>P54643:SP87_DICDI Spore coat protein SP87 precursor - Dictyostelium discoideum (Slime|
           mold)
          Length = 677
 Score = 42.7 bits (99), Expect = 0.002
 Identities = 33/99 (33%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
 Frame = +3

Query: 234 SCPDGMVLECILIGFAPFCKCVPKKGAGLTDGSMLPSDGRGDPADQVGASKLINIEDSFY 413
           +CPDG   EC         KCVP      T GS   S G  +P   V      N  D FY
Sbjct: 320 TCPDGFHCEC---KDGKTAKCVPSP----TTGSSSTSGGNTNPCSNV------NCPDGFY 366

Query: 414 TPCPDGMVQKCIFVGTT-----PFCG--CVPKKGAGLTD 509
             C DG   KC+  G T     P C   C P       D
Sbjct: 367 CECKDGKTAKCVPSGPTQPPKPPVCSLRCPPNHECRFND 405



 Score = 41.2 bits (95), Expect = 0.005
 Identities = 34/112 (30%), Positives = 39/112 (34%)
 Frame = +3

Query: 129 SSGGGEIRLPSDGKDDPTAQVGASKLIKIDDSFYTSCPDGMVLECILIGFAPFCKCVPKK 308
           +SGG      S G  DP   V         D F+  C DG              KCVP  
Sbjct: 259 TSGGSSSTGTSGGHPDPCRDVDCP------DGFHCECKDGKT-----------AKCVPSP 301

Query: 309 GAGLTDGSMLPSDGRGDPADQVGASKLINIEDSFYTPCPDGMVQKCIFVGTT 464
               T GS   S G  DP       K +   D F+  C DG   KC+   TT
Sbjct: 302 ----TTGSSSTSGGHPDPC------KDVTCPDGFHCECKDGKTAKCVPSPTT 343



 Score = 30.4 bits (67), Expect = 9.2
 Identities = 24/90 (26%), Positives = 34/90 (37%)
 Frame = +3

Query: 195 ASKLIKIDDSFYTSCPDGMVLECILIGFAPFCKCVPKKGAGLTDGSMLPSDGRGDPADQV 374
           +S    +     T CP G     I +  +    CVP  G G + GS       G P    
Sbjct: 223 SSSTAGVSSCLTTLCPIGH----ICVEDSNGVNCVPN-GGGTSGGSSSTGTSGGHP---- 273

Query: 375 GASKLINIEDSFYTPCPDGMVQKCIFVGTT 464
              + ++  D F+  C DG   KC+   TT
Sbjct: 274 DPCRDVDCPDGFHCECKDGKTAKCVPSPTT 303

>O60343:TBCD4_HUMAN TBC1 domain family member 4 - Homo sapiens (Human)|
          Length = 1298

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 258 ECILIGFAPFCKCVPKKGAGLTDGSMLPSDGRGDPA 365
           E IL+  APF +CVP  GAG + G+  PS  + +PA
Sbjct: 81  EVILVLSAPFLRCVPAPGAGASGGTS-PSATQPNPA 115

>P03089:COA1_POVJC Coat protein VP1 - JC polyomavirus (JCPyV)|
          Length = 354

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 192 GASKLIKIDDSFYTSCPDGMVLECILIGFAPFCKCVPKKGAGLTDGSMLPSDGRGDPADQ 371
           G SK I I D+F +  P+  +L C  +   P    +P     LT G++L  +      + 
Sbjct: 57  GFSKSISISDTFESDSPNRDMLPCYSVARIP----LPNLNEDLTCGNILMWEAVTLKTEV 112

Query: 372 VGASKLINIEDS 407
           +G + L+N+  +
Sbjct: 113 IGVTSLMNVHSN 124


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 149,951,457
Number of extensions: 3255338
Number of successful extensions: 7364
Number of sequences better than 10.0: 3
Number of HSP's gapped: 7353
Number of HSP's successfully gapped: 5
Length of query: 283
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 171
Effective length of database: 69,965,399
Effective search space: 11964083229
Effective search space used: 11964083229
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)