>P40961:PHB1_YEAST Prohibitin-1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 287
 Score = 34.3 bits (77), Expect = 0.80
 Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
 Frame = +1

Query: 343 LYMNYELNY-QYVIENVAIDILTDQATKYTAYDFFMNRGKIGSEMQIALNEVLKNRTYVS 519
           +Y N  L+Y + V+ ++  ++L     ++ A +    R  I  +++  L+    N   + 
Sbjct: 108 IYQNLGLDYDERVLPSIGNEVLKSIVAQFDAAELITQREIISQKIRKELS-TRANEFGIK 166

Query: 520 VPFFQLRDVDLPDPFEEAIQLSEVKKQDIQKANAEMNKIKVEIETKILKAELGKNVTVNY 699
           +    +  +     F +A++  ++ +QD ++A   + K + E +  +++AE         
Sbjct: 167 LEDVSITHMTFGPEFTKAVEQKQIAQQDAERAKFLVEKAEQERQASVIRAE--------- 217

Query: 700 ANGEAESIKQANQA 741
             GEAES +  ++A
Sbjct: 218 --GEAESAEFISKA 229

>Q9HNJ8:SYS_HALSA Seryl-tRNA synthetase - Halobacterium salinarium (Halobacterium|
           halobium)
          Length = 460

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 19/90 (21%), Positives = 44/90 (48%)
 Frame = +1

Query: 469 EMQIALNEVLKNRTYVSVPFFQLRDVDLPDPFEEAIQLSEVKKQDIQKANAEMNKIKVEI 648
           E++   +E+  +R  VS    +L+     D  +EAI+ S+  K ++    A  + ++ E+
Sbjct: 39  ELKARGDELRHDRNEVSSKIGELKQAGDEDAAQEAIERSQALKDELADVEARADDLEAEL 98

Query: 649 ETKILKAELGKNVTVNYANGEAESIKQANQ 738
           E  +L   +  +      + EAE++++  +
Sbjct: 99  ERLLLTLPMVPDEDAPVGDSEAENVERRRE 128

>Q6MEN1:SYE_PARUW Glutamyl-tRNA synthetase - Protochlamydia amoebophila (strain|
           UWE25)
          Length = 502

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +1

Query: 286 EVLLEISFQYELISNKIYDLYMNYELNYQYVIENVAIDILTDQATKYTAYDFFMNR 453
           +++ E  ++   +S  I+D+     +N QY+I+N+ ++ L D+  +++  D FM R
Sbjct: 295 DIIREFDYKRIGVSGAIFDVQKLDWVNQQYLIKNIPVEQLWDRIKEWSFNDEFMQR 350

>O67137:GYRB_AQUAE DNA gyrase subunit B - Aquifex aeolicus|
          Length = 792

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 24/104 (23%), Positives = 46/104 (44%)
 Frame = +1

Query: 433 YDFFMNRGKIGSEMQIALNEVLKNRTYVSVPFFQLRDVDLPDPFEEAIQLSEVKKQDIQK 612
           Y     RG++   + + + E  K  T VS           PDP  E  + +E+K   ++K
Sbjct: 147 YRMAFKRGEVVEPLHV-VGETKKRGTKVSFK---------PDP--EIFETTEIKFDIVEK 194

Query: 613 ANAEMNKIKVEIETKILKAELGKNVTVNYANGEAESIKQANQAE 744
              E+  +  E++ ++    LGK++   +  G  E +K  N+ +
Sbjct: 195 RVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGK 238

>P27309:NUSG_STRVG Transcription antitermination protein nusG - Streptomyces virginiae|
          Length = 299

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 610 KANAEMNKIKVEIETKILKAELGKNVTVNYANGEAESIKQANQAEVNGFNVTEMSLINGY 789
           KAN E   + + +E  I +AE+ +   V   NGE ++++   Q ++ G+ +  M L N  
Sbjct: 126 KANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVR---QNKLPGYVLVRMDLTNES 182

Query: 790 YSLKEGT 810
           + +   T
Sbjct: 183 WGVVRNT 189

>P36260:NUSG_STRGR Transcription antitermination protein nusG - Streptomyces griseus|
          Length = 294

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 610 KANAEMNKIKVEIETKILKAELGKNVTVNYANGEAESIKQANQAEVNGFNVTEMSLINGY 789
           KAN E   + + +E  I +AE+ +   V   NGE ++++   Q ++ G+ +  M L N  
Sbjct: 121 KANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVR---QNKLPGYVLVRMDLTNES 177

Query: 790 YSLKEGT 810
           + +   T
Sbjct: 178 WGVVRNT 184

>P47480:TIG_MYCGE Trigger factor - Mycoplasma genitalium|
          Length = 444

 Score = 32.3 bits (72), Expect = 3.0
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
 Frame = +1

Query: 304 SFQYELISNKIYD--LYMNYELNYQYVIENVAIDILTDQATKYTAYDFFMNRGKIGSEMQ 477
           S+ ++L+ NK  +  L  N +   Q+++ N  +  L +   K  A      +     + +
Sbjct: 281 SYFHKLMENKKQETILQENNQKIRQFLLTNTKLPFLPEALIKLEANRLLKLQQSQAEQYK 340

Query: 478 IALNEVLKNRTYVSVPFFQLRDVDLPDPFEEAIQLSEVKK-QDIQKANAEMNKIKVEIET 654
           I   ++L      ++   +L+D ++ +  E       +KK  DI+K   + NKIK EIE 
Sbjct: 341 IPFEKLLSAS---NITLTELQDRNIKEAKENVTFALVMKKIADIEKIKVDNNKIKAEIEN 397

Query: 655 KI 660
            I
Sbjct: 398 VI 399

>P52852:NUSG_STRGB Transcription antitermination protein nusG - Streptomyces galbus|
          Length = 309

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +1

Query: 610 KANAEMNKIKVEIETKILKAELGKNVTVNYANGEAESIKQANQAEVNGFNVTEMSLINGY 789
           K N E   + + +E  I +AE+ +   V   NG+ ++IK   Q ++ G+ +  M L N  
Sbjct: 141 KTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIK---QNKLPGYVLVRMDLTNES 197

Query: 790 YSLKEGT 810
           + +   T
Sbjct: 198 WGVVRNT 204

>P57453:DEAD_BUCAI Cold-shock DEAD box protein A homolog - Buchnera aphidicola subsp.|
           Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic
           bacterium)
          Length = 601

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 18/91 (19%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +1

Query: 592 KKQDIQKANAEMNKIKVEIETKILKAELGKN--VTVNYANGEAESIKQANQAEVNGFNVT 765
           +++D + +    ++  +  + ++ + E+G+N  V V +  G       AN+  +N  N+ 
Sbjct: 455 RREDNRNSRTRRDRRDINKDAELYRIEVGRNDGVEVRHIVGAI-----ANEGNINSRNIG 509

Query: 766 EMSLINGYYSLKEGTGMNNTNLLNYIKTQIV 858
            + L + Y +++   GM+   L  + +T+I+
Sbjct: 510 NIKLFSSYSTIELPKGMSKDLLQTFNRTRIL 540

>Q58519:DAPF_METJA Diaminopimelate epimerase - Methanococcus jannaschii|
          Length = 295

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 466 SEMQIALNEVLKNRTYVSVPFFQLRDVDL-PDPFEEAIQLSEVKKQDIQKANAEMNKIKV 642
           SEM+I  +EV K + Y+ VP F+L+D+ +  D ++E     E    +++  N  + K+K+
Sbjct: 108 SEMEIEGDEVKKIKVYMGVPKFKLKDIPMVVDGYKED---DEFLNGELKLKNPYLPKVKL 164

Query: 643 EI 648
            +
Sbjct: 165 SV 166

>Q8R9D0:MUTS2_THETN MutS2 protein - Thermoanaerobacter tengcongensis|
          Length = 790

 Score = 31.6 bits (70), Expect = 5.2
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +1

Query: 562 FEEAIQLSEVKKQDIQKANAEMNKIKVEIETKILKAELGK 681
           FE+ I+  E K++D++ A  E+ ++K E+E  +LK EL K
Sbjct: 518 FEDVIKDVEEKRKDLENAYQEVERLKKEVE--VLKEELEK 555

>P35417:MYSP_ECHGR Paramyosin - Echinococcus granulosus|
          Length = 863

 Score = 31.2 bits (69), Expect = 6.7
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +1

Query: 469 EMQIALNEVLKNRTYVSVPFFQLR-DVD-LPDPFEEAIQLSEVKKQDIQKANAEMNKIKV 642
           +++ A++E  +NR  +      L+ D D L   +EE  + +   +  + K NA+M  +K 
Sbjct: 226 DLKRAMDEDARNRLNLQTQLSSLQMDYDNLQARYEEEAEAAGNLRNQVAKFNADMAALKT 285

Query: 643 EIETKILK-----AELGKNVTVNYANGEAESIKQANQAEVNGFNVTEMSL 777
            +E +++       EL + +TV     E E I +  +   N    T++ L
Sbjct: 286 RLERELMAKTEEFEELKRKLTVRIT--ELEDIAEHERTRANNLEKTKVKL 333

>P48077:HEM1_CYAPA Glutamyl-tRNA reductase - Cyanophora paradoxa|
          Length = 432

 Score = 31.2 bits (69), Expect = 6.7
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = +1

Query: 571 AIQLSEVKKQDIQKANAEMNKIKVEIETKILKAELGKNV-TVNYANGEAESIK----QAN 735
           A++L+++KKQD++ AN  +     ++   +++  L K V  +N  N   E  K    Q  
Sbjct: 169 AVELAQIKKQDLRTANITILGAG-KMSRLLVQHLLSKRVKDINIVNRSVERAKLLVDQFK 227

Query: 736 QAEVNGFNVTEMSLI 780
           +A +N +N++E+  I
Sbjct: 228 EANINIYNLSELKTI 242

>Q8DVF6:TRPD_STRMU Anthranilate phosphoribosyltransferase - Streptococcus mutans|
          Length = 335

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +1

Query: 514 VSVPFFQLRDVDLPDPFEEAIQLSEVKKQDIQKANAEMNKIKVEIETKILKAELGKNVTV 693
           +S   F   D D+P    E I+  + K+      +   N+    +ET +L A LG     
Sbjct: 242 ISQGSFTFEDFDMPKVTLEDIKGGDAKENAQILVSVLKNEPSPYLETTLLNAGLG----- 296

Query: 694 NYANGEAESIKQ 729
            YANG+ +SIK+
Sbjct: 297 FYANGKVDSIKE 308

>O51641:TRMD_BORBU tRNA - Borrelia burgdorferi (Lyme disease spirochete)|
          Length = 239

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 5/202 (2%)
 Frame = +1

Query: 76  SFDSIEYTEYGLDYSAVSKSVDSKPYLGGIYLL----GVGHSFIKFPRTVITIDFSNDRG 243
           SF+ ++  ++  D     K  D  PY GG  ++     +  +         T  F +  G
Sbjct: 32  SFELVDVRDFSKDKH---KRCDDLPYGGGAGMVLKAEPISFALEHVESAKKTTIFLSPSG 88

Query: 244 SDRPQIESRTSDGLEVLLEISFQYELISNKIYDLYMNYELNY-QYVIENVAIDILTDQAT 420
               Q  + +    E ++ I  +YE I  +I DLY+++E++   YV+ +  I  L    +
Sbjct: 89  IKYSQELAYSLSKREEIVIICGRYEGIDQRIIDLYVDFEISIGDYVLSSGEIAALVLIDS 148

Query: 421 KYTAYDFFMNRGKIGSEMQIALNEVLKNRTYVSVPFFQLRDVDLPDPFEEAIQLSEVKKQ 600
            Y   D  +N   +  E     N +L+   Y     +  + + +P+        + +K  
Sbjct: 149 VYRLLDGVINPNSLLEESFGVKNGLLEYPHYTRP--YDFKGIKVPEVLLSG-HHANIKNW 205

Query: 601 DIQKANAEMNKIKVEIETKILK 666
            + KA  +  K + ++  K L+
Sbjct: 206 RLVKAREKTKKNRYDLYLKYLE 227

>Q8T305:MYSP_TAESA Paramyosin - Taenia saginata (Beef tapeworm)|
          Length = 863

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
 Frame = +1

Query: 469 EMQIALNEVLKNRTYVSVPFFQLR-DVD-LPDPFEEAIQLSEVKKQDIQKANAEMNKIKV 642
           +++ A++E  +NR  +      L+ D D L   +EE  + +   +  + K NA+M  +K 
Sbjct: 226 DLKRAMDEDARNRLNLQTQLSSLQMDYDNLQARYEEEAEAAGNLRNQVAKFNADMAALKT 285

Query: 643 EIETKILK-----AELGKNVTVNYANGEAESIKQANQAEVNGFNVTEMSL---INGYYSL 798
            +E +++       EL + +TV     E E + +  +   N    T++ L   I    + 
Sbjct: 286 RLERELMAKTEEFEELKRKLTVRIT--ELEDMAEHERTRANNLEKTKVKLTLEIKDLQAE 343

Query: 799 KEGTGMNNTNLLNYIK 846
            E     N  L + +K
Sbjct: 344 NEALAAENGELTHRVK 359

>Q6FCE6:HSCA_ACIAD Chaperone protein hscA homolog - Acinetobacter sp. (strain ADP1)|
          Length = 620

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 36/164 (21%), Positives = 66/164 (40%)
 Frame = +1

Query: 400 ILTDQATKYTAYDFFMNRGKIGSEMQIALNEVLKNRTYVSVPFFQLRDVDLPDPFEEAIQ 579
           I TD      +   FM R K   + Q           YV V      D ++P     A +
Sbjct: 74  ITTDPKNSIISVKRFMGRSKADIKFQ---------HPYVLVG----NDNEMP-----AFE 115

Query: 580 LSEVKKQDIQKANAEMNKIKVEIETKILKAELGKNVTVNYANGEAESIKQANQAEVNGFN 759
            ++ +K  ++ + A +N++K+  E  +     G  +TV     EA+     + A++ G N
Sbjct: 116 TAQGRKTPVEISAAILNQLKIRAEESLKNPINGAVITVPAYFDEAQRQATRDAAQLAGLN 175

Query: 760 VTEMSLINGYYSLKEGTGMNNTNLLNYIKTQIVQTYRGDKLVVS 891
           V  + L+N   +     G++  N L+  +  ++    G    VS
Sbjct: 176 V--LRLLNEPTAAAIAYGLDQENQLSSDRNYVIYDLGGGTFDVS 217

>P48633:HMWP2_YERE8 High-molecular-weight protein 2 - Yersinia enterocolitica serotype|
           O:8 / biotype 1B (strain 8081)
          Length = 2035

 Score = 30.8 bits (68), Expect = 8.8
 Identities = 15/84 (17%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 433 YDFFMNRGKIGSEMQIALNEVLKNRTYVSVPFF-QLRDVDLPDPFEEAIQLSEVKKQDIQ 609
           Y  F       S+++ A+  +L+    + + F    + V LP P+   + + +++  D +
Sbjct: 142 YQEFEGHCLTASQLEQAITTLLQRHPMLHIAFRPDGQQVWLPQPYWNGVTVHDLRHNDAE 201

Query: 610 KANAEMNKIKVEIETKILKAELGK 681
              A ++ ++  +  ++L+ E+G+
Sbjct: 202 SRQAYLDALRQRLSHRLLRVEIGE 225


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 125,609,572
Number of extensions: 2308730
Number of successful extensions: 6553
Number of sequences better than 10.0: 18
Number of HSP's gapped: 6548
Number of HSP's successfully gapped: 18
Length of query: 326
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 213
Effective length of database: 69,691,104
Effective search space: 14844205152
Effective search space used: 14844205152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)