacgtcatggctgaaatcagcccaacc 2612 |||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| Sbjct: 44315 cagtcctacgtggcaaagttacgacgaaatcaaaacatcatagttgaaatcagcccaacc 44256 Query: 2613 catttcaattgatcacatgggctggtttta 2642 |||||||||||||||||||||||||||||| Sbjct: 44255 catttcaattgatcacatgggctggtttta 44226 Score = 93.7 bits (47), Expect = 3e-15 Identities = 50/51 (98%) Strand = Plus / Minus Query: 2755 aacttggtttcatttctatttgttgggccttttcaacccaattatttgtcc 2805 |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 44037 aacttggtttcatttctatttgttgggcctttgcaacccaattatttgtcc 43987 Score = 83.8 bits (42), Expect = 3e-12 Identities = 51/53 (96%), Gaps = 2/53 (3%) Strand = Plus / Minus Query: 2755 aacttggtttcatttctatttgttgggccttttcaa--cccaattatttgtcc 2805 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 268192 aacttggtttcatttctatttgttgggccttttcaacccccaattatttgtcc 268140 Score = 83.8 bits (42), Expect = 3e-12 Identities = 51/53 (96%), Gaps = 2/53 (3%) Strand = Plus / Minus Query: 2755 aacttggtttcatttctatttgttgggccttttcaa--cccaattatttgtcc 2805 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 382423 aacttggtttcatttctatttgttgggccttttcaacccccaattatttgtcc 382371 Score = 75.8 bits (38), Expect = 8e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 2485 tcctggattgtcgtaacctttacgacgattctaaatcgtcgttggcaatcgaactcagtc 2544 |||||||| |||||||||||||||||||| ||||||| |||||| |||| ||| ||||| Sbjct: 44370 tcctggatcgtcgtaacctttacgacgatcctaaatcatcgttgacaatataacccagtc 44311 Query: 2545 ctaagtggca 2554 ||| |||||| Sbjct: 44310 ctacgtggca 44301
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 99.6 bits (50), Expect = 5e-17 Identities = 127/152 (83%), Gaps = 3/152 (1%) Strand = Plus / Minus Query: 224 ggcggccctcgcagccgcgctggtttacaactacccgattgccggccgcctccgggagat 283 |||||||||||| | || ||||| ||| |||||||||| |||||||||||||| ||| | Sbjct: 16018658 ggcggccctcgcggaggctctggtgtactactacccgatcgccggccgcctccgcgagct 16018599 Query: 284 cccc---ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 ||| ||||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 16018598 gcccaagggcggcaggctcgccgtggagtgcaccggcgaaggggtggtgttcgtggaggc 16018539 Query: 341 tgacgccgacgtgtcgctcgaggagctcggcg 372 || || |||||| | ||||||| ||||||| Sbjct: 16018538 ggaggcggacgtgcggatcgaggacctcggcg 16018507 Score = 67.9 bits (34), Expect = 2e-07 Identities = 99/120 (82%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 224 ggcggccctcgcagccgcgctggtttacaactacccgattgccggccgcctccgggagat 283 |||||||||||| | || ||||| ||| |||||||||| ||||||||||| |||||| | Sbjct: 16100060 ggcggccctcgcggaggccctggtgtactactacccgatcgccggccgcctgcgggagct 16100001 Query: 284 cccc---ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 || ||| |||||||| || || ||||||||||||||||||||||| |||||||| Sbjct: 16100000 gcctaagggccacaagctcgctgtggagtgcaccggcgaaggggtggtgtttgtggaggc 16099941 Score = 63.9 bits (32), Expect = 3e-06 Identities = 97/118 (82%), Gaps = 3/118 (2%) Strand = Plus / Minus Query: 226 cggccctcgcagccgcgctggtttacaactacccgattgccggccgcctccgggagatcc 285 ||||||| |||| || ||||| ||| |||||||||| ||||||||| | |||||||| | Sbjct: 16097957 cggccctagcagaggccctggtgtactactacccgatcgccggccgcttgcgggagatgc 16097898 Query: 286 cc---ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 || ||| || ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 16097897 ccaagggccacaggctcgccgtggagtgcaccgccgaaggggtggtgttcgtggaggc 16097840 Score = 63.9 bits (32), Expect = 3e-06 Identities = 32/32 (100%) Strand = Plus / Minus Query: 309 tgcaccggcgaaggggtggtgttcgtggaggc 340 |||||||||||||||||||||||||||||||| Sbjct: 16127124 tgcaccggcgaaggggtggtgttcgtggaggc 16127093
>emb|AL772415.6|CNS08C9T Oryza sativa chromosome 12, . BAC OSJNBa0060H23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153350 Score = 99.6 bits (50), Expect = 5e-17 Identities = 127/152 (83%), Gaps = 3/152 (1%) Strand = Plus / Minus Query: 224 ggcggccctcgcagccgcgctggtttacaactacccgattgccggccgcctccgggagat 283 |||||||||||| | || ||||| ||| |||||||||| |||||||||||||| ||| | Sbjct: 86071 ggcggccctcgcggaggctctggtgtactactacccgatcgccggccgcctccgcgagct 86012 Query: 284 cccc---ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 ||| ||||||| ||||| || || |||||||||||||||||||||||||||||||| Sbjct: 86011 gcccaagggcggcaggctcgccgtggagtgcaccggcgaaggggtggtgttcgtggaggc 85952 Query: 341 tgacgccgacgtgtcgctcgaggagctcggcg 372 || || |||||| | ||||||| ||||||| Sbjct: 85951 ggaggcggacgtgcggatcgaggacctcggcg 85920
>emb|CR855191.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0157A06, complete sequence Length = 80209 Score = 91.7 bits (46), Expect = 1e-14 Identities = 100/118 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||||||||| ||||| | |||||||| | |||||||| ||||||| ||| ||||||| Sbjct: 43779 actacccgatcgccgggaggatccgggagcttcccggcgggaagctcggggtggactgca 43720 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 ||||||| ||||| |||||||||||| ||||||||||| ||||| |||||| |||| Sbjct: 43719 ccggcgagggggtctcgttcgtggaggccgacgccgacgtctcgctggaggagttcgg 43662
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 91.7 bits (46), Expect = 1e-14 Identities = 100/118 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||||||||| ||||| | |||||||| | |||||||| ||||||||||| ||||||| Sbjct: 25321534 actacccgatcgccgggaggatccgggagcttcccggcgggaagctcgtggtggactgca 25321475 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 ||||||| ||||| |||||| ||||| ||||||||||| ||||| |||||| |||| Sbjct: 25321474 ccggcgagggggtctcgttcgtcgaggccgacgccgacgtctcgctggaggagttcgg 25321417
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 91.7 bits (46), Expect = 1e-14 Identities = 100/118 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||||||||| ||||| | |||||||| | |||||||| ||||||||||| ||||||| Sbjct: 105473 actacccgatcgccgggaggatccgggagcttcccggcgggaagctcgtggtggactgca 105414 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 ||||||| ||||| |||||| ||||| ||||||||||| ||||| |||||| |||| Sbjct: 105413 ccggcgagggggtctcgttcgtcgaggccgacgccgacgtctcgctggaggagttcgg 105356
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 91.7 bits (46), Expect = 1e-14 Identities = 100/118 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||||||||| ||||| | |||||||| | |||||||| ||||||||||| ||||||| Sbjct: 48093 actacccgatcgccgggaggatccgggagcttcccggcgggaagctcgtggtggactgca 48034 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 ||||||| ||||| |||||| ||||| ||||||||||| ||||| |||||| |||| Sbjct: 48033 ccggcgagggggtctcgttcgtcgaggccgacgccgacgtctcgctggaggagttcgg 47976
>emb|CT835716.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA036L24, full insert sequence Length = 516 Score = 87.7 bits (44), Expect = 2e-13 Identities = 101/120 (84%) Strand = Plus / Plus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||| ||| |||||||||| || ||||||||| |||| || ||||| ||||| ||||||| Sbjct: 270 actatccggttgccggccggctgcgggagatcgccggaggtaagctggtggtggactgca 329 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggcg 372 | | |||||||||| ||||| ||||| |||||||||||| ||| ||||||||||||| Sbjct: 330 cggcggaaggggtggcattcgtcgaggccgacgccgacgtgcggctagaggagctcggcg 389
>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0065H03, complete sequence Length = 141017 Score = 87.7 bits (44), Expect = 2e-13 Identities = 101/120 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||| ||| |||||||||| || ||||||||| |||| || ||||| ||||| ||||||| Sbjct: 21042 actatccggttgccggccggctgcgggagatcgccggaggtaagctggtggtggactgca 20983 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggcg 372 | | |||||||||| ||||| ||||| |||||||||||| ||| ||||||||||||| Sbjct: 20982 cggcggaaggggtggcattcgtcgaggccgacgccgacgtgcggctagaggagctcggcg 20923 Score = 69.9 bits (35), Expect = 5e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 264 gccggccgcctccgggagatccccggcggcaagctcgtggttgactgcaccggcgaaggg 323 ||||||||||| || ||| | ||| |||||||||| ||||| |||||||||| |||||| Sbjct: 39412 gccggccgcctgcgcgagcttccctgcggcaagctggtggtggactgcaccgaggaaggg 39471 Query: 324 gtggtgttcgt 334 ||||||||||| Sbjct: 39472 gtggtgttcgt 39482 Score = 69.9 bits (35), Expect = 5e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 264 gccggccgcctccgggagatccccggcggcaagctcgtggttgactgcaccggcgaaggg 323 ||||||||||| || ||| | ||| |||||||||| ||||| |||||||||| |||||| Sbjct: 51987 gccggccgcctgcgcgagcttccctgcggcaagctggtggtggactgcaccgaggaaggg 52046 Query: 324 gtggtgttcgt 334 ||||||||||| Sbjct: 52047 gtggtgttcgt 52057
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 87.7 bits (44), Expect = 2e-13 Identities = 101/120 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||| ||| |||||||||| || ||||||||| |||| || ||||| ||||| ||||||| Sbjct: 416868 actatccggttgccggccggctgcgggagatcgccggaggtaagctggtggtggactgca 416809 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggcg 372 | | |||||||||| ||||| ||||| |||||||||||| ||| ||||||||||||| Sbjct: 416808 cggcggaaggggtggcattcgtcgaggccgacgccgacgtgcggctagaggagctcggcg 416749 Score = 71.9 bits (36), Expect = 1e-08 Identities = 72/84 (85%) Strand = Plus / Plus Query: 288 ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| |||||| Sbjct: 2066786 ggcggtaagctggtggtggagtgcacggcggaaggggtggtgttcgtggaggccgacgcc 2066845 Query: 348 gacgtgtcgctcgaggagctcggc 371 |||||| ||| ||||||||||| Sbjct: 2066846 gacgtgcggctgcaggagctcggc 2066869 Score = 69.9 bits (35), Expect = 5e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 264 gccggccgcctccgggagatccccggcggcaagctcgtggttgactgcaccggcgaaggg 323 ||||||||||| || ||| | ||| |||||||||| ||||| |||||||||| |||||| Sbjct: 435238 gccggccgcctgcgcgagcttccctgcggcaagctggtggtggactgcaccgaggaaggg 435297 Query: 324 gtggtgttcgt 334 ||||||||||| Sbjct: 435298 gtggtgttcgt 435308 Score = 69.9 bits (35), Expect = 5e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 264 gccggccgcctccgggagatccccggcggcaagctcgtggttgactgcaccggcgaaggg 323 ||||||||||| || ||| | ||| |||||||||| ||||| |||||||||| |||||| Sbjct: 447813 gccggccgcctgcgcgagcttccctgcggcaagctggtggtggactgcaccgaggaaggg 447872 Query: 324 gtggtgttcgt 334 ||||||||||| Sbjct: 447873 gtggtgttcgt 447883 Score = 56.0 bits (28), Expect = 7e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||||||||| ||||||||||| |||||||||||| Sbjct: 2053593 gaaggggtggttttcgtggaggccgacgccgacgtg 2053628 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 ||||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||||||| Sbjct: 2066514 cggagctcgtggcaccggcgaggccaacgccgcacgagcacaagcccctctccgacatcg 2066573 Query: 130 ac 131 || Sbjct: 2066574 ac 2066575
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 87.7 bits (44), Expect = 2e-13 Identities = 101/120 (84%) Strand = Plus / Minus Query: 253 actacccgattgccggccgcctccgggagatccccggcggcaagctcgtggttgactgca 312 |||| ||| |||||||||| || ||||||||| |||| || ||||| ||||| ||||||| Sbjct: 416868 actatccggttgccggccggctgcgggagatcgccggaggtaagctggtggtggactgca 416809 Query: 313 ccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggcg 372 | | |||||||||| ||||| ||||| |||||||||||| ||| ||||||||||||| Sbjct: 416808 cggcggaaggggtggcattcgtcgaggccgacgccgacgtgcggctagaggagctcggcg 416749 Score = 75.8 bits (38), Expect = 8e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||| |||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 6292487 gtggtggactgcacggccgaaggggtggtgttcgtggaggccgacgccgacgtg 6292540 Score = 71.9 bits (36), Expect = 1e-08 Identities = 72/84 (85%) Strand = Plus / Plus Query: 288 ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| |||||| Sbjct: 2066786 ggcggtaagctggtggtggagtgcacggcggaaggggtggtgttcgtggaggccgacgcc 2066845 Query: 348 gacgtgtcgctcgaggagctcggc 371 |||||| ||| ||||||||||| Sbjct: 2066846 gacgtgcggctgcaggagctcggc 2066869 Score = 69.9 bits (35), Expect = 5e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 264 gccggccgcctccgggagatccccggcggcaagctcgtggttgactgcaccggcgaaggg 323 ||||||||||| || ||| | ||| |||||||||| ||||| |||||||||| |||||| Sbjct: 435238 gccggccgcctgcgcgagcttccctgcggcaagctggtggtggactgcaccgaggaaggg 435297 Query: 324 gtggtgttcgt 334 ||||||||||| Sbjct: 435298 gtggtgttcgt 435308 Score = 69.9 bits (35), Expect = 5e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 264 gccggccgcctccgggagatccccggcggcaagctcgtggttgactgcaccggcgaaggg 323 ||||||||||| || ||| | ||| |||||||||| ||||| |||||||||| |||||| Sbjct: 447813 gccggccgcctgcgcgagcttccctgcggcaagctggtggtggactgcaccgaggaaggg 447872 Query: 324 gtggtgttcgt 334 ||||||||||| Sbjct: 447873 gtggtgttcgt 447883 Score = 56.0 bits (28), Expect = 7e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||||||||| ||||||||||| |||||||||||| Sbjct: 2053593 gaaggggtggttttcgtggaggccgacgccgacgtg 2053628 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggag 365 |||||||||||||| || ||| ||||| | ||||| |||||||||||| ||||||| | Sbjct: 18697191 gactgcaccggcgagggcgtgctgttcatcgaggccgacgccgacgtgaggctcgagcac 18697250 Query: 366 ctcggcggcg 375 ||||||||| Sbjct: 18697251 ttcggcggcg 18697260 Score = 46.1 bits (23), Expect = 0.69 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgcc 100 |||||||||||| ||||||| |||||||||| Sbjct: 18696955 cggagctggtggcgccggcggggccgacgcc 18696985 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 ||||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||||||| Sbjct: 2066514 cggagctcgtggcaccggcgaggccaacgccgcacgagcacaagcccctctccgacatcg 2066573 Query: 130 ac 131 || Sbjct: 2066574 ac 2066575
>ref|NM_001070823.1| Oryza sativa (japonica cultivar-group) Os10g0195600 (Os10g0195600) mRNA, complete cds Length = 2208 Score = 75.8 bits (38), Expect = 8e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||| |||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 721 gtggtggactgcacggccgaaggggtggtgttcgtggaggccgacgccgacgtg 774
>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0003P07, complete sequence Length = 175116 Score = 75.8 bits (38), Expect = 8e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||| |||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 10340 gtggtggactgcacggccgaaggggtggtgttcgtggaggccgacgccgacgtg 10393
>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete sequence Length = 100285 Score = 75.8 bits (38), Expect = 8e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||| |||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 90045 gtggtggactgcacggccgaaggggtggtgttcgtggaggccgacgccgacgtg 90098
>dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A21, full insert sequence Length = 2209 Score = 75.8 bits (38), Expect = 8e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||| |||||||| | |||||||||||||||||||||||| |||||||||||| Sbjct: 722 gtggtggactgcacggccgaaggggtggtgttcgtggaggccgacgccgacgtg 775
>emb|CT834629.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN026I13, full insert sequence Length = 831 Score = 71.9 bits (36), Expect = 1e-08 Identities = 72/84 (85%) Strand = Plus / Plus Query: 288 ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| |||||| Sbjct: 352 ggcggtaagctggtggtggagtgcacggcggaaggggtggtgttcgtggaggccgacgcc 411 Query: 348 gacgtgtcgctcgaggagctcggc 371 |||||| ||| ||||||||||| Sbjct: 412 gacgtgcggctgcaggagctcggc 435
>ref|NM_001070646.1| Oryza sativa (japonica cultivar-group) Os10g0133500 (Os10g0133500) mRNA, complete cds Length = 1762 Score = 71.9 bits (36), Expect = 1e-08 Identities = 72/84 (85%) Strand = Plus / Plus Query: 288 ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| |||||| Sbjct: 351 ggcggtaagctggtggtggagtgcacggcggaaggggtggtgttcgtggaggccgacgcc 410 Query: 348 gacgtgtcgctcgaggagctcggc 371 |||||| ||| ||||||||||| Sbjct: 411 gacgtgcggctgcaggagctcggc 434 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 ||||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||||||| Sbjct: 79 cggagctcgtggcaccggcgaggccaacgccgcacgagcacaagcccctctccgacatcg 138 Query: 130 ac 131 || Sbjct: 139 ac 140
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 71.9 bits (36), Expect = 1e-08 Identities = 72/84 (85%) Strand = Plus / Plus Query: 288 ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| |||||| Sbjct: 44926 ggcggtaagctggtggtggagtgcacggcggaaggggtggtgttcgtggaggccgacgcc 44985 Query: 348 gacgtgtcgctcgaggagctcggc 371 |||||| ||| ||||||||||| Sbjct: 44986 gacgtgcggctgcaggagctcggc 45009 Score = 56.0 bits (28), Expect = 7e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||||||||| ||||||||||| |||||||||||| Sbjct: 31733 gaaggggtggttttcgtggaggccgacgccgacgtg 31768 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 ||||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||||||| Sbjct: 44654 cggagctcgtggcaccggcgaggccaacgccgcacgagcacaagcccctctccgacatcg 44713 Query: 130 ac 131 || Sbjct: 44714 ac 44715
>dbj|AK066866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088O08, full insert sequence Length = 1766 Score = 71.9 bits (36), Expect = 1e-08 Identities = 72/84 (85%) Strand = Plus / Plus Query: 288 ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||| |||||| Sbjct: 355 ggcggtaagctggtggtggagtgcacggcggaaggggtggtgttcgtggaggccgacgcc 414 Query: 348 gacgtgtcgctcgaggagctcggc 371 |||||| ||| ||||||||||| Sbjct: 415 gacgtgcggctgcaggagctcggc 438 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 ||||||| |||| |||||| |||| ||||| |||||| ||| ||||||||||||||| Sbjct: 83 cggagctcgtggcaccggcgaggccaacgccgcacgagcacaagcccctctccgacatcg 142 Query: 130 ac 131 || Sbjct: 143 ac 144
>gb|AY673001.1|AY673001S1 Triticum aestivum cultivar Chinese Spring putative non-LTR retroelement, complete sequence Length = 1318 Score = 67.9 bits (34), Expect = 2e-07 Identities = 46/50 (92%) Strand = Plus / Plus Query: 1258 ttttgtgtgacgtccgacacctaggcgccacactacactgtgtaacgcct 1307 |||||||||||||||||||| ||||||||||||||| |||| ||||||| Sbjct: 1100 ttttgtgtgacgtccgacacgaaggcgccacactacattgtgcaacgcct 1149
>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165955 Score = 67.9 bits (34), Expect = 2e-07 Identities = 99/120 (82%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 224 ggcggccctcgcagccgcgctggtttacaactacccgattgccggccgcctccgggagat 283 |||||||||||| | || ||||| ||| |||||||||| ||||||||||| |||||| | Sbjct: 143283 ggcggccctcgcggaggccctggtgtactactacccgatcgccggccgcctgcgggagct 143342 Query: 284 cccc---ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 || ||| |||||||| || || ||||||||||||||||||||||| |||||||| Sbjct: 143343 gcctaagggccacaagctcgctgtggagtgcaccggcgaaggggtggtgtttgtggaggc 143402 Score = 63.9 bits (32), Expect = 3e-06 Identities = 32/32 (100%) Strand = Plus / Plus Query: 309 tgcaccggcgaaggggtggtgttcgtggaggc 340 |||||||||||||||||||||||||||||||| Sbjct: 116219 tgcaccggcgaaggggtggtgttcgtggaggc 116250 Score = 63.9 bits (32), Expect = 3e-06 Identities = 97/118 (82%), Gaps = 3/118 (2%) Strand = Plus / Plus Query: 226 cggccctcgcagccgcgctggtttacaactacccgattgccggccgcctccgggagatcc 285 ||||||| |||| || ||||| ||| |||||||||| ||||||||| | |||||||| | Sbjct: 145386 cggccctagcagaggccctggtgtactactacccgatcgccggccgcttgcgggagatgc 145445 Query: 286 cc---ggcggcaagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 || ||| || ||||| || || ||||||| |||||||||||||||||||||||| Sbjct: 145446 ccaagggccacaggctcgccgtggagtgcaccgccgaaggggtggtgttcgtggaggc 145503
>ref|NM_001066475.1| Oryza sativa (japonica cultivar-group) Os07g0550600 (Os07g0550600) mRNA, complete cds Length = 1622 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 348 aagctggtggtggattgcaccggcgacggcgtggtgttcgtcgaggcggacgccgacgt 406
>ref|NM_001065812.1| Oryza sativa (japonica cultivar-group) Os07g0244200 (Os07g0244200) mRNA, complete cds Length = 1739 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 |||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||||||| Sbjct: 323 aagctcgtcgtcgactgcaccggcgagggcgtgatgttcgtcgaggcggacgccgacgt 381
>ref|NM_001049516.1| Oryza sativa (japonica cultivar-group) Os01g0350000 (Os01g0350000) mRNA, complete cds Length = 1711 Score = 61.9 bits (31), Expect = 1e-05 Identities = 43/47 (91%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||||| |||||| |||||||||||||||||||| ||||| ||||| Sbjct: 315 gactgcagcggcgagggggtggtgttcgtggaggcggacgcggacgt 361
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Minus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 |||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||||||| Sbjct: 8066407 aagctcgtcgtcgactgcaccggcgagggcgtgatgttcgtcgaggcggacgccgacgt 8066349 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 21801495 aagctggtggtggattgcaccggcgacggcgtggtgttcgtcgaggcggacgccgacgt 21801553 Score = 46.1 bits (23), Expect = 0.69 Identities = 47/55 (85%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggcg 372 |||||||||| |||||| ||||| |||||||||| ||| ||||||||||||| Sbjct: 13502910 gaaggggtggcgttcgtcgaggccaccgccgacgtgcggctggaggagctcggcg 13502964
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 61.9 bits (31), Expect = 1e-05 Identities = 43/47 (91%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||||| |||||| |||||||||||||||||||| ||||| ||||| Sbjct: 13940707 gactgcagcggcgagggggtggtgttcgtggaggcggacgcggacgt 13940753 Score = 50.1 bits (25), Expect = 0.044 Identities = 37/41 (90%) Strand = Plus / Minus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 ||||| |||||||||||||| |||||| |||||||||||| Sbjct: 24392549 gtggtggactgcaccggcgagggggtgtggttcgtggaggc 24392509
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 118678 aagctggtggtggattgcaccggcgacggcgtggtgttcgtcgaggcggacgccgacgt 118736
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 61.9 bits (31), Expect = 1e-05 Identities = 43/47 (91%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||||| |||||| |||||||||||||||||||| ||||| ||||| Sbjct: 101009 gactgcagcggcgagggggtggtgttcgtggaggcggacgcggacgt 101055
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 61.9 bits (31), Expect = 1e-05 Identities = 43/47 (91%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||||| |||||| |||||||||||||||||||| ||||| ||||| Sbjct: 16452 gactgcagcggcgagggggtggtgttcgtggaggcggacgcggacgt 16498
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Minus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 |||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||||||| Sbjct: 104604 aagctcgtcgtcgactgcaccggcgagggcgtgatgttcgtcgaggcggacgccgacgt 104546
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Minus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 |||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||||||| Sbjct: 179 aagctcgtcgtcgactgcaccggcgagggcgtgatgttcgtcgaggcggacgccgacgt 121
>dbj|AK109746.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F02, full insert sequence Length = 1739 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 |||||||| || |||||||||||||| || ||| ||||||| ||||| ||||||||||| Sbjct: 323 aagctcgtcgtcgactgcaccggcgagggcgtgatgttcgtcgaggcggacgccgacgt 381
>dbj|AK109553.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C01, full insert sequence Length = 1642 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 353 aagctggtggtggattgcaccggcgacggcgtggtgttcgtcgaggcggacgccgacgt 411
>dbj|AK071594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102H06, full insert sequence Length = 1713 Score = 61.9 bits (31), Expect = 1e-05 Identities = 43/47 (91%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||||| |||||| |||||||||||||||||||| ||||| ||||| Sbjct: 316 gactgcagcggcgagggggtggtgttcgtggaggcggacgcggacgt 362
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 61.9 bits (31), Expect = 1e-05 Identities = 52/59 (88%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgt 352 ||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 15171 aagctggtggtggattgcaccggcgacggcgtggtgttcgtcgaggcggacgccgacgt 15229
>ref|NM_001061138.1| Oryza sativa (japonica cultivar-group) Os05g0141300 (Os05g0141300) mRNA, complete cds Length = 1335 Score = 60.0 bits (30), Expect = 5e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggag 365 |||||||||||||| || ||| ||||||| ||||| |||||||||||| ||| |||||| Sbjct: 277 gactgcaccggcgagggcgtgctgttcgtcgaggccgacgccgacgtgcggctggaggag 336 Query: 366 ct 367 || Sbjct: 337 ct 338
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 60.0 bits (30), Expect = 5e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggag 365 |||||||||||||| || ||| ||||||| ||||| |||||||||||| ||| |||||| Sbjct: 2315745 gactgcaccggcgagggcgtgctgttcgtcgaggccgacgccgacgtgcggctggaggag 2315686 Query: 366 ct 367 || Sbjct: 2315685 ct 2315684 Score = 52.0 bits (26), Expect = 0.011 Identities = 47/54 (87%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| || |||||||||||||| || |||||||| ||||| |||||| Sbjct: 12488278 aagcttgtggtggagtgcaccggcgaaggcgtcgtgttcgtcgaggccgacgcc 12488331 Score = 52.0 bits (26), Expect = 0.011 Identities = 47/54 (87%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||||||||| || ||||||||||| || || |||||||| ||||| |||||| Sbjct: 14439748 aagctcgtggtggagtgcaccggcgagggcgtcgtgttcgtcgaggccgacgcc 14439801 Score = 50.1 bits (25), Expect = 0.044 Identities = 55/65 (84%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 |||||||||||| ||||||| || ||||||| |||||| |||| | || || ||||||| Sbjct: 3208855 cggagctggtggcgccggcgagggcgacgccgcacgagttcaagccgctgtcggacatcg 3208914 Query: 130 acgac 134 ||||| Sbjct: 3208915 acgac 3208919
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 60.0 bits (30), Expect = 5e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggag 365 |||||||||||||| || ||| ||||||| ||||| |||||||||||| ||| |||||| Sbjct: 43660 gactgcaccggcgagggcgtgctgttcgtcgaggccgacgccgacgtgcggctggaggag 43601 Query: 366 ct 367 || Sbjct: 43600 ct 43599
>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0004A06, complete sequence Length = 153510 Score = 56.0 bits (28), Expect = 7e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtg 353 ||||||||||| ||||||||||| |||||||||||| Sbjct: 144322 gaaggggtggttttcgtggaggccgacgccgacgtg 144357
>ref|NM_001071532.1| Oryza sativa (japonica cultivar-group) Os10g0503300 (Os10g0503300) mRNA, complete cds Length = 1428 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggag 365 |||||||||||||| || ||| ||||| | ||||| |||||||||||| ||||||| | Sbjct: 289 gactgcaccggcgagggcgtgctgttcatcgaggccgacgccgacgtgaggctcgagcac 348 Query: 366 ctcggcggcg 375 ||||||||| Sbjct: 349 ttcggcggcg 358 Score = 46.1 bits (23), Expect = 0.69 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgcc 100 |||||||||||| ||||||| |||||||||| Sbjct: 53 cggagctggtggcgccggcggggccgacgcc 83
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 52.0 bits (26), Expect = 0.011 Identities = 47/54 (87%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||||||||| || ||||||||||| || || |||||||| ||||| |||||| Sbjct: 70456 aagctcgtggtggagtgcaccggcgagggcgtcgtgttcgtcgaggccgacgcc 70509
>gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0628H02, complete sequence Length = 65115 Score = 52.0 bits (26), Expect = 0.011 Identities = 47/54 (87%) Strand = Plus / Plus Query: 294 aagctcgtggttgactgcaccggcgaaggggtggtgttcgtggaggctgacgcc 347 ||||| ||||| || |||||||||||||| || |||||||| ||||| |||||| Sbjct: 21816 aagcttgtggtggagtgcaccggcgaaggcgtcgtgttcgtcgaggccgacgcc 21869
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 306 gactgcaccggcgaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggag 365 |||||||||||||| || ||| ||||| | ||||| |||||||||||| ||||||| | Sbjct: 58469 gactgcaccggcgagggcgtgctgttcatcgaggccgacgccgacgtgaggctcgagcac 58528 Query: 366 ctcggcggcg 375 ||||||||| Sbjct: 58529 ttcggcggcg 58538 Score = 46.1 bits (23), Expect = 0.69 Identities = 29/31 (93%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgcc 100 |||||||||||| ||||||| |||||||||| Sbjct: 58233 cggagctggtggcgccggcggggccgacgcc 58263
>ref|NM_001050107.1| Oryza sativa (japonica cultivar-group) Os01g0615200 (Os01g0615200) mRNA, complete cds Length = 1341 Score = 50.1 bits (25), Expect = 0.044 Identities = 37/41 (90%) Strand = Plus / Plus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 ||||| |||||||||||||| |||||| |||||||||||| Sbjct: 319 gtggtggactgcaccggcgagggggtgtggttcgtggaggc 359
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 50.1 bits (25), Expect = 0.044 Identities = 55/65 (84%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 |||||||||||| ||||||| || ||||||| |||||| |||| | || || ||||||| Sbjct: 86572 cggagctggtggcgccggcgagggcgacgccgcacgagttcaagccgctgtcggacatcg 86631 Query: 130 acgac 134 ||||| Sbjct: 86632 acgac 86636
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 50.1 bits (25), Expect = 0.044 Identities = 37/41 (90%) Strand = Plus / Minus Query: 300 gtggttgactgcaccggcgaaggggtggtgttcgtggaggc 340 ||||| |||||||||||||| |||||| |||||||||||| Sbjct: 138453 gtggtggactgcaccggcgagggggtgtggttcgtggaggc 138413
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 50.1 bits (25), Expect = 0.044 Identities = 55/65 (84%) Strand = Plus / Plus Query: 70 cggagctggtggtgccggcgcggccgacgccccacgaggtcaataccctctccgacatcg 129 |||||||||||| ||||||| || ||||||| |||||| |||| | || || ||||||| Sbjct: 2679 cggagctggtggcgccggcgagggcgacgccgcacgagttcaagccgctgtcggacatcg 2738 Query: 130 acgac 134 ||||| Sbjct: 2739 acgac 2743
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 48.1 bits (24), Expect = 0.18 Identities = 24/24 (100%) Strand = Plus / Minus Query: 716 cggcgaccatgacgacgttgacga 739 |||||||||||||||||||||||| Sbjct: 1753406 cggcgaccatgacgacgttgacga 1753383
>dbj|AP006734.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02K14, TM0918c, complete sequence Length = 26540 Score = 48.1 bits (24), Expect = 0.18 Identities = 24/24 (100%) Strand = Plus / Plus Query: 2284 tcggaagttggacgatgcttgtcg 2307 |||||||||||||||||||||||| Sbjct: 20295 tcggaagttggacgatgcttgtcg 20318
>dbj|AB162016.1| Lotus japonicus CASTOR gene for ion channel, complete cds Length = 17000 Score = 48.1 bits (24), Expect = 0.18 Identities = 24/24 (100%) Strand = Plus / Plus Query: 2284 tcggaagttggacgatgcttgtcg 2307 |||||||||||||||||||||||| Sbjct: 9140 tcggaagttggacgatgcttgtcg 9163
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1123E10 Length = 134641 Score = 46.1 bits (23), Expect = 0.69 Identities = 47/55 (85%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggcg 372 |||||||||| |||||| ||||| |||||||||| ||| ||||||||||||| Sbjct: 82593 gaaggggtggcgttcgtcgaggccaccgccgacgtgcggctggaggagctcggcg 82647
>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome Length = 4008000 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 620 gtgggagagggagatcttcaag 641 |||||||||||||||||||||| Sbjct: 3523980 gtgggagagggagatcttcaag 3523959
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2774 ttgttgggccttttcaacccaattatttgt 2803 ||||||||||||||||| |||| ||||||| Sbjct: 6209219 ttgttgggccttttcaatccaactatttgt 6209190
>gb|BT027956.1| Gasterosteus aculeatus clone CNB80-B09 mRNA sequence Length = 5510 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1097 ctgtgccacggaggagcacttc 1118 |||||||||||||||||||||| Sbjct: 2568 ctgtgccacggaggagcacttc 2547
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 44.1 bits (22), Expect = 2.7 Identities = 46/54 (85%) Strand = Plus / Minus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggc 371 ||||||||||| ||||||||||| | || |||||| ||| |||||||||||| Sbjct: 156406 gaaggggtggttttcgtggaggcgtatgcagacgtgcggctagaggagctcggc 156353
>gb|AY113488.1| Drosophila melanogaster RE47056 full insert cDNA Length = 2522 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2774 ttgttgggccttttcaacccaattatttgt 2803 ||||||||||||||||| |||| ||||||| Sbjct: 2248 ttgttgggccttttcaatccaactatttgt 2219
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 2.7 Identities = 37/42 (88%) Strand = Plus / Minus Query: 329 gttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 |||||| ||||| ||||||||||| ||||| |||||| |||| Sbjct: 1988010 gttcgtcgaggccgacgccgacgtctcgctggaggagttcgg 1987969
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 44.1 bits (22), Expect = 2.7 Identities = 46/54 (85%) Strand = Plus / Plus Query: 318 gaaggggtggtgttcgtggaggctgacgccgacgtgtcgctcgaggagctcggc 371 ||||||||||| ||||||||||| | || |||||| ||| |||||||||||| Sbjct: 25637254 gaaggggtggttttcgtggaggcgtatgcagacgtgcggctagaggagctcggc 25637307
>gb|AC009351.7| Drosophila melanogaster, chromosome 2L, region 26A-26A, BAC clone BACR23K01, complete sequence Length = 173723 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2774 ttgttgggccttttcaacccaattatttgt 2803 ||||||||||||||||| |||| ||||||| Sbjct: 79784 ttgttgggccttttcaatccaactatttgt 79755
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2312 accacaaaggacggtggagttg 2333 |||||||||||||||||||||| Sbjct: 61446 accacaaaggacggtggagttg 61425
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project) Length = 106702 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2312 accacaaaggacggtggagttg 2333 |||||||||||||||||||||| Sbjct: 12638 accacaaaggacggtggagttg 12617
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 44.1 bits (22), Expect = 2.7 Identities = 37/42 (88%) Strand = Plus / Minus Query: 329 gttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 |||||| ||||| ||||||||||| ||||| |||||| |||| Sbjct: 8872 gttcgtcgaggccgacgccgacgtctcgctggaggagttcgg 8831
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548D03 Length = 156709 Score = 44.1 bits (22), Expect = 2.7 Identities = 37/42 (88%) Strand = Plus / Minus Query: 329 gttcgtggaggctgacgccgacgtgtcgctcgaggagctcgg 370 |||||| ||||| ||||||||||| ||||| |||||| |||| Sbjct: 116790 gttcgtcgaggccgacgccgacgtctcgctggaggagttcgg 116749
>gb|AC005285.1|AC005285 Drosophila melanogaster DNA sequence (P1s DS00121 (D128), DS05470 (D270), and DS00108 (D120)), complete sequence Length = 209071 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2774 ttgttgggccttttcaacccaattatttgt 2803 ||||||||||||||||| |||| ||||||| Sbjct: 5614 ttgttgggccttttcaatccaactatttgt 5585
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2513 ttctaaatcgtcgttggcaatc 2534 |||||||||||||||||||||| Sbjct: 402778 ttctaaatcgtcgttggcaatc 402757 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 386,429,238 Number of extensions: 19747214 Number of successful extensions: 103235 Number of sequences better than 10.0: 66 Number of HSP's gapped: 103225 Number of HSP's successfully gapped: 111 Length of query: 2821 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2798 Effective length of database: 18,503,978,556 Effective search space: 51774131999688 Effective search space used: 51774131999688 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
