| Clone Name | FLbaf111d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056470.1| Oryza sativa (japonica cultivar-group) Os03g0314700 (Os03g0314700) mRNA, complete cds Length = 1151 Score = 488 bits (246), Expect = e-134 Identities = 417/474 (87%) Strand = Plus / Plus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 253 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 312 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 313 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 372 Query: 379 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 438 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 373 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 432 Query: 439 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 498 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 433 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 492 Query: 499 gacatccgccaggtgttcgacggggaccagcaacccgaagagacgacgcctgaggcggtg 558 || ||||||||||||||||||| || ||||| || | ||| | ||||| |||||||| Sbjct: 493 gatatccgccaggtgttcgacgacgatcagcagccggcggagccaacgccccaggcggtg 552 Query: 559 aaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtgtggaggtg 618 ||| | ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 553 aacggccacctggacatactgcggccggcgatcgccaactacggcgggagcgtggaggtg 612 Query: 619 cttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtccatcgggagt 678 | ||||| |||||||||||||||||||| | |||||| ||||| |||||||||||||| Sbjct: 613 gtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtccatcgggagc 672 Query: 679 ggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgttc 732 || | ||||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 673 gggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtgttc 726
>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full insert sequence Length = 1154 Score = 488 bits (246), Expect = e-134 Identities = 417/474 (87%) Strand = Plus / Plus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 256 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 315 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 316 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 375 Query: 379 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 438 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 376 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 435 Query: 439 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 498 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 436 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 495 Query: 499 gacatccgccaggtgttcgacggggaccagcaacccgaagagacgacgcctgaggcggtg 558 || ||||||||||||||||||| || ||||| || | ||| | ||||| |||||||| Sbjct: 496 gatatccgccaggtgttcgacgacgatcagcagccggcggagccaacgccccaggcggtg 555 Query: 559 aaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtgtggaggtg 618 ||| | ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 556 aacggccacctggacatactgcggccggcgatcgccaactacggcgggagcgtggaggtg 615 Query: 619 cttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtccatcgggagt 678 | ||||| |||||||||||||||||||| | |||||| ||||| |||||||||||||| Sbjct: 616 gtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtccatcgggagc 675 Query: 679 ggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgttc 732 || | ||||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 676 gggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtgttc 729
>emb|CT832741.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN058D24, full insert sequence Length = 957 Score = 305 bits (154), Expect = 2e-79 Identities = 235/262 (89%) Strand = Plus / Plus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 225 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 284 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 285 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 344 Query: 379 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 438 |||||||||||| ||||||| | ||| ||||| |||||| |||| || |||||||||||| Sbjct: 345 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 404 Query: 439 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 498 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || Sbjct: 405 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 464 Query: 499 gacatccgccaggtgttcgacg 520 || ||||||||||||||||||| Sbjct: 465 gatatccgccaggtgttcgacg 486 Score = 210 bits (106), Expect = 7e-51 Identities = 163/182 (89%) Strand = Plus / Plus Query: 551 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 610 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 591 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 650 Query: 611 tggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcca 670 |||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||||||| Sbjct: 651 tggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtcca 710 Query: 671 tcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgt 730 ||||||| || | ||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct: 711 tcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtgt 770 Query: 731 tc 732 || Sbjct: 771 tc 772
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 210 bits (106), Expect = 7e-51 Identities = 163/182 (89%) Strand = Plus / Plus Query: 551 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 610 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 24682 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 24741 Query: 611 tggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcca 670 |||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||||||| Sbjct: 24742 tggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtcca 24801 Query: 671 tcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgt 730 ||||||| || | ||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct: 24802 tcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtgt 24861 Query: 731 tc 732 || Sbjct: 24862 tc 24863 Score = 174 bits (88), Expect = 4e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 24186 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 24245 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 24246 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 24305 Query: 379 gaggacggcgtcgtctccct 398 |||||||||||| ||||||| Sbjct: 24306 gaggacggcgtcatctccct 24325 Score = 137 bits (69), Expect = 8e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 412 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 471 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 24469 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 24528 Query: 472 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 520 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 24529 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 24577
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0085H08, from chromosome 3, complete sequence Length = 126708 Score = 210 bits (106), Expect = 7e-51 Identities = 163/182 (89%) Strand = Plus / Minus Query: 551 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 610 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 35319 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 35260 Query: 611 tggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcca 670 |||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||||||| Sbjct: 35259 tggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtcca 35200 Query: 671 tcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgt 730 ||||||| || | ||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct: 35199 tcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtgt 35140 Query: 731 tc 732 || Sbjct: 35139 tc 35138 Score = 174 bits (88), Expect = 4e-40 Identities = 127/140 (90%) Strand = Plus / Minus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 35815 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 35756 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 35755 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 35696 Query: 379 gaggacggcgtcgtctccct 398 |||||||||||| ||||||| Sbjct: 35695 gaggacggcgtcatctccct 35676 Score = 137 bits (69), Expect = 8e-29 Identities = 99/109 (90%) Strand = Plus / Minus Query: 412 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 471 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 35532 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 35473 Query: 472 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 520 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 35472 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 35424
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 210 bits (106), Expect = 7e-51 Identities = 163/182 (89%) Strand = Plus / Plus Query: 551 aggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagtg 610 ||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct: 11242492 aggcggtgaacggccacctggacatactgcggccggcgatcgccaactacggcgggagcg 11242551 Query: 611 tggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcca 670 |||||||| | ||||| |||||||||||||||||||| | |||||| ||||| ||||||| Sbjct: 11242552 tggaggtggtcgccgtcgacggcgaggactgcctggtgaggtacgaaggccccgagtcca 11242611 Query: 671 tcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtgt 730 ||||||| || | ||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct: 11242612 tcgggagcgggatcaaggcggccatcaaggagaagttcccggacatcaccaatgtggtgt 11242671 Query: 731 tc 732 || Sbjct: 11242672 tc 11242673 Score = 174 bits (88), Expect = 4e-40 Identities = 127/140 (90%) Strand = Plus / Plus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||||||| || |||||||| | ||||||||| |||||| |||| ||||||||||||||| Sbjct: 11241996 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 11242055 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| Sbjct: 11242056 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 11242115 Query: 379 gaggacggcgtcgtctccct 398 |||||||||||| ||||||| Sbjct: 11242116 gaggacggcgtcatctccct 11242135 Score = 137 bits (69), Expect = 8e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 412 gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 471 |||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 11242279 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 11242338 Query: 472 aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 520 |||||||||||||| |||||| | || || ||||||||||||||||||| Sbjct: 11242339 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 11242387
>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence Length = 844 Score = 204 bits (103), Expect = 4e-49 Identities = 220/261 (84%) Strand = Plus / Minus Query: 259 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 318 |||| ||| || |||||||| ||||| ||||| ||||| ||||| ||||||||||||||| Sbjct: 762 ggagncggcctctactcggcggcgacgtacgagctgaccccggaaaacgtcgaccgcgtc 703 Query: 319 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 378 || |||||||| || || ||||||||||| ||| | ||||| ||||||| |||| Sbjct: 702 ctggacgacgtccggccgtacctcatctctgacnnnnncaacgtcaccgtcgttgccgtc 643 Query: 379 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 438 |||||||| ||| ||||||| | ||| ||||| || ||| |||| || ||||||| |||| Sbjct: 642 gaggacggtgtcatctccctcaagctcgaaggagcttgcggcagctgccccagcttgacg 583 Query: 439 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 498 ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| Sbjct: 582 acgacgatgaatatgggcatcgagcgtgtgctcaaggagaagttcggcgacgctttcaag 523 Query: 499 gacatccgccaggtgttcgac 519 || ||||| |||||||||||| Sbjct: 522 gaaatccgtcaggtgttcgac 502 Score = 180 bits (91), Expect = 6e-42 Identities = 163/187 (87%) Strand = Plus / Minus Query: 550 gaggcggtgaaccggcacctggacatactgcgtccggcgatcgcgaactacggcgggagt 609 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 471 gaggcggtgaaccggcacctggacatactgcggccagcgatcgcgaactacggcgggagc 412 Query: 610 gtggaggtgcttgccgttgacggcgaggactgcctggttaagtacgacggcccagagtcc 669 ||||| ||| | ||||| || ||||||||||||||||| | ||||||||| || || ||| Sbjct: 411 gtggatgtgttggccgtcgatggcgaggactgcctggtgaggtacgacgggccggaatcc 352 Query: 670 atcgggagtggagtgaaggcagccatcaaggagaagttccccgacatcacgaatgtggtg 729 ||||| || || | ||||| |||||||||||||| ||||| |||||||| | ||||||| Sbjct: 351 atcggcagcggtatcaaggcggccatcaaggagaaattcccggacatcaccagtgtggtg 292 Query: 730 ttcaccc 736 || |||| Sbjct: 291 tttaccc 285
>gb|U95179.1|PAU95179 Prunus armeniaca putative NifU protein mRNA, partial cds Length = 636 Score = 60.0 bits (30), Expect = 2e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 331 cgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgtagaggacggcgtc 390 |||||||| |||||| | || ||||| ||||||| ||| |||||||| |||||||||||| Sbjct: 43 cgcccctatctcatcgctgatggcggtgacgtcgacgttgtgtccgttgaggacggcgtc 102 Query: 391 gt 392 || Sbjct: 103 gt 104
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 50.1 bits (25), Expect = 0.015 Identities = 55/65 (84%) Strand = Plus / Minus Query: 300 ggataacgtcgaccgcgtcctcgacgacgtgcgcccctacctcatctccgacggcggcga 359 |||||||||||| | ||||||||||| |||||||||| | || |||||||||||| | Sbjct: 3071251 ggataacgtcgagctggtcctcgacgaattgcgcccctatttgatgtccgacggcggcaa 3071192 Query: 360 cgtcg 364 ||||| Sbjct: 3071191 cgtcg 3071187
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 421 agttgtcccagctcgacgacga 442 |||||||||||||||||||||| Sbjct: 3863412 agttgtcccagctcgacgacga 3863391
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.93 Identities = 43/50 (86%) Strand = Plus / Plus Query: 315 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 364 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 1180629 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 1180678
>emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), secG, bcsA, psbK, tgt, sys, end3, pur6, dpdX, dxs, leu1, sek0003, sek0005, sek0006, sek0007, sek0008, sek0009, sek0010, sek0011, sek0012, sel0013, sek0016, sel0017, sek0018, sel0019, sek0020, sek0022, sek0024, sek0025, sek0026, sek0027, sel0028, sek0030, sek0031, sel0032, sel0033, sel0034, sel0035, sel0036, sel0037, sel0039, sek0041, sek0043, sek0044, sek0045, psba-I gene, sek0047 and sel0048 (partial) genes Length = 42558 Score = 44.1 bits (22), Expect = 0.93 Identities = 43/50 (86%) Strand = Plus / Plus Query: 315 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 364 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 14915 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 14964
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 345 ctccgacggcggcgacgtcgcc 366 |||||||||||||||||||||| Sbjct: 317729 ctccgacggcggcgacgtcgcc 317750
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 421 agttgtcccagctcgacgacga 442 |||||||||||||||||||||| Sbjct: 3864086 agttgtcccagctcgacgacga 3864065
>gb|AY840979.1| Bifidobacterium breve prophage-like element, complete sequence Length = 28155 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 692 ccatcaaggagaagttccccga 713 |||||||||||||||||||||| Sbjct: 19253 ccatcaaggagaagttccccga 19232
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.93 Identities = 43/50 (86%) Strand = Plus / Minus Query: 315 cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 364 |||||| ||||| |||||||||||||||| |||| |||||| |||||| Sbjct: 440251 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 440202
>ref|XM_001032436.1| Tetrahymena thermophila SB210 Kinesin motor domain containing protein (TTHERM_00637750) mRNA, complete cds Length = 4788 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 876 atggaaaatgaaatggagtaatttt 900 |||||||||||| |||||||||||| Sbjct: 2614 atggaaaatgaattggagtaatttt 2638
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 ccgacggcggcgacgtcgccg 367 ||||||||||||||||||||| Sbjct: 3288105 ccgacggcggcgacgtcgccg 3288125
>ref|XM_001180788.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA (LOC575541), mRNA Length = 4755 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 atctccgacggcggcgacgtc 363 ||||||||||||||||||||| Sbjct: 1545 atctccgacggcggcgacgtc 1525
>ref|XM_775936.2| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA (LOC575541), mRNA Length = 4755 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 atctccgacggcggcgacgtc 363 ||||||||||||||||||||| Sbjct: 1545 atctccgacggcggcgacgtc 1525
>ref|NM_001070604.1| Oryza sativa (japonica cultivar-group) Os10g0123200 (Os10g0123200) mRNA, complete cds Length = 1686 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 tccgacggcggcgacgtcgccgtcg 370 |||||||||||||| |||||||||| Sbjct: 73 tccgacggcggcgaggtcgccgtcg 49
>gb|BT027946.1| Gasterosteus aculeatus clone CNB77-B05 mRNA sequence Length = 1651 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 692 ccatcaaggagaagttccccg 712 ||||||||||||||||||||| Sbjct: 233 ccatcaaggagaagttccccg 253
>gb|BT027034.1| Gasterosteus aculeatus clone CFW156-B09 mRNA sequence Length = 1656 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 692 ccatcaaggagaagttccccg 712 ||||||||||||||||||||| Sbjct: 261 ccatcaaggagaagttccccg 281
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 553 gcggtgaaccggcacctggac 573 ||||||||||||||||||||| Sbjct: 7470688 gcggtgaaccggcacctggac 7470708
>gb|AC113550.11| Mus musculus chromosome 6, clone RP23-275L12, complete sequence Length = 203865 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 882 aatgaaatggagtaatttttg 902 ||||||||||||||||||||| Sbjct: 51466 aatgaaatggagtaatttttg 51486
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 691 gccatcaaggagaagttccccgacatcac 719 |||||||||||||||| ||| |||||||| Sbjct: 739377 gccatcaaggagaagtacccagacatcac 739405
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 tccgacggcggcgacgtcgccgtcg 370 |||||||||||||| |||||||||| Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 ataacgtcgaccgcgtcctcg 322 ||||||||||||||||||||| Sbjct: 869679 ataacgtcgaccgcgtcctcg 869699
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 tccgacggcggcgacgtcgccgtcg 370 |||||||||||||| |||||||||| Sbjct: 71365 tccgacggcggcgaggtcgccgtcg 71341
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 tccgacggcggcgacgtcgccgtcg 370 |||||||||||||| |||||||||| Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
>emb|AL357493.8| Human DNA sequence from clone RP11-439A17 on chromosome 1 Contains four novel genes, a novel gene (MGC57827), a ribosomal protein L22 (RPL22) pseudogene, a histone 2 H3c (HIST2H3C) pseudogene, the HIST2H2BB gene for histone 2 H2bb, the FCGR1B gene for Fc fragment of IgG high affinity Ib receptor for (CD64) and three CpG islands, complete sequence Length = 189539 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 842 tgtttcctttgggtagaaaaa 862 ||||||||||||||||||||| Sbjct: 114439 tgtttcctttgggtagaaaaa 114419
>dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H10, full insert sequence Length = 1686 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 tccgacggcggcgacgtcgccgtcg 370 |||||||||||||| |||||||||| Sbjct: 73 tccgacggcggcgaggtcgccgtcg 49
>dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102a, complete sequence Length = 54472 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 793 tacgaaatacaacaagatttt 813 ||||||||||||||||||||| Sbjct: 25216 tacgaaatacaacaagatttt 25196
>gb|AY566569.1| Felis catus myocilin mRNA, complete cds Length = 2125 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 ggacatccgccaggtgttcga 518 ||||||||||||||||||||| Sbjct: 943 ggacatccgccaggtgttcga 963
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 ccgacggcggcgacgtcgccg 367 ||||||||||||||||||||| Sbjct: 1373632 ccgacggcggcgacgtcgccg 1373612 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 130,050,379 Number of extensions: 6722811 Number of successful extensions: 168550 Number of sequences better than 10.0: 35 Number of HSP's gapped: 168544 Number of HSP's successfully gapped: 43 Length of query: 978 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 955 Effective length of database: 18,503,978,556 Effective search space: 17671299520980 Effective search space used: 17671299520980 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)