ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf116k22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC069538.10| Homo sapiens chromosome 10 clone RP11-205C5, com... 48 0.052
2emb|AL358817.19| Human DNA sequence from clone RP11-399N22 on ch... 48 0.052
3gb|AC145291.3| Homo sapiens chromosome 8, clone WI2-82799H6, com... 44 0.81
4ref|XM_624290.2| PREDICTED: Apis mellifera similar to lethal (2)... 44 0.81
5gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, com... 44 0.81
6gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, com... 44 0.81
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.81
8gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, comp... 44 0.81
9emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on ch... 44 0.81
10dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.81
11dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.81
12gb|AF497482.1| Micromonospora echinospora calicheamicin biosynth... 44 0.81
13emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004 44 0.81
14emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G... 44 0.81
15dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP... 44 0.81
16dbj|AK239190.1| Sus scrofa mRNA, clone:THY010071G12, expressed i... 42 3.2
17gb|DQ657217.1| Ginkgo biloba class III HD-Zip protein HDZ33 mRNA... 42 3.2
18gb|DQ385527.1| Ginkgo biloba class III homeodomain-leucine zippe... 42 3.2
19gb|AC122270.4| Mus musculus BAC clone RP23-220N16 from 17, compl... 42 3.2
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.2
21emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 42 3.2
22gb|AC011897.10| Homo sapiens BAC clone RP11-314E10 from 2, compl... 42 3.2
23dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 3.2
24dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.2
25dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.2

>gb|AC069538.10| Homo sapiens chromosome 10 clone RP11-205C5, complete sequence
          Length = 169772
 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 85     tgctctgcctccagctccacacct 108
              ||||||||||||||||||||||||
Sbjct: 162685 tgctctgcctccagctccacacct 162662



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>emb|AL358817.19| Human DNA sequence from clone RP11-399N22 on chromosome 10 Contains 3'
             end of the ADAMTS14 gene for a disintegrin-like and
             metalloprotease (reprolysin type) with thrombospondin type
             1 motif 14,  a novel gene (FLJ32820), and a ribosomal
             protein S26 pseudogene, complete sequence
          Length = 134358

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 85    tgctctgcctccagctccacacct 108
             ||||||||||||||||||||||||
Sbjct: 55761 tgctctgcctccagctccacacct 55784



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>gb|AC145291.3| Homo sapiens chromosome 8, clone WI2-82799H6, complete sequence
          Length = 41705

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 86    gctctgcctccagctccacacc 107
             ||||||||||||||||||||||
Sbjct: 12445 gctctgcctccagctccacacc 12466



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>ref|XM_624290.2| PREDICTED: Apis mellifera similar to lethal (2) k05713 CG8256-PC,
           isoform C (LOC551904), mRNA
          Length = 2202

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 791 ttttatattacttataatggaataat 816
           |||||||| |||||||||||||||||
Sbjct: 40  ttttatatcacttataatggaataat 15



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>gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, complete sequence
          Length = 91099

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 86    gctctgcctccagctccacacc 107
             ||||||||||||||||||||||
Sbjct: 48321 gctctgcctccagctccacacc 48300



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>gb|AC093418.2| Homo sapiens chromosome 3 clone RP11-1035L22, complete sequence
          Length = 206320

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 32   agaaccagccatggacaccaccaaga 57
            ||||||||| ||||||||||||||||
Sbjct: 3500 agaaccagctatggacaccaccaaga 3525



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 709      tttatatacatgttgtattttt 730
                ||||||||||||||||||||||
Sbjct: 24300226 tttatatacatgttgtattttt 24300205



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>gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, complete sequence
          Length = 175699

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 32     agaaccagccatggacaccaccaaga 57
              ||||||||| ||||||||||||||||
Sbjct: 150640 agaaccagctatggacaccaccaaga 150615



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>emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on chromosome 22,
           complete sequence
          Length = 172545

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 714 atacatgttgtattttttagct 735
           ||||||||||||||||||||||
Sbjct: 891 atacatgttgtattttttagct 912



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>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 709   tttatatacatgttgtattttt 730
             ||||||||||||||||||||||
Sbjct: 33419 tttatatacatgttgtattttt 33398



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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 709    tttatatacatgttgtattttt 730
              ||||||||||||||||||||||
Sbjct: 111777 tttatatacatgttgtattttt 111756



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>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete
             sequence
          Length = 90348

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 518   gtcgtcgacggcgaacaagccgggga 543
             ||||||||||||||||| ||||||||
Sbjct: 65315 gtcgtcgacggcgaacacgccgggga 65290



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>emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 714   atacatgttgtattttttagct 735
             ||||||||||||||||||||||
Sbjct: 12935 atacatgttgtattttttagct 12956



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>emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2, complete sequence
          Length = 166239

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 714   atacatgttgtattttttagct 735
             ||||||||||||||||||||||
Sbjct: 10635 atacatgttgtattttttagct 10656



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>dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-72P4, complete
             sequence
          Length = 184770

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 714   atacatgttgtattttttagct 735
             ||||||||||||||||||||||
Sbjct: 91598 atacatgttgtattttttagct 91577



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>dbj|AK239190.1| Sus scrofa mRNA, clone:THY010071G12, expressed in thymus
          Length = 2482

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  gtgctgatgctctgcctccag 98
           |||||||||||||||||||||
Sbjct: 355 gtgctgatgctctgcctccag 335



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>gb|DQ657217.1| Ginkgo biloba class III HD-Zip protein HDZ33 mRNA, partial cds
          Length = 2550

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 749 gcttttatacacacagatgta 769
           |||||||||||||||||||||
Sbjct: 570 gcttttatacacacagatgta 590



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>gb|DQ385527.1| Ginkgo biloba class III homeodomain-leucine zipper protein C3HDZ3
           (C3HDZ3) mRNA, complete cds
          Length = 2514

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 749 gcttttatacacacagatgta 769
           |||||||||||||||||||||
Sbjct: 756 gcttttatacacacagatgta 776



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>gb|AC122270.4| Mus musculus BAC clone RP23-220N16 from 17, complete sequence
          Length = 196395

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 388    tgatcaacatagaggactcat 408
              |||||||||||||||||||||
Sbjct: 148833 tgatcaacatagaggactcat 148813



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 120      cgccgcctctcctccggcggc 140
                |||||||||||||||||||||
Sbjct: 19290069 cgccgcctctcctccggcggc 19290049



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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 553    aggacgatgtcgacgtgggcgccgg 577
              ||||||| |||||||||||||||||
Sbjct: 248137 aggacgacgtcgacgtgggcgccgg 248161



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>gb|AC011897.10| Homo sapiens BAC clone RP11-314E10 from 2, complete sequence
          Length = 200223

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    gtgctgatgctctgcctccag 98
             |||||||||||||||||||||
Sbjct: 22954 gtgctgatgctctgcctccag 22974



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 134    cggcggcggcgagatccggct 154
              |||||||||||||||||||||
Sbjct: 948960 cggcggcggcgagatccggct 948940



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>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0685B10
          Length = 148544

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cgccgcctctcctccggcggc 140
             |||||||||||||||||||||
Sbjct: 19512 cgccgcctctcctccggcggc 19492



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>dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A03
          Length = 109873

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cgccgcctctcctccggcggc 140
             |||||||||||||||||||||
Sbjct: 63082 cgccgcctctcctccggcggc 63062


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 127,877,150
Number of extensions: 6880050
Number of successful extensions: 133695
Number of sequences better than 10.0: 25
Number of HSP's gapped: 133695
Number of HSP's successfully gapped: 25
Length of query: 850
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 828
Effective length of database: 18,508,616,841
Effective search space: 15325134744348
Effective search space used: 15325134744348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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