>Q7FAT5:CCP21_ORYSJ Cyclin-P2-1 - Oryza sativa subsp. japonica (Rice)|
          Length = 217
 Score = 44.7 bits (104), Expect = 7e-04
 Identities = 40/131 (30%), Positives = 60/131 (45%)
 Frame = +3

Query: 210 RAFRGGATPTIPIVEFLERLQRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVVEPATA 389
           RAF  G    + +  FLER  R  Y   S             +R       G+ V  A A
Sbjct: 60  RAFDSGTVLDMSLHAFLERFSR--YANVSPQVYVVAYAYLDRLRRGD----GVRVVSANA 113

Query: 390 HRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRLFIADE 569
            RL++ A+L+ +KFV  R ++     F    G  + ++E+  LEL FL  + +RL ++  
Sbjct: 114 QRLLTTAILVASKFVEDRNYKNSY--FAAVGG--LTAAELSSLELDFLFLMQFRLNVSVS 169

Query: 570 EFQRFFRILER 602
            FQ + R LER
Sbjct: 170 VFQSYCRHLER 180

>O80513:CCU41_ARATH Cyclin-U4-1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 202

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 34/136 (25%), Positives = 56/136 (41%)
 Frame = +3

Query: 195 ENDLVRAFRGGATPTIPIVEFLERLQRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVV 374
           ++  V  F G + PTI I  +LER+ +      S              R P+     + +
Sbjct: 37  QSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSCFVVAYVYLDRFTHRQPS-----LPI 91

Query: 375 EPATAHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRL 554
                HRL+  +V++ AKF+   Y+     +        I + EM  LEL FL  L + L
Sbjct: 92  NSFNVHRLLITSVMVAAKFLDDLYY----NNAYYAKVGGISTKEMNFLELDFLFGLGFEL 147

Query: 555 FIADEEFQRFFRILER 602
            +    F  +F  L++
Sbjct: 148 NVTPNTFNAYFSYLQK 163

>P40186:PCL7_YEAST PHO85 cyclin 7 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 285

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
 Frame = +3

Query: 207 VRAFRGGATPTIPIVEFLERLQR----CNYLFDSXXXXXXXXXXXXFMRSP--AALEAGI 368
           + AF G   P I +V++LER+Q+     N +F S               S      +   
Sbjct: 147 ILAFYGKNVPEIAVVQYLERIQKYCPTTNDIFLSLLVYFDRISKNYGHSSERNGCAKQLF 206

Query: 369 VVEPATAHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNY 548
           V++    HRL+   V I  KF+S  ++      +    G S++  E+  LEL FL   ++
Sbjct: 207 VMDSGNIHRLLITGVTICTKFLSDFFYSN--SRYAKVGGISLQ--ELNHLELQFLILCDF 262

Query: 549 RLFIADEEFQRFFRIL 596
           +L ++ EE Q++  +L
Sbjct: 263 KLLVSVEEMQKYANLL 278

>Q8LB60:CCU31_ARATH Cyclin-U3-1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 221

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 33/135 (24%), Positives = 55/135 (40%)
 Frame = +3

Query: 201 DLVRAFRGGATPTIPIVEFLERLQRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVVEP 380
           D V  F G + P I I  +L+R+ + +    S              ++ A L+      P
Sbjct: 60  DSVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLK------P 113

Query: 381 ATAHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRLFI 560
              HRL+   V++ AK    RYF      +    G + R      +ELLF   L+++L +
Sbjct: 114 LNVHRLIITTVMLAAKVFDDRYFNNAY--YARVGGVTTRELNRLEMELLF--TLDFKLQV 169

Query: 561 ADEEFQRFFRILERR 605
             + F      LE++
Sbjct: 170 DPQTFHTHCCQLEKQ 184

>Q9LY16:CCU42_ARATH Cyclin-U4-2 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 216

 Score = 38.5 bits (88), Expect = 0.051
 Identities = 32/136 (23%), Positives = 58/136 (42%)
 Frame = +3

Query: 195 ENDLVRAFRGGATPTIPIVEFLERLQRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVV 374
           E+  + AF     P+I I  ++ER+ +     DS              + P      + +
Sbjct: 47  EHKRISAFNAVTKPSISIRSYMERIFKYADCSDSCYIVAYIYLDRFIQKQPL-----LPI 101

Query: 375 EPATAHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRL 554
           + +  HRL+  +VL+ AKF+    +     +F    G  I + EM  LEL FL  + ++L
Sbjct: 102 DSSNVHRLIITSVLVSAKFMDDLCYN---NAFYAKVG-GITTEEMNLLELDFLFGIGFQL 157

Query: 555 FIADEEFQRFFRILER 602
            +    +  +   L+R
Sbjct: 158 NVTISTYNDYCSSLQR 173

>Q9LJ45:CCU11_ARATH Cyclin-U1-1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 210

 Score = 37.7 bits (86), Expect = 0.087
 Identities = 33/132 (25%), Positives = 57/132 (43%)
 Frame = +3

Query: 207 VRAFRGGATPTIPIVEFLERLQRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVVEPAT 386
           + AF G   P+I I ++LER+ +      +              + P +L   + V    
Sbjct: 56  LEAFHGVRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNV---- 111

Query: 387 AHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRLFIAD 566
            HRL+   V+I AK +   ++    E +    G S        LELLFL  L++R+ ++ 
Sbjct: 112 -HRLLVTCVMIAAKILDDVHYNN--EFYARVGGVSNADLNKMELELLFL--LDFRVTVSF 166

Query: 567 EEFQRFFRILER 602
             F+ +   LE+
Sbjct: 167 RVFESYCFHLEK 178

>Q7XC35:CCP41_ORYSJ Cyclin-P4-1 - Oryza sativa subsp. japonica (Rice)|
          Length = 212

 Score = 35.0 bits (79), Expect = 0.56
 Identities = 36/131 (27%), Positives = 52/131 (39%)
 Frame = +3

Query: 207 VRAFRGGATPTIPIVEFLERLQRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVVEPAT 386
           V AF+G   P I I  +LER+ R      S              R PA     + V+   
Sbjct: 44  VSAFQGLTKPAISIGGYLERIFRFANCSPSCYVVAYIYLDRFLRRRPA-----LAVDSFN 98

Query: 387 AHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRLFIAD 566
            HRL+  +VL   KFV    +      F    G S+   EM  LE+ FL  + + L +  
Sbjct: 99  VHRLLITSVLTAVKFVDDICYNNAY--FARVGGISL--MEMNYLEVDFLFGIAFDLNVTP 154

Query: 567 EEFQRFFRILE 599
             F  +  +L+
Sbjct: 155 AAFASYCAVLQ 165

>Q9FKF6:CCU43_ARATH Cyclin-U4-3 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 219

 Score = 34.7 bits (78), Expect = 0.74
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
 Frame = +3

Query: 213 AFRGGATPTIPIVEFLERL---QRCNYLFDSXXXXXXXXXXXXFMRSPAALEAGIVVEPA 383
           +F G   P+I I  +LER+     C+Y   S              + P      + +   
Sbjct: 51  SFTGVTKPSISIRSYLERIFEYANCSY---SCYIVAYIYLDRFVKKQPF-----LPINSF 102

Query: 384 TAHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNYRLFIA 563
             HRL+  +VL+ AKF+    +    E +    G  I   EM  LEL FL  + + L + 
Sbjct: 103 NVHRLIITSVLVSAKFMDDLSYNN--EYYAKVGG--ISREEMNMLELDFLFGIGFELNVT 158

Query: 564 DEEFQRFFRILERRPA 611
              F  +   L+R  A
Sbjct: 159 VSTFNNYCCFLQREMA 174

>P40038:PCL6_YEAST PHO85 cyclin 6 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 420

 Score = 34.3 bits (77), Expect = 0.96
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = +3

Query: 369 VVEPATAHRLVSVAVLIGAKFVSPRYFERRVESFQICSGQSIRSSEMCPLELLFLRALNY 548
           V++    HRL+   + +  KF+S  ++      +    G S++  E+  LEL FL   ++
Sbjct: 331 VMDSHNIHRLIIAGITVSTKFLSDFFYSN--SRYSRVGGISLQ--ELNHLELQFLVLCDF 386

Query: 549 RLFIADEEFQRFFRILER 602
            L I+  E QR+  +L R
Sbjct: 387 ELLISVNELQRYADLLYR 404

>Q19QU3:ZRAB2_PIG Zinc finger Ran-binding domain-containing protein 2 - Sus scrofa|
           (Pig)
          Length = 328

 Score = 31.2 bits (69), Expect = 8.1
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = -3

Query: 415 RTATETRRCAVAGSTTIPASSAAGLRMKSXXXXXXXXXXALSNK*LQRWRRSRNSTMGMV 236
           R+ + +     +  ++ P+SS +  R +S            +++   R R S++S+    
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSTSRERSRSRGSKSSSRSHR 262

Query: 235 GVAPPRNARTRSFSAGWEAAEEAKRRDSASTSDAKRR 125
           G + PR     S S+  E   +  R  S+ST D K+R
Sbjct: 263 GSSSPRKRSYSSSSSSPERNRKRSRSRSSSTGDPKKR 299


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 142,093,775
Number of extensions: 2605078
Number of successful extensions: 7531
Number of sequences better than 10.0: 10
Number of HSP's gapped: 7525
Number of HSP's successfully gapped: 10
Length of query: 375
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 260
Effective length of database: 69,142,514
Effective search space: 17977053640
Effective search space used: 17977053640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)