ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf116k22 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os05g24500:12005.t02107:unspliced-genomic terpene synthase 7, putative, expressed| Length = 1354 Score = 35.9 bits (72), Expect = 0.39 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = +3 / -2 Query: 669 LPVLLYY*LVHMCVYIHVVFFSSCVCMLLYTQMY 770 + VL Y +H+C+YI++ C+ M +Y +Y Sbjct: 363 MSVLYMYMYIHICIYIYIYILRICIYMYIYICIY 262
>LOC_Os01g73750:12001.t06655:unspliced-genomic Leucine Rich Repeat family protein, expressed| Length = 5839 Score = 34.5 bits (69), Expect = 1.0 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +3 / +2 Query: 588 AFAPVRVPYTIRQAMVIRSSTYGSMDTLPVLLYY*LVHMCVYIHVVFFSSCVCMLLYTQM 767 AF P+RV I +R T G TLP + L +C ++ + VC+ L++ + Sbjct: 5090 AFCPIRVTTLIPSFSKVRKMTIGLGTTLPENILCALPDICPFLESLVLRFQVCLWLFSLL 5269 Query: 768 Y 770 + Sbjct: 5270 F 5272
>LOC_Os11g05540:12011.t00446:unspliced-genomic rac GTPase activating protein 1, putative, expressed| Length = 4802 Score = 30.4 bits (60), Expect(3) = 1.2 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 / +2 Query: 676 SYCTTSLYTCAFIYMLYFLAPVYACF 753 SYC +Y Y L+F A YAC+ Sbjct: 1820 SYCGIYIYLSYITYWLFFHANAYACY 1897 Score = 23.1 bits (44), Expect(3) = 1.2 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = +3 / +2 Query: 273 GFAPFCKCVPKKGAGLTDGSML 338 GF P C P + ++DG +L Sbjct: 254 GFGPRCNQSPSRTIPISDGKIL 319 Score = 22.6 bits (43), Expect(3) = 1.2 Identities = 7/20 (35%), Positives = 10/20 (50%) Frame = +2 / +3 Query: 26 ERRTSHGHHQEVHCHSHRAD 85 E R HGH +H H + + Sbjct: 18 EAREKHGHPPCLHLHGQKGE 77
>LOC_Os12g30824:12012.t02788:unspliced-genomic ent-kaurene synthase B, chloroplast precursor, putative, expressed| Length = 18858 Score = 33.6 bits (67), Expect = 1.9 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 / +3 Query: 672 PVLLYY*LVHMCVYIHVVFFSSCVCMLLYTQMYGV 776 P L+ Y L+ +CVYI++V F + M+ Y + G+ Sbjct: 17481 PSLISYYLLCVCVYIYIVVFMLLMMMINYLMLGGI 17585
>LOC_Os01g49529:12001.t04391:unspliced-genomic OsWAK10a - OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK),| expressed Length = 14257 Score = 33.6 bits (67), Expect = 1.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 / -2 Query: 670 FPSYCTTSLYTCAFIYMLYFL 732 FP +C T YTC I +LYFL Sbjct: 9591 FPMFCNTLFYTCIPIKILYFL 9529
>LOC_Os01g27620:12001.t02463:unspliced-genomic hypothetical protein| Length = 973 Score = 33.6 bits (67), Expect = 1.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 / +2 Query: 659 HGHPSRLIVLLACTHVRLYTCC 724 HG +VL+ C+H LYTCC Sbjct: 437 HGRCLEPVVLICCSHSDLYTCC 502
>LOC_Os11g28530:12011.t02465:unspliced-genomic ent-kaurene synthase B, chloroplast precursor, putative, expressed| Length = 14245 Score = 33.1 bits (66), Expect = 2.6 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 / -2 Query: 687 Y*LVHMCVYIHVVFFSSCVCMLLYTQMYGVGYNLRFILLIME*WL 821 Y +++C+YI++++ CV + + Y + L I LI WL Sbjct: 12576 YMYIYICIYIYILYICVCVTVC*ISLSYSIRLKLN*IKLITIEWL 12442
>LOC_Os03g29260:12003.t02550:unspliced-genomic elongation factor 1-delta 2, putative, expressed| Length = 4490 Score = 32.7 bits (65), Expect = 3.6 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 / +3 Query: 213 IDDSFYTSCPDGMVLECILIGFAPFCKCVPKKGAGLTDGSMLPSDG 350 I+D FYT + + C ++ F CK + K GA D + ++G Sbjct: 2634 IEDYFYTEPANEFIQSCDIVAFNKICKFLGKFGAFSLDFQITETNG 2771
>LOC_Os03g14750:12003.t01261:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3013 Score = 32.7 bits (65), Expect = 3.6 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = -3 / -2 Query: 356 TSAVARKHGSIGEAGTLFRHALAKRGESNEYTLQYHAVRTAGIERVVYL 210 TS A ++ L R A A+ +EY L + +R+AGI+ +YL Sbjct: 1449 TSVEATTGDALEAPPDLARAAFARASLQDEYELDNNRIRSAGIQEFIYL 1303
>LOC_Os01g71474:12001.t06443:unspliced-genomic lichenase-2 precursor, putative, expressed| Length = 3841 Score = 32.7 bits (65), Expect = 3.6 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +3 / +1 Query: 696 VHMCVYIHVVFFSSCVCMLLYT 761 V++C + +V+FSSC C L Y+ Sbjct: 3739 VYVCYCVSIVYFSSCACDLYYS 3804
>LOC_Os07g43710:12007.t04015:unspliced-genomic CSLA7 - cellulose synthase-like family A; mannan synthase,| expressed Length = 5183 Score = 32.7 bits (65), Expect = 3.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 / -1 Query: 17 KIIERRTSHGHHQEVHCHSHR 79 + +ERR H HH+ H H HR Sbjct: 518 RAVERRLHHQHHRHHHAHPHR 456
>LOC_Os03g58720:12003.t05125:unspliced-genomic RNA-binding protein 28, putative, expressed| Length = 7246 Score = 32.7 bits (65), Expect = 3.6 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 / +2 Query: 679 YCTTSLYTCAFIYMLYFLAPVYACFYTHRC 768 Y + S+ T F+Y L P C YTH C Sbjct: 4490 YVSPSVRTSYFLYFLLLYQPEVVCMYTH*C 4579
>LOC_Os10g04980:12010.t00377:unspliced-genomic F-box domain containing protein, expressed| Length = 4513 Score = 27.2 bits (53), Expect(2) = 4.7 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +1 / +2 Query: 22 HREKNQPWTPPRGA 63 H PW+PPRGA Sbjct: 611 HTSATPPWSPPRGA 652 Score = 27.2 bits (53), Expect(2) = 4.7 Identities = 8/28 (28%), Positives = 18/28 (64%) Frame = +3 / +1 Query: 687 Y*LVHMCVYIHVVFFSSCVCMLLYTQMY 770 Y V++CVYI++ ++ + + +Y +Y Sbjct: 2917 YIYVYICVYIYIYIYNIYIYIYIYIYIY 3000
>LOC_Os12g41990:12012.t03875:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 1719 Score = 32.2 bits (64), Expect = 4.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 / -1 Query: 671 KGVHATICAGPYYHCLTYGIWHTYGRK 591 KG T+ GP++HC T + H YG + Sbjct: 1395 KGFFHTLWRGPFFHCST*YLVHLYGER 1315
>LOC_Os07g36930:12007.t03362:unspliced-genomic expressed protein| Length = 2917 Score = 32.2 bits (64), Expect = 4.9 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 / -3 Query: 294 CVPKKGAGLTDGSMLPSDGRGDPADQVG 377 C + G S LPSDGR D DQ+G Sbjct: 743 CAQRTPGGRRTDSPLPSDGREDERDQIG 660
>LOC_Os12g04240:12012.t00313:unspliced-genomic grancalcin, putative, expressed| Length = 3145 Score = 32.2 bits (64), Expect = 4.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +1 / +2 Query: 661 WTPFPSYCTTSLYTCAFIYMLYFLAPVY 744 +TP + T ++YTC +Y L F++ +Y Sbjct: 1259 FTPVKGHATLAVYTCYLVY*LLFVSSIY 1342
>LOC_Os09g02070:12009.t00108:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6041 Score = 32.2 bits (64), Expect = 4.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 / -3 Query: 702 CVQASSTIRREGCPCYHMCWTLLPLLDVWY 613 CV A S RR C CY + L +L WY Sbjct: 1884 CVDARSLSRRRCCSCYKVLGLTLAILYDWY 1795
>LOC_Os04g41510:12004.t03710:unspliced-genomic serine/threonine-protein kinase GCN2, putative, expressed| Length = 9098 Score = 32.2 bits (64), Expect = 4.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 / +2 Query: 676 SYCTTSLYTCAFIYMLYFLAPVYACFY 756 S+ T YTC F++ L F + + CF+ Sbjct: 6605 SFFTGGRYTCIFLFFLVFYSSILLCFF 6685
>LOC_Os02g22280:12002.t02016:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 12012 Score = 32.2 bits (64), Expect = 4.9 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 / +1 Query: 805 ISNIKRRLYPTPYICVYKSMHTQELKNTTCI 713 ISN+ R LYP+ YI K H+ N CI Sbjct: 9808 ISNVGRALYPSEYISAMKKHHSCVHINMLCI 9900
>LOC_Os02g52940:12002.t04874:unspliced-genomic inorganic pyrophosphatase, putative, expressed| Length = 3677 Score = 31.8 bits (63), Expect(2) = 5.3 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 / +1 Query: 261 CILIGFAPFCKCVPKKGAGLTDGSMLPS 344 C L+GF C P G G+T G M PS Sbjct: 1177 CALLGFHKRTFCSPMFGGGITQGIMWPS 1260 Score = 22.1 bits (42), Expect(2) = 5.3 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +2 / +3 Query: 785 PPFYITYNG 811 P FYITY+G Sbjct: 2748 PTFYITYSG 2774
>LOC_Os04g30040:12004.t02691:unspliced-genomic jacalin-like lectin domain containing protein, expressed| Length = 11039 Score = 31.8 bits (63), Expect = 6.7 Identities = 10/42 (23%), Positives = 24/42 (57%) Frame = +3 / -1 Query: 633 VIRSSTYGSMDTLPVLLYY*LVHMCVYIHVVFFSSCVCMLLY 758 ++ ST G +PV Y +++ +YI++ + +C++L+ Sbjct: 6281 ILEQSTVGLRILIPVQYIYIYIYIYIYIYIYIYIE*ICLVLH 6156
>LOC_Os04g13520:12004.t01171:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1083 Score = 31.8 bits (63), Expect = 6.7 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +3 / +1 Query: 141 GEIRLPSDGKDDPTAQVGASKLIKIDDSFYTSCPDGMVLECI 266 G +LP DG + A ID+ Y P+G++ +C+ Sbjct: 127 GANKLPDDGTEAEKLSHQAKTYCMIDNDLYKKAPNGVLCKCV 252
>LOC_Os02g49800:12002.t04564:unspliced-genomic aspartic proteinase Asp1 precursor, putative, expressed| Length = 3584 Score = 31.8 bits (63), Expect = 6.7 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = +3 / +1 Query: 471 CGCVPKKGAGLTDGSMSSTANKPGNKXXXXXXXGAGN 581 C C P+ G G GS+ +++++P + AGN Sbjct: 472 CRCTPRHGRGARCGSLETSSSRPEDSIMTAEGASAGN 582
>LOC_Os12g09420:12012.t00821:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 3399 Score = 31.8 bits (63), Expect = 6.8 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -1 / -3 Query: 802 SNIKRRLYPTPYICVYKSMHTQELKNTTCI*THMC 698 S K L P P IC++++ T L+ TT TH C Sbjct: 679 SQPKSALPPQPIICMHRTCSTNCLQATTGFYTHFC 575
>LOC_Os12g01250:12012.t00024:unspliced-genomic csAtPR5, putative| Length = 5206 Score = 31.8 bits (63), Expect = 6.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 / -3 Query: 675 REGCPCYHMCWTLLPLLDVWYMAHVRAQ 592 R C C +C LLPLLD Y+ +R++ Sbjct: 5024 RPACVCNDVCMWLLPLLDAIYVRVLRSE 4941
>LOC_Os04g13630:12004.t01182:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 13114 Score = 31.8 bits (63), Expect = 6.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +1 / -2 Query: 658 AWTPFPSYCTTSLYTCAFIYMLYFLAPVY 744 A+ F +Y +Y C +IY+LY++ +Y Sbjct: 12441 AYICFNTYICIHIYICIYIYILYYIICIY 12355
>LOC_Os03g12160:12003.t01015:unspliced-genomic protein binding protein, putative, expressed| Length = 8381 Score = 31.8 bits (63), Expect = 6.8 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +2 / +1 Query: 689 LACTHVRLYTCCIF*LLCMHAFIHTDVRS 775 L C + ++TC ++ L+C +H+D+RS Sbjct: 8128 LLCIIIFIFTCKVYILICWFL*LHSDIRS 8214
>LOC_Os03g12150:12003.t01014:unspliced-genomic serine/threonine-protein kinase receptor precursor, putative,| expressed Length = 3604 Score = 31.8 bits (63), Expect = 6.8 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +2 / -3 Query: 689 LACTHVRLYTCCIF*LLCMHAFIHTDVRS 775 L C + ++TC ++ L+C +H+D+RS Sbjct: 3407 LLCIIIFIFTCKVYILICWFL*LHSDIRS 3321
>LOC_Os12g41040:12012.t03781:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 11286 Score = 27.6 bits (54), Expect(2) = 7.7 Identities = 8/25 (32%), Positives = 14/25 (56%) Frame = +1 / -1 Query: 694 LYTCAFIYMLYFLAPVYACFYTHRC 768 +Y +IY+ ++ Y C YT+ C Sbjct: 10101 IYIYIYIYIYIYINHAYICIYTYIC 10027 Score = 27.2 bits (53), Expect(2) = 7.7 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +1 / -3 Query: 250 WYWSVYSLDSPLFASACLKRVPASPMDPC 336 W+W +S A A +R PA P PC Sbjct: 10942 WWWGSWSRPCCRRAIALWRRRPAPPPPPC 10856
>LOC_Os01g43380:12001.t03854:unspliced-genomic transferase, transferring glycosyl groups, putative, expressed| Length = 6969 Score = 31.3 bits (62), Expect = 9.3 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +3 / +2 Query: 699 HMCVYIHVVFFSSCVCMLLY 758 ++C IH++F+ C C L Y Sbjct: 2630 YVCSRIHIIFYQDCTCQLKY 2689
>LOC_Os12g24220:12012.t02151:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5083 Score = 31.3 bits (62), Expect = 9.3 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = -2 / -2 Query: 726 IQHVYKRTCVQASSTIRREGCPCYHMCWT 640 + Y++ ++A+ R C C H CWT Sbjct: 4548 VPRTYRKILLRAARWTSRGSCMCKHTCWT 4462
>LOC_Os12g04550:12012.t00344:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 844 Score = 31.3 bits (62), Expect = 9.3 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = -2 / -2 Query: 726 IQHVYKRTCVQASSTIRREGCPCYHMCWT 640 + Y++ ++A+ R C C H CWT Sbjct: 309 VPRTYRKILLRAARWTSRGSCMCKHTCWT 223
>LOC_Os11g15190:12011.t01348:unspliced-genomic RGH1A, putative| Length = 3743 Score = 31.3 bits (62), Expect = 9.3 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 / -1 Query: 541 PGLFAVDDMDPSVRPAPFLGTHPQKGVVPTNIHFCTMPS 425 P LFA+ +DP V P+P + + Q+ + + I T+P+ Sbjct: 1277 PNLFALTKIDPIVYPSPIIQSGLQRFYLSSGILIFTIPN 1161
>LOC_Os09g37830:12009.t03257:unspliced-genomic hypothetical protein| Length = 875 Score = 31.3 bits (62), Expect = 9.3 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = -2 / +2 Query: 720 HVYKRTCVQASSTIRREG 667 H+++R C+QAS+T RR G Sbjct: 98 HIWRRGCLQASATARRRG 151
>LOC_Os07g45060:12007.t04145:unspliced-genomic GPI-anchored protein At5g19240 precursor, putative, expressed| Length = 1998 Score = 31.3 bits (62), Expect = 9.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +2 / +3 Query: 23 IERRTSHGHHQEVHCHSHRA 82 I+R T H HH+ HC HRA Sbjct: 1275 IQRPTLHQHHRSKHCPWHRA 1334
>LOC_Os07g17840:12007.t01643:unspliced-genomic conserved hypothetical protein| Length = 6361 Score = 31.3 bits (62), Expect = 9.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 / +3 Query: 7 NIGQDHREKNQPWTPPRGALP 69 NI + R+KN WTPP A+P Sbjct: 825 NIWKKKRKKNHTWTPPSRAVP 887
>LOC_Os04g38070:12004.t03378:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6232 Score = 31.3 bits (62), Expect = 9.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 / +3 Query: 194 GVKVDQDRRLVLYQLSGRHGTGVYTHWIR 280 G K+++D R+ Q SGR+G G+ W R Sbjct: 2637 GEKIEEDERIKTPQKSGRNGVGLERIWRR 2723
>LOC_Os03g23780:12003.t02073:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5625 Score = 31.3 bits (62), Expect = 9.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 / +3 Query: 194 GVKVDQDRRLVLYQLSGRHGTGVYTHWIR 280 G K+++D R+ Q SGR+G G+ W R Sbjct: 453 GEKIEEDERIKTPQKSGRNGVGLERIWRR 539
>LOC_Os03g16010:12003.t01387:unspliced-genomic BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor,| putative, expressed Length = 5944 Score = 31.3 bits (62), Expect = 9.3 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 / -2 Query: 291 CKKGRIQ*VYTPVPCRPDSWYRTSRL 214 C R+Q +Y PV CRP W RT L Sbjct: 5559 CNYIRLQHLYHPVHCRPLLWQRTYTL 5482
>LOC_Os01g50590:12001.t04493:unspliced-genomic cytochrome P450 3A9, putative| Length = 2946 Score = 31.3 bits (62), Expect = 9.3 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 / -1 Query: 44 GHHQEVHCHSHRAD 85 GHHQE H H H+ D Sbjct: 84 GHHQETHSHGHQGD 43
>LOC_Os01g13390:12001.t01201:unspliced-genomic expressed protein| Length = 2091 Score = 31.3 bits (62), Expect = 9.3 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 / -3 Query: 682 CTTSLYTCAFIYMLYFLAPVYACF 753 CT+ +YTC F+Y F + CF Sbjct: 1588 CTSKIYTCHFLYKRSFFSSGILCF 1517 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 352,071,562 Number of extensions: 5630582 Number of successful extensions: 28159 Number of sequences better than 10.0: 41 Length of query: 283 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 234 Effective length of database: 52,856,264 Effective search space: 12368365776 Effective search space used: 12368365776 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
