| Clone Name | FLbaf108a17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001048813.1| Oryza sativa (japonica cultivar-group) Os01g0192600 (Os01g0192600) mRNA, complete cds Length = 1480 Score = 928 bits (468), Expect = 0.0 Identities = 900/1044 (86%) Strand = Plus / Plus Query: 123 catgggggactcgagcgggtcggtgtccatcgacgtggagcggatctacttcggcggcaa 182 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 101 catgggggactcgagccggtcggtgtccatcgacgtggagcggatctccttcggcggcaa 160 Query: 183 ggagcatcctgtgagaacaagatacggccctgtatctgtatccgtgtacggagacgaaga 242 ||| || | ||| |||| ||||| ||| |||||||||| || || | ||||| ||||| Sbjct: 161 ggaacaccgagtgcgaaccagatatggctctgtatctgtttctgtatttggagatgaaga 220 Query: 243 caagccagcgctcataacgtacccggatgtagctctgaattacatgtcctgcttccaagg 302 |||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 221 caagccggcgctcataacatacccggatgtagctctaaattatatgtcttgctttcaagg 280 Query: 303 attgttcttctgcccagaggctgcgtccctgttgcttcacaatttttgtatctaccatat 362 ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || Sbjct: 281 attgttcttctgcccagaggccgcgtcgctgttgcttcacaatttttgtatttaccacat 340 Query: 363 tactcctcaaggccatgagttgggagcagctccgattccatcggatgtacctgagctatc 422 ||||||||||| |||||||||||||| ||||| ||| |||| ||||| || | || ||| Sbjct: 341 cactcctcaaggtcatgagttgggagcggctccaatttcatccgatgtgcccgtgccatc 400 Query: 423 tgttgataatctcgcggatcaggtcgcggacgttcttgatttctttggtttagggtctgt 482 ||||||| | || | |||||| |||||||| |||||||||||||| || ||||| ||||| Sbjct: 401 tgttgatgagcttgtggatcaagtcgcggatgttcttgatttcttcggattaggatctgt 460 Query: 483 gatgtgcatgggtgtcaccgccggtgcctacgtgcttaccctctttgcagcaaagtacag 542 |||||| |||||||||| |||||||||||| | || |||||||||||| |||| ||| | Sbjct: 461 gatgtgtttgggtgtcactgccggtgcctacattctcaccctctttgcaacaaaataccg 520 Query: 543 ggaaagggttcttggcctgatgttggtttcacctctatgcaaagccccatcttggagtga 602 ||| || || ||||||| ||| | ||||| || |||||||||||||| |||||||| || Sbjct: 521 ggatagagtgattggccttatgctagtttcgccgctatgcaaagccccttcttggagcga 580 Query: 603 gtggttgtataacaaggtattgctaaacttactttattattgtggtactagtggactagt 662 ||||||||| || |||||||| ||||||| ||||| |||| ||| | | |||| ||||| Sbjct: 581 gtggttgtacaataaggtattattaaacttgctttactattatgggagtcgtgggctagt 640 Query: 663 gaacgaatgcctccttcagcggtattttagcacggaagttcgtggtagtggacaagaacc 722 || |||||| | |||||||||||||||||||||||||||||||| | ||||||||| || Sbjct: 641 caaggaatgcttgcttcagcggtattttagcacggaagttcgtgggaatggacaagaccc 700 Query: 723 tgaatcggaaattgtccaggcctgtagaagtttacttgatcagaggcagggtgttaatgt 782 |||||| || ||||| || |||||||||||||||||| || || | ||||| |||||| Sbjct: 701 tgaatcagagattgtgcaagcctgtagaagtttacttcatgagcgacagggatctaatgt 760 Query: 783 atgtcgattccttaaagcaataaacgagaggcatgacataactgaagcactgaagaagct 842 ||| ||||||||| | || ||||||||||| |||||| | || ||||| |||||||||| Sbjct: 761 atggcgattccttcaggcgataaacgagagacatgacctgacggaagcgttgaagaagct 820 Query: 843 ccggtgccggacgctgattttcgtgggagagaactcacagtttcatgccgacgctgtcca 902 | ||| ||||| |||||||| |||||||||||||||||||| || | |||||| ||||| Sbjct: 821 tcagtgtcggacactgatttttgtgggagagaactcacagttccacgacgacgcagtcca 880 Query: 903 catgaccacgaaactagatcggagatactgcgccctagtcgaggttcaggcatgcgggtc 962 |||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 881 tatgaccacaaagctagaccggagatattgcgccctagtcgaggttcaggcatgcgggtc 940 Query: 963 gctggtcaccgaggagcagccacacgcaatgctgatcccgatggagtacttcttgatggg 1022 || |||||||||||||| || ||||| ||| ||||||| |||||||||||| | ||||| Sbjct: 941 actcgtcaccgaggagcaaccgcacgcgatgttgatccccatggagtacttcctcatggg 1000 Query: 1023 atacgggctctacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgtt 1082 ||| |||||||||||||| |||||||| || ||||||||||| ||||| |||||||| || Sbjct: 1001 atatgggctctacagaccttcccagctggatagcagcccccggagcacactgaacccatt 1060 Query: 1083 ctgcatatcgccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaa 1142 ||| |||||||| || || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 1061 ctgtatatcgcctgaacttctgtcaccggagagcatgggagtgaagctgaagcccatcaa 1120 Query: 1143 gactcggacctccctcaatgttta 1166 |||||||| ||| ||||| ||||| Sbjct: 1121 gactcggatctcgctcaaagttta 1144
>dbj|AK100731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117I22, full insert sequence Length = 1481 Score = 928 bits (468), Expect = 0.0 Identities = 900/1044 (86%) Strand = Plus / Plus Query: 123 catgggggactcgagcgggtcggtgtccatcgacgtggagcggatctacttcggcggcaa 182 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 102 catgggggactcgagccggtcggtgtccatcgacgtggagcggatctccttcggcggcaa 161 Query: 183 ggagcatcctgtgagaacaagatacggccctgtatctgtatccgtgtacggagacgaaga 242 ||| || | ||| |||| ||||| ||| |||||||||| || || | ||||| ||||| Sbjct: 162 ggaacaccgagtgcgaaccagatatggctctgtatctgtttctgtatttggagatgaaga 221 Query: 243 caagccagcgctcataacgtacccggatgtagctctgaattacatgtcctgcttccaagg 302 |||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 222 caagccggcgctcataacatacccggatgtagctctaaattatatgtcttgctttcaagg 281 Query: 303 attgttcttctgcccagaggctgcgtccctgttgcttcacaatttttgtatctaccatat 362 ||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || Sbjct: 282 attgttcttctgcccagaggccgcgtcgctgttgcttcacaatttttgtatttaccacat 341 Query: 363 tactcctcaaggccatgagttgggagcagctccgattccatcggatgtacctgagctatc 422 ||||||||||| |||||||||||||| ||||| ||| |||| ||||| || | || ||| Sbjct: 342 cactcctcaaggtcatgagttgggagcggctccaatttcatccgatgtgcccgtgccatc 401 Query: 423 tgttgataatctcgcggatcaggtcgcggacgttcttgatttctttggtttagggtctgt 482 ||||||| | || | |||||| |||||||| |||||||||||||| || ||||| ||||| Sbjct: 402 tgttgatgagcttgtggatcaagtcgcggatgttcttgatttcttcggattaggatctgt 461 Query: 483 gatgtgcatgggtgtcaccgccggtgcctacgtgcttaccctctttgcagcaaagtacag 542 |||||| |||||||||| |||||||||||| | || |||||||||||| |||| ||| | Sbjct: 462 gatgtgtttgggtgtcactgccggtgcctacattctcaccctctttgcaacaaaataccg 521 Query: 543 ggaaagggttcttggcctgatgttggtttcacctctatgcaaagccccatcttggagtga 602 ||| || || ||||||| ||| | ||||| || |||||||||||||| |||||||| || Sbjct: 522 ggatagagtgattggccttatgctagtttcgccgctatgcaaagccccttcttggagcga 581 Query: 603 gtggttgtataacaaggtattgctaaacttactttattattgtggtactagtggactagt 662 ||||||||| || |||||||| ||||||| ||||| |||| ||| | | |||| ||||| Sbjct: 582 gtggttgtacaataaggtattattaaacttgctttactattatgggagtcgtgggctagt 641 Query: 663 gaacgaatgcctccttcagcggtattttagcacggaagttcgtggtagtggacaagaacc 722 || |||||| | |||||||||||||||||||||||||||||||| | ||||||||| || Sbjct: 642 caaggaatgcttgcttcagcggtattttagcacggaagttcgtgggaatggacaagaccc 701 Query: 723 tgaatcggaaattgtccaggcctgtagaagtttacttgatcagaggcagggtgttaatgt 782 |||||| || ||||| || |||||||||||||||||| || || | ||||| |||||| Sbjct: 702 tgaatcagagattgtgcaagcctgtagaagtttacttcatgagcgacagggatctaatgt 761 Query: 783 atgtcgattccttaaagcaataaacgagaggcatgacataactgaagcactgaagaagct 842 ||| ||||||||| | || ||||||||||| |||||| | || ||||| |||||||||| Sbjct: 762 atggcgattccttcaggcgataaacgagagacatgacctgacggaagcgttgaagaagct 821 Query: 843 ccggtgccggacgctgattttcgtgggagagaactcacagtttcatgccgacgctgtcca 902 | ||| ||||| |||||||| |||||||||||||||||||| || | |||||| ||||| Sbjct: 822 tcagtgtcggacactgatttttgtgggagagaactcacagttccacgacgacgcagtcca 881 Query: 903 catgaccacgaaactagatcggagatactgcgccctagtcgaggttcaggcatgcgggtc 962 |||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 882 tatgaccacaaagctagaccggagatattgcgccctagtcgaggttcaggcatgcgggtc 941 Query: 963 gctggtcaccgaggagcagccacacgcaatgctgatcccgatggagtacttcttgatggg 1022 || |||||||||||||| || ||||| ||| ||||||| |||||||||||| | ||||| Sbjct: 942 actcgtcaccgaggagcaaccgcacgcgatgttgatccccatggagtacttcctcatggg 1001 Query: 1023 atacgggctctacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgtt 1082 ||| |||||||||||||| |||||||| || ||||||||||| ||||| |||||||| || Sbjct: 1002 atatgggctctacagaccttcccagctggatagcagcccccggagcacactgaacccatt 1061 Query: 1083 ctgcatatcgccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaa 1142 ||| |||||||| || || ||||| || ||||||||||| |||||||||||||||||||| Sbjct: 1062 ctgtatatcgcctgaacttctgtcaccggagagcatgggagtgaagctgaagcccatcaa 1121 Query: 1143 gactcggacctccctcaatgttta 1166 |||||||| ||| ||||| ||||| Sbjct: 1122 gactcggatctcgctcaaagttta 1145
>dbj|AK240819.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065009N02, full insert sequence Length = 1325 Score = 331 bits (167), Expect = 4e-87 Identities = 788/995 (79%) Strand = Plus / Plus Query: 154 gacgtggagcggatctacttcggcggcaaggagcatcctgtgagaacaagatacggccct 213 ||||| |||||||| | |||||||||||||||||||| ||||| || |||| ||| | Sbjct: 113 gacgtcgagcggatttccttcggcggcaaggagcatcaagtgaggacgagatgcggttca 172 Query: 214 gtatctgtatccgtgtacggagacgaagacaagccagcgctcataacgtacccggatgta 273 |||| || | | ||||||||||| |||||||| |||||||| ||||||||||| | Sbjct: 173 ttatccgtcgcgatatacggagacgaggacaagccggcgctcatcacgtacccggacatc 232 Query: 274 gctctgaattacatgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctg 333 || |||| ||||||||||||||||||||||| | || ||||| |||| ||||| ||| Sbjct: 233 gcgttgaaccacatgtcctgcttccaaggattgctgttttgccccgaggtggcgtcgctg 292 Query: 334 ttgcttcacaatttttgtatctaccatattactcctcaaggccatgagttgggagcagct 393 |||| |||||||| || || ||||| || | |||||| || || ||| | ||||| ||| Sbjct: 293 ctgctccacaatttctgcatataccacataaatcctcaggggcacgagctaggagcggct 352 Query: 394 ccgattccatcggatgtacctgagctatctgttgataatctcgcggatcaggtcgcggac 453 || |||||||| ||||| || | || |||||| || ||||||| |||||||| ||||| Sbjct: 353 ccaattccatccgatgtgccggtgccatctgtagaggatctcgccgatcaggttgcggat 412 Query: 454 gttcttgatttctttggtttagggtctgtgatgtgcatgggtgtcaccgccggtgcctac 513 || || |||||||| || ||||| |||||||||||| ||||||| || || |||||||| Sbjct: 413 gtgctcgatttcttcggattaggatctgtgatgtgcctgggtgttacagctggtgcctat 472 Query: 514 gtgcttaccctctttgcagcaaagtacagggaaagggttcttggcctgatgttggtttca 573 || || || || |||||| | || ||| |||| ||||| | ||| ||||||||||||| Sbjct: 473 gtcctcactctgtttgcaacgaaataccgggagagggtaataggcttgatgttggtttcc 532 Query: 574 cctctatgcaaagccccatcttggagtgagtggttgtataacaaggtattgctaaactta 633 |||||||||| ||||||||| |||||||| ||||||||||| |||||||| |||| || Sbjct: 533 cctctatgcagagccccatcatggagtgaatggttgtataataaggtattattaaatttg 592 Query: 634 ctttattattgtggtactagtggactagtgaacgaatgcctccttcagcggtattttagc 693 | || |||| || ||| | || | || || |||||| | ||||||||||| || ||| Sbjct: 593 atctactattacgggactcgaggcttggtcaaggaatgcttgcttcagcggtacttcagc 652 Query: 694 acggaagttcgtggtagtggacaagaacctgaatcggaaattgtccaggcctgtagaagt 753 | | |||| |||| ||||| || | | |||||| || ||||| || || ||||||| | Sbjct: 653 aagaaagtgtgtggcagtggtcactatcttgaatcagacattgtacaagcttgtagaaat 712 Query: 754 ttacttgatcagaggcagggtgttaatgtatgtcgattccttaaagcaataaacgagagg 813 || |||||| |||||||||||| ||| | || || || ||| | | ||||| |||||| Sbjct: 713 ttgcttgatgagaggcagggtgaaaatatctggcggtttcttcactcgataaatgagagg 772 Query: 814 catgacataactgaagcactgaagaagctccggtgccggacgctgattttcgtgggagag 873 |||||| |||| || ||| ||| |||||| | ||| || || ||||||||||| ||||| Sbjct: 773 catgacttaacagatgcattgaggaagctgcagtgtcgaacactgattttcgtaggagaa 832 Query: 874 aactcacagtttcatgccgacgctgtccacatgaccacgaaactagatcggagatactgc 933 ||||| || || |||| || || ||||||||||||| || | || |||||| || Sbjct: 833 aactcgcaattccatgaggatgccatccacatgaccacaaagttggacaagagatattgt 892 Query: 934 gccctagtcgaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatg 993 || ||||| |||||||||| || || || || || ||||||||||||||||| || ||| Sbjct: 893 gctctagttgaggttcagggttgtggctcccttgtaaccgaggagcagccacatgctatg 952 Query: 994 ctgatcccgatggagtacttcttgatgggatacgggctctacagaccgtcccagctcgag 1053 ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| | | Sbjct: 953 ctgatgccgatggagtacttcctcatgggatacgggctttacagaccgtaccagatgaac 1012 Query: 1054 agcagcccccgcagcaccctgaacccgttctgcatatcgccggagctgctgtcgcccgag 1113 |||||||| ||||| | || | || | || ||||| |||||| |||| || || ||| Sbjct: 1013 agcagccctcgcagtccgctaagtccatgttgtatatcaccggagttgctatctcctgag 1072 Query: 1114 agcatgggggtgaagctgaagcccatcaagactcg 1148 |||||||| |||||||||||||| ||||||||||| Sbjct: 1073 agcatgggagtgaagctgaagccgatcaagactcg 1107 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 124 atgggggactcgagcgggtcgg 145 |||||||||||||||||||||| Sbjct: 65 atgggggactcgagcgggtcgg 86
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 236 bits (119), Expect = 2e-58 Identities = 197/223 (88%) Strand = Plus / Minus Query: 944 aggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccga 1003 ||||||||||||||||||| || |||||||||||||| || ||||| ||| ||||||| | Sbjct: 4981740 aggttcaggcatgcgggtcactcgtcaccgaggagcaaccgcacgcgatgttgatcccca 4981681 Query: 1004 tggagtacttcttgatgggatacgggctctacagaccgtcccagctcgagagcagccccc 1063 ||||||||||| | |||||||| |||||||||||||| |||||||| || |||||||||| Sbjct: 4981680 tggagtacttcctcatgggatatgggctctacagaccttcccagctggatagcagccccc 4981621 Query: 1064 gcagcaccctgaacccgttctgcatatcgccggagctgctgtcgcccgagagcatggggg 1123 | ||||| |||||||| ||||| |||||||| || || ||||| || ||||||||||| | Sbjct: 4981620 ggagcacactgaacccattctgtatatcgcctgaacttctgtcaccggagagcatgggag 4981561 Query: 1124 tgaagctgaagcccatcaagactcggacctccctcaatgttta 1166 ||||||||||||||||||||||||||| ||| ||||| ||||| Sbjct: 4981560 tgaagctgaagcccatcaagactcggatctcgctcaaagttta 4981518 Score = 127 bits (64), Expect = 1e-25 Identities = 88/96 (91%) Strand = Plus / Minus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 4983143 atgtcttgctttcaaggattgttcttctgcccagaggccgcgtcgctgttgcttcacaat 4983084 Query: 346 ttttgtatctaccatattactcctcaaggccatgag 381 |||||||| ||||| || ||||||||||| |||||| Sbjct: 4983083 ttttgtatttaccacatcactcctcaaggtcatgag 4983048 Score = 117 bits (59), Expect = 1e-22 Identities = 101/115 (87%) Strand = Plus / Minus Query: 833 tgaagaagctccggtgccggacgctgattttcgtgggagagaactcacagtttcatgccg 892 |||||||||| | ||| ||||| |||||||| |||||||||||||||||||| || | || Sbjct: 4981953 tgaagaagcttcagtgtcggacactgatttttgtgggagagaactcacagttccacgacg 4981894 Query: 893 acgctgtccacatgaccacgaaactagatcggagatactgcgccctagtcgaggt 947 |||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 4981893 acgcagtccatatgaccacaaagctagaccggagatattgcgccctagtcgaggt 4981839 Score = 107 bits (54), Expect = 1e-19 Identities = 60/62 (96%) Strand = Plus / Minus Query: 123 catgggggactcgagcgggtcggtgtccatcgacgtggagcggatctacttcggcggcaa 182 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 4984043 catgggggactcgagccggtcggtgtccatcgacgtggagcggatctccttcggcggcaa 4983984 Query: 183 gg 184 || Sbjct: 4983983 gg 4983982 Score = 77.8 bits (39), Expect = 1e-10 Identities = 75/87 (86%) Strand = Plus / Minus Query: 197 gaacaagatacggccctgtatctgtatccgtgtacggagacgaagacaagccagcgctca 256 |||| ||||| ||| |||||||||| || || | ||||| ||||||||||| ||||||| Sbjct: 4983328 gaaccagatatggctctgtatctgtttctgtatttggagatgaagacaagccggcgctca 4983269 Query: 257 taacgtacccggatgtagctctgaatt 283 |||| ||||||||||||||||| |||| Sbjct: 4983268 taacatacccggatgtagctctaaatt 4983242 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 472 ttagggtctgtgatgtgcatgggtgtcaccgccggtgcctacgtgcttaccctctttgca 531 ||||| ||||||||||| |||||||||| |||||||||||| | || |||||||||||| Sbjct: 4982766 ttaggatctgtgatgtgtttgggtgtcactgccggtgcctacattctcaccctctttgca 4982707 Query: 532 g 532 | Sbjct: 4982706 g 4982706 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Minus Query: 554 ttggcctgatgttggtttcacctctatgcaaagccccatcttggagtgagtggttgtata 613 ||||||| ||| | ||||| || |||||||||||||| |||||||| ||||||||||| | Sbjct: 4982597 ttggccttatgctagtttcgccgctatgcaaagccccttcttggagcgagtggttgtaca 4982538 Query: 614 acaaggta 621 | |||||| Sbjct: 4982537 ataaggta 4982530 Score = 63.9 bits (32), Expect = 2e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 380 agttgggagcagctccgattccatcggatgtacctgagctatctgttgataatctcgcgg 439 |||||||||| ||||| ||| |||| ||||| || | || |||||||||| | || | || Sbjct: 4982952 agttgggagcggctccaatttcatccgatgtgcccgtgccatctgttgatgagcttgtgg 4982893 Query: 440 atcaggtcgcggacgttcttgatttctt 467 |||| |||||||| |||||||||||||| Sbjct: 4982892 atcaagtcgcggatgttcttgatttctt 4982865 Score = 60.0 bits (30), Expect = 2e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 696 ggaagttcgtggtagtggacaagaacctgaatcggaaattgtccaggcctgtagaagt 753 |||||||||||| | ||||||||| |||||||| || ||||| || |||||||||||| Sbjct: 4982285 ggaagttcgtgggaatggacaagaccctgaatcagagattgtgcaagcctgtagaagt 4982228 Score = 58.0 bits (29), Expect = 1e-04 Identities = 68/81 (83%) Strand = Plus / Minus Query: 617 aggtattgctaaacttactttattattgtggtactagtggactagtgaacgaatgcctcc 676 ||||||| ||||||| ||||| |||| ||| | | |||| ||||| || |||||| | | Sbjct: 4982452 aggtattattaaacttgctttactattatgggagtcgtgggctagtcaaggaatgcttgc 4982393 Query: 677 ttcagcggtattttagcacgg 697 ||||||||||||||||||||| Sbjct: 4982392 ttcagcggtattttagcacgg 4982372 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1296 ggcacgcacgcacgcatgcat 1316 ||||||||||||||||||||| Sbjct: 39164083 ggcacgcacgcacgcatgcat 39164063
>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671B11 Length = 168372 Score = 236 bits (119), Expect = 2e-58 Identities = 197/223 (88%) Strand = Plus / Minus Query: 944 aggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccga 1003 ||||||||||||||||||| || |||||||||||||| || ||||| ||| ||||||| | Sbjct: 82193 aggttcaggcatgcgggtcactcgtcaccgaggagcaaccgcacgcgatgttgatcccca 82134 Query: 1004 tggagtacttcttgatgggatacgggctctacagaccgtcccagctcgagagcagccccc 1063 ||||||||||| | |||||||| |||||||||||||| |||||||| || |||||||||| Sbjct: 82133 tggagtacttcctcatgggatatgggctctacagaccttcccagctggatagcagccccc 82074 Query: 1064 gcagcaccctgaacccgttctgcatatcgccggagctgctgtcgcccgagagcatggggg 1123 | ||||| |||||||| ||||| |||||||| || || ||||| || ||||||||||| | Sbjct: 82073 ggagcacactgaacccattctgtatatcgcctgaacttctgtcaccggagagcatgggag 82014 Query: 1124 tgaagctgaagcccatcaagactcggacctccctcaatgttta 1166 ||||||||||||||||||||||||||| ||| ||||| ||||| Sbjct: 82013 tgaagctgaagcccatcaagactcggatctcgctcaaagttta 81971 Score = 127 bits (64), Expect = 1e-25 Identities = 88/96 (91%) Strand = Plus / Minus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 83596 atgtcttgctttcaaggattgttcttctgcccagaggccgcgtcgctgttgcttcacaat 83537 Query: 346 ttttgtatctaccatattactcctcaaggccatgag 381 |||||||| ||||| || ||||||||||| |||||| Sbjct: 83536 ttttgtatttaccacatcactcctcaaggtcatgag 83501 Score = 117 bits (59), Expect = 1e-22 Identities = 101/115 (87%) Strand = Plus / Minus Query: 833 tgaagaagctccggtgccggacgctgattttcgtgggagagaactcacagtttcatgccg 892 |||||||||| | ||| ||||| |||||||| |||||||||||||||||||| || | || Sbjct: 82406 tgaagaagcttcagtgtcggacactgatttttgtgggagagaactcacagttccacgacg 82347 Query: 893 acgctgtccacatgaccacgaaactagatcggagatactgcgccctagtcgaggt 947 |||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 82346 acgcagtccatatgaccacaaagctagaccggagatattgcgccctagtcgaggt 82292 Score = 107 bits (54), Expect = 1e-19 Identities = 60/62 (96%) Strand = Plus / Minus Query: 123 catgggggactcgagcgggtcggtgtccatcgacgtggagcggatctacttcggcggcaa 182 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 84496 catgggggactcgagccggtcggtgtccatcgacgtggagcggatctccttcggcggcaa 84437 Query: 183 gg 184 || Sbjct: 84436 gg 84435 Score = 77.8 bits (39), Expect = 1e-10 Identities = 75/87 (86%) Strand = Plus / Minus Query: 197 gaacaagatacggccctgtatctgtatccgtgtacggagacgaagacaagccagcgctca 256 |||| ||||| ||| |||||||||| || || | ||||| ||||||||||| ||||||| Sbjct: 83781 gaaccagatatggctctgtatctgtttctgtatttggagatgaagacaagccggcgctca 83722 Query: 257 taacgtacccggatgtagctctgaatt 283 |||| ||||||||||||||||| |||| Sbjct: 83721 taacatacccggatgtagctctaaatt 83695 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 472 ttagggtctgtgatgtgcatgggtgtcaccgccggtgcctacgtgcttaccctctttgca 531 ||||| ||||||||||| |||||||||| |||||||||||| | || |||||||||||| Sbjct: 83219 ttaggatctgtgatgtgtttgggtgtcactgccggtgcctacattctcaccctctttgca 83160 Query: 532 g 532 | Sbjct: 83159 g 83159 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Minus Query: 554 ttggcctgatgttggtttcacctctatgcaaagccccatcttggagtgagtggttgtata 613 ||||||| ||| | ||||| || |||||||||||||| |||||||| ||||||||||| | Sbjct: 83050 ttggccttatgctagtttcgccgctatgcaaagccccttcttggagcgagtggttgtaca 82991 Query: 614 acaaggta 621 | |||||| Sbjct: 82990 ataaggta 82983 Score = 63.9 bits (32), Expect = 2e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 380 agttgggagcagctccgattccatcggatgtacctgagctatctgttgataatctcgcgg 439 |||||||||| ||||| ||| |||| ||||| || | || |||||||||| | || | || Sbjct: 83405 agttgggagcggctccaatttcatccgatgtgcccgtgccatctgttgatgagcttgtgg 83346 Query: 440 atcaggtcgcggacgttcttgatttctt 467 |||| |||||||| |||||||||||||| Sbjct: 83345 atcaagtcgcggatgttcttgatttctt 83318 Score = 60.0 bits (30), Expect = 2e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 696 ggaagttcgtggtagtggacaagaacctgaatcggaaattgtccaggcctgtagaagt 753 |||||||||||| | ||||||||| |||||||| || ||||| || |||||||||||| Sbjct: 82738 ggaagttcgtgggaatggacaagaccctgaatcagagattgtgcaagcctgtagaagt 82681 Score = 58.0 bits (29), Expect = 1e-04 Identities = 68/81 (83%) Strand = Plus / Minus Query: 617 aggtattgctaaacttactttattattgtggtactagtggactagtgaacgaatgcctcc 676 ||||||| ||||||| ||||| |||| ||| | | |||| ||||| || |||||| | | Sbjct: 82905 aggtattattaaacttgctttactattatgggagtcgtgggctagtcaaggaatgcttgc 82846 Query: 677 ttcagcggtattttagcacgg 697 ||||||||||||||||||||| Sbjct: 82845 ttcagcggtattttagcacgg 82825
>ref|NM_001061400.1| Oryza sativa (japonica cultivar-group) Os05g0196200 (Os05g0196200) mRNA, complete cds Length = 1089 Score = 226 bits (114), Expect = 2e-55 Identities = 381/470 (81%) Strand = Plus / Plus Query: 154 gacgtggagcggatctacttcggcggcaaggagcatcctgtgagaacaagatacggccct 213 ||||| |||||||| | |||||||||||||||||||| ||||| || |||| ||| | Sbjct: 49 gacgtcgagcggatttccttcggcggcaaggagcatcaagtgaggacgagatgcggttca 108 Query: 214 gtatctgtatccgtgtacggagacgaagacaagccagcgctcataacgtacccggatgta 273 |||| || | | ||||||||||| |||||||| |||||||| ||||||||||| | Sbjct: 109 ttatccgtcgcgatatacggagacgaggacaagccggcgctcatcacgtacccggacatc 168 Query: 274 gctctgaattacatgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctg 333 || |||| ||||||||||||||||||||||| | || ||||| |||| ||||| ||| Sbjct: 169 gcgttgaaccacatgtcctgcttccaaggattgctgttttgccccgaggtggcgtcgctg 228 Query: 334 ttgcttcacaatttttgtatctaccatattactcctcaaggccatgagttgggagcagct 393 |||| |||||||| || || ||||| || | |||||| || || ||| | ||||| ||| Sbjct: 229 ctgctccacaatttctgcatataccacataaatcctcaggggcacgagctaggagcggct 288 Query: 394 ccgattccatcggatgtacctgagctatctgttgataatctcgcggatcaggtcgcggac 453 || |||||||| ||||| || | || |||||| || ||||||| |||||||| ||||| Sbjct: 289 ccaattccatccgatgtgccggtgccatctgtagaggatctcgccgatcaggttgcggat 348 Query: 454 gttcttgatttctttggtttagggtctgtgatgtgcatgggtgtcaccgccggtgcctac 513 || || |||||||| || ||||| |||||||||||| ||||||| || || |||||||| Sbjct: 349 gtgctcgatttcttcggattaggatctgtgatgtgcctgggtgttacagctggtgcctat 408 Query: 514 gtgcttaccctctttgcagcaaagtacagggaaagggttcttggcctgatgttggtttca 573 || || || || |||||| | || ||| |||| ||||| | ||| ||||||||||||| Sbjct: 409 gtcctcactctgtttgcaacgaaataccgggagagggtaataggcttgatgttggtttcc 468 Query: 574 cctctatgcaaagccccatcttggagtgagtggttgtataacaaggtatt 623 |||||||||| ||||||||| |||||||| ||||||||||| |||||||| Sbjct: 469 cctctatgcagagccccatcatggagtgaatggttgtataataaggtatt 518 Score = 141 bits (71), Expect = 8e-30 Identities = 272/339 (80%) Strand = Plus / Plus Query: 810 gaggcatgacataactgaagcactgaagaagctccggtgccggacgctgattttcgtggg 869 |||||||||| |||| || ||| ||| |||||| | ||| || || ||||||||||| || Sbjct: 732 gaggcatgacttaacagatgcattgaggaagctgcagtgtcgaacactgattttcgtagg 791 Query: 870 agagaactcacagtttcatgccgacgctgtccacatgaccacgaaactagatcggagata 929 ||| ||||| || || |||| || || ||||||||||||| || | || |||||| Sbjct: 792 agaaaactcgcaattccatgaggatgccatccacatgaccacaaagttggacaagagata 851 Query: 930 ctgcgccctagtcgaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgc 989 || || ||||| |||||||||| || || || || || ||||||||||||||||| || Sbjct: 852 ttgtgctctagttgaggttcagggttgtggctcccttgtaaccgaggagcagccacatgc 911 Query: 990 aatgctgatcccgatggagtacttcttgatgggatacgggctctacagaccgtcccagct 1049 |||||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| | Sbjct: 912 tatgctgatgccgatggagtacttcctcatgggatacgggctttacagaccgtaccagat 971 Query: 1050 cgagagcagcccccgcagcaccctgaacccgttctgcatatcgccggagctgctgtcgcc 1109 | |||||||| ||||| | || | || | || ||||| |||||| |||| || || Sbjct: 972 gaacagcagccctcgcagtccgctaagtccatgttgtatatcaccggagttgctatctcc 1031 Query: 1110 cgagagcatgggggtgaagctgaagcccatcaagactcg 1148 ||||||||||| |||||||||||||| ||||||||||| Sbjct: 1032 tgagagcatgggagtgaagctgaagccgatcaagactcg 1070 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 124 atgggggactcgagcgggtcgg 145 |||||||||||||||||||||| Sbjct: 1 atgggggactcgagcgggtcgg 22
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 125 bits (63), Expect = 5e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 970 accgaggagcagccacacgcaatgctgatcccgatggagtacttcttgatgggatacggg 1029 ||||||||||||||||| || |||||||| ||||||||||||||| | |||||||||||| Sbjct: 39436 accgaggagcagccacatgctatgctgatgccgatggagtacttcctcatgggatacggg 39377 Query: 1030 ctctacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgttctgcata 1089 || |||||||||| |||| | | |||||||| ||||| | || | || | || ||| Sbjct: 39376 ctttacagaccgtaccagatgaacagcagccctcgcagtccgctaagtccatgttgtata 39317 Query: 1090 tcgccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaagactcg 1148 || |||||| |||| || || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 39316 tcaccggagttgctatctcctgagagcatgggagtgaagctgaagccgatcaagactcg 39258 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Minus Query: 560 tgatgttggtttcacctctatgcaaagccccatcttggagtgagtggttgtataacaagg 619 ||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| |||| Sbjct: 40286 tgatgttggtttcccctctatgcagagccccatcatggagtgaatggttgtataataagg 40227 Query: 620 ta 621 || Sbjct: 40226 ta 40225 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 229 tacggagacgaagacaagccagcgctcataacgtacccgga 269 ||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 41015 tacggagacgaggacaagccggcgctcatcacgtacccgga 40975 Score = 56.0 bits (28), Expect = 4e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 284 acatgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcaca 343 ||||||||||||||||||||||| | || ||||| |||| ||||| ||| |||| |||| Sbjct: 40862 acatgtcctgcttccaaggattgctgttttgccccgaggtggcgtcgctgctgctccaca 40803 Query: 344 attt 347 |||| Sbjct: 40802 attt 40799 Score = 44.1 bits (22), Expect = 1.5 Identities = 82/102 (80%) Strand = Plus / Minus Query: 810 gaggcatgacataactgaagcactgaagaagctccggtgccggacgctgattttcgtggg 869 |||||||||| |||| || ||| ||| |||||| | ||| || || ||||||||||| || Sbjct: 39688 gaggcatgacttaacagatgcattgaggaagctgcagtgtcgaacactgattttcgtagg 39629 Query: 870 agagaactcacagtttcatgccgacgctgtccacatgaccac 911 ||| ||||| || || |||| || || ||||||||||||| Sbjct: 39628 agaaaactcgcaattccatgaggatgccatccacatgaccac 39587 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 atgggggactcgagcgggtcgg 145 |||||||||||||||||||||| Sbjct: 41717 atgggggactcgagcgggtcgg 41696 Score = 42.1 bits (21), Expect = 5.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 472 ttagggtctgtgatgtgcatgggtgtcaccgccggtgccta 512 ||||| |||||||||||| ||||||| || || |||||||| Sbjct: 40462 ttaggatctgtgatgtgcctgggtgttacagctggtgccta 40422
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 125 bits (63), Expect = 5e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 970 accgaggagcagccacacgcaatgctgatcccgatggagtacttcttgatgggatacggg 1029 ||||||||||||||||| || |||||||| ||||||||||||||| | |||||||||||| Sbjct: 5832672 accgaggagcagccacatgctatgctgatgccgatggagtacttcctcatgggatacggg 5832613 Query: 1030 ctctacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgttctgcata 1089 || |||||||||| |||| | | |||||||| ||||| | || | || | || ||| Sbjct: 5832612 ctttacagaccgtaccagatgaacagcagccctcgcagtccgctaagtccatgttgtata 5832553 Query: 1090 tcgccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaagactcg 1148 || |||||| |||| || || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 5832552 tcaccggagttgctatctcctgagagcatgggagtgaagctgaagccgatcaagactcg 5832494 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Minus Query: 560 tgatgttggtttcacctctatgcaaagccccatcttggagtgagtggttgtataacaagg 619 ||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| |||| Sbjct: 5833522 tgatgttggtttcccctctatgcagagccccatcatggagtgaatggttgtataataagg 5833463 Query: 620 ta 621 || Sbjct: 5833462 ta 5833461 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 229 tacggagacgaagacaagccagcgctcataacgtacccgga 269 ||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 5834251 tacggagacgaggacaagccggcgctcatcacgtacccgga 5834211 Score = 56.0 bits (28), Expect = 4e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 284 acatgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcaca 343 ||||||||||||||||||||||| | || ||||| |||| ||||| ||| |||| |||| Sbjct: 5834098 acatgtcctgcttccaaggattgctgttttgccccgaggtggcgtcgctgctgctccaca 5834039 Query: 344 attt 347 |||| Sbjct: 5834038 attt 5834035 Score = 44.1 bits (22), Expect = 1.5 Identities = 82/102 (80%) Strand = Plus / Minus Query: 810 gaggcatgacataactgaagcactgaagaagctccggtgccggacgctgattttcgtggg 869 |||||||||| |||| || ||| ||| |||||| | ||| || || ||||||||||| || Sbjct: 5832924 gaggcatgacttaacagatgcattgaggaagctgcagtgtcgaacactgattttcgtagg 5832865 Query: 870 agagaactcacagtttcatgccgacgctgtccacatgaccac 911 ||| ||||| || || |||| || || ||||||||||||| Sbjct: 5832864 agaaaactcgcaattccatgaggatgccatccacatgaccac 5832823 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 124 atgggggactcgagcgggtcgg 145 |||||||||||||||||||||| Sbjct: 5834953 atgggggactcgagcgggtcgg 5834932 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 cagaggctgcgtccctgttgct 338 |||||||||||||||||||||| Sbjct: 19288689 cagaggctgcgtccctgttgct 19288668 Score = 42.1 bits (21), Expect = 5.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 472 ttagggtctgtgatgtgcatgggtgtcaccgccggtgccta 512 ||||| |||||||||||| ||||||| || || |||||||| Sbjct: 5833698 ttaggatctgtgatgtgcctgggtgttacagctggtgccta 5833658
>gb|AY022934.1| Oryza sativa microsatellite MRG5259 containing (CTC)X9, genomic sequence Length = 227 Score = 107 bits (54), Expect = 1e-19 Identities = 60/62 (96%) Strand = Plus / Minus Query: 123 catgggggactcgagcgggtcggtgtccatcgacgtggagcggatctacttcggcggcaa 182 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct: 74 catgggggactcgagccggtcggtgtccatcgacgtggagcggatctccttcggcggcaa 15 Query: 183 gg 184 || Sbjct: 14 gg 13
>ref|NM_001052871.1| Oryza sativa (japonica cultivar-group) Os02g0224800 (Os02g0224800) mRNA, complete cds Length = 1423 Score = 103 bits (52), Expect = 2e-18 Identities = 208/260 (80%) Strand = Plus / Plus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||||||||||||| |||||||||| || ||||| || |||||||||||||| Sbjct: 259 atgtcttgcttccaaggattgctcttctgccctgaagctgcttcattgttgcttcacaat 318 Query: 346 ttttgtatctaccatattactcctcaaggccatgagttgggagcagctccgattccatcg 405 ||||| || |||||||| | || | ||| ||||||||||| |||||||| ||| | | Sbjct: 319 ttttgcatttaccatatcagccccccaggacatgagttgggggcagctccaatttcgcca 378 Query: 406 gatgtacctgagctatctgttgataatctcgcggatcaggtcgcggacgttcttgatttc 465 ||| ||| | |||||||||| || | || |||||||| || || ||||| |||||| Sbjct: 379 aatgctcctataccatctgttgatgatttggctgatcaggttgcagatgttctcgatttc 438 Query: 466 tttggtttagggtctgtgatgtgcatgggtgtcaccgccggtgcctacgtgcttaccctc 525 ||||| ||||| || || |||||| | ||||||| || ||||| ||| | ||||| ||| Sbjct: 439 tttgggttaggttccgtaatgtgcttaggtgtcagtgcgggtgcttacattcttactctc 498 Query: 526 tttgcagcaaagtacaggga 545 || ||||| ||||| ||||| Sbjct: 499 ttcgcagcgaagtataggga 518 Score = 85.7 bits (43), Expect = 4e-13 Identities = 178/223 (79%) Strand = Plus / Plus Query: 923 ggagatactgcgccctagtcgaggttcaggcatgcgggtcgctggtcaccgaggagcagc 982 |||||||||| || ||||| ||||| || ||||| |||||||| | || |||||||| | Sbjct: 896 ggagatactgtgctctagttgaggtccaagcatgtgggtcgctcataacggaggagcaac 955 Query: 983 cacacgcaatgctgatcccgatggagtacttcttgatgggatacgggctctacagaccgt 1042 ||||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct: 956 cacacgcgatgcttatacccatggagtacttcttcatgggttatggcctgtacagaccaa 1015 Query: 1043 cccagctcgagagcagcccccgcagcaccctgaacccgttctgcatatcgccggagctgc 1102 |||| | || | ||||| |||||| |||| | ||| ||||| ||||| || || || | Sbjct: 1016 gccagttggactgtagcccgcgcagccccctcagcccattctgtatatcacccgatctcc 1075 Query: 1103 tgtcgcccgagagcatgggggtgaagctgaagcccatcaagac 1145 |||| ||||| |||||||| || || || ||||| |||||||| Sbjct: 1076 tgtcacccgaaagcatgggagtaaaactaaagccaatcaagac 1118 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 145 gtgtccatcgacgtggagcggatctacttcggcggcaaggagcatc 190 ||||| |||||||||||||| |||| ||||||||||||||| |||| Sbjct: 118 gtgtcgatcgacgtggagcgcatctccttcggcggcaaggaacatc 163
>dbj|AK066213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056E08, full insert sequence Length = 1430 Score = 103 bits (52), Expect = 2e-18 Identities = 208/260 (80%) Strand = Plus / Plus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||||||||||||| |||||||||| || ||||| || |||||||||||||| Sbjct: 264 atgtcttgcttccaaggattgctcttctgccctgaagctgcttcattgttgcttcacaat 323 Query: 346 ttttgtatctaccatattactcctcaaggccatgagttgggagcagctccgattccatcg 405 ||||| || |||||||| | || | ||| ||||||||||| |||||||| ||| | | Sbjct: 324 ttttgcatttaccatatcagccccccaggacatgagttgggggcagctccaatttcgcca 383 Query: 406 gatgtacctgagctatctgttgataatctcgcggatcaggtcgcggacgttcttgatttc 465 ||| ||| | |||||||||| || | || |||||||| || || ||||| |||||| Sbjct: 384 aatgctcctataccatctgttgatgatttggctgatcaggttgcagatgttctcgatttc 443 Query: 466 tttggtttagggtctgtgatgtgcatgggtgtcaccgccggtgcctacgtgcttaccctc 525 ||||| ||||| || || |||||| | ||||||| || ||||| ||| | ||||| ||| Sbjct: 444 tttgggttaggttccgtaatgtgcttaggtgtcagtgcgggtgcttacattcttactctc 503 Query: 526 tttgcagcaaagtacaggga 545 || ||||| ||||| ||||| Sbjct: 504 ttcgcagcgaagtataggga 523 Score = 85.7 bits (43), Expect = 4e-13 Identities = 178/223 (79%) Strand = Plus / Plus Query: 923 ggagatactgcgccctagtcgaggttcaggcatgcgggtcgctggtcaccgaggagcagc 982 |||||||||| || ||||| ||||| || ||||| |||||||| | || |||||||| | Sbjct: 901 ggagatactgtgctctagttgaggtccaagcatgtgggtcgctcataacggaggagcaac 960 Query: 983 cacacgcaatgctgatcccgatggagtacttcttgatgggatacgggctctacagaccgt 1042 ||||||| ||||| || || |||||||||||||| ||||| || || || |||||||| Sbjct: 961 cacacgcgatgcttatacccatggagtacttcttcatgggttatggcctgtacagaccaa 1020 Query: 1043 cccagctcgagagcagcccccgcagcaccctgaacccgttctgcatatcgccggagctgc 1102 |||| | || | ||||| |||||| |||| | ||| ||||| ||||| || || || | Sbjct: 1021 gccagttggactgtagcccgcgcagccccctcagcccattctgtatatcacccgatctcc 1080 Query: 1103 tgtcgcccgagagcatgggggtgaagctgaagcccatcaagac 1145 |||| ||||| |||||||| || || || ||||| |||||||| Sbjct: 1081 tgtcacccgaaagcatgggagtaaaactaaagccaatcaagac 1123 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 145 gtgtccatcgacgtggagcggatctacttcggcggcaaggagcatc 190 ||||| |||||||||||||| |||| ||||||||||||||| |||| Sbjct: 123 gtgtcgatcgacgtggagcgcatctccttcggcggcaaggaacatc 168
>ref|NM_001064413.1| Oryza sativa (japonica cultivar-group) Os06g0563000 (Os06g0563000) mRNA, complete cds Length = 1436 Score = 81.8 bits (41), Expect = 7e-12 Identities = 140/173 (80%) Strand = Plus / Plus Query: 973 gaggagcagccacacgcaatgctgatcccgatggagtacttcttgatgggatacgggctc 1032 |||||||| || || |||||||| || ||| ||||||||||| | ||||||||||| | Sbjct: 986 gaggagcaaccgcatgcaatgcttatgccgctggagtacttcctcatgggatacggattg 1045 Query: 1033 tacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgttctgcatatcg 1092 |||||||| |||| | ||||||| || ||| || |||||||||| || |||||| Sbjct: 1046 tacagaccaagccagataagctgcagccctcgtagccccttgaacccgttttgtatatcg 1105 Query: 1093 ccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaagac 1145 || || || || |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1106 ccagaactcctctcgcccgagagcatgggggttaagctaaagccaatcaagac 1158 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 154 gacgtggagcggatctacttcggcggcaaggagcatc 190 ||||| ||||| |||| ||||||||||||||| |||| Sbjct: 167 gacgtcgagcgcatctccttcggcggcaaggaacatc 203 Score = 42.1 bits (21), Expect = 5.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 343 aatttttgtatctaccatattactcctcaaggccatgagttgggagcagctcc 395 ||||||||||| |||||||| | || | ||| |||||||| ||||||||||| Sbjct: 356 aatttttgtatttaccatatcagccccccaggacatgagttaggagcagctcc 408
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 81.8 bits (41), Expect = 7e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 973 gaggagcagccacacgcaatgctgatcccgatggagtacttcttgatgggatacgggctc 1032 |||||||| || || |||||||| || ||| ||||||||||| | ||||||||||| | Sbjct: 21290097 gaggagcaaccgcatgcaatgcttatgccgctggagtacttcctcatgggatacggattg 21290038 Query: 1033 tacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgttctgcatatcg 1092 |||||||| |||| | ||||||| || ||| || |||||||||| || |||||| Sbjct: 21290037 tacagaccaagccagataagctgcagccctcgtagccccttgaacccgttttgtatatcg 21289978 Query: 1093 ccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaagac 1145 || || || || |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 21289977 ccagaactcctctcgcccgagagcatgggggttaagctaaagccaatcaagac 21289925
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 81.8 bits (41), Expect = 7e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||||||||||||| |||||||||| || ||||| || |||||||||||||| Sbjct: 7007715 atgtcttgcttccaaggattgctcttctgccctgaagctgcttcattgttgcttcacaat 7007774 Query: 346 ttttgtatctaccatat 362 ||||| || |||||||| Sbjct: 7007775 ttttgcatttaccatat 7007791 Score = 67.9 bits (34), Expect = 1e-07 Identities = 154/194 (79%) Strand = Plus / Plus Query: 952 gcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccgatggagtac 1011 ||||| |||||||| | || |||||||| |||||||| ||||| || || ||||||||| Sbjct: 7009109 gcatgtgggtcgctcataacggaggagcaaccacacgcgatgcttatacccatggagtac 7009168 Query: 1012 ttcttgatgggatacgggctctacagaccgtcccagctcgagagcagcccccgcagcacc 1071 ||||| ||||| || || || |||||||| |||| | || | ||||| |||||| || Sbjct: 7009169 ttcttcatgggttatggcctgtacagaccaagccagttggactgtagcccgcgcagcccc 7009228 Query: 1072 ctgaacccgttctgcatatcgccggagctgctgtcgcccgagagcatgggggtgaagctg 1131 || | ||| ||||| ||||| || || || ||||| ||||| |||||||| || || || Sbjct: 7009229 ctcagcccattctgtatatcacccgatctcctgtcacccgaaagcatgggagtaaaacta 7009288 Query: 1132 aagcccatcaagac 1145 ||||| |||||||| Sbjct: 7009289 aagccaatcaagac 7009302 Score = 56.0 bits (28), Expect = 4e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 145 gtgtccatcgacgtggagcggatctacttcggcggcaagg 184 ||||| |||||||||||||| |||| |||||||||||||| Sbjct: 7005380 gtgtcgatcgacgtggagcgcatctccttcggcggcaagg 7005419
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 81.8 bits (41), Expect = 7e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||||||||||||| |||||||||| || ||||| || |||||||||||||| Sbjct: 11134 atgtcttgcttccaaggattgctcttctgccctgaagctgcttcattgttgcttcacaat 11193 Query: 346 ttttgtatctaccatat 362 ||||| || |||||||| Sbjct: 11194 ttttgcatttaccatat 11210 Score = 67.9 bits (34), Expect = 1e-07 Identities = 154/194 (79%) Strand = Plus / Plus Query: 952 gcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccgatggagtac 1011 ||||| |||||||| | || |||||||| |||||||| ||||| || || ||||||||| Sbjct: 12528 gcatgtgggtcgctcataacggaggagcaaccacacgcgatgcttatacccatggagtac 12587 Query: 1012 ttcttgatgggatacgggctctacagaccgtcccagctcgagagcagcccccgcagcacc 1071 ||||| ||||| || || || |||||||| |||| | || | ||||| |||||| || Sbjct: 12588 ttcttcatgggttatggcctgtacagaccaagccagttggactgtagcccgcgcagcccc 12647 Query: 1072 ctgaacccgttctgcatatcgccggagctgctgtcgcccgagagcatgggggtgaagctg 1131 || | ||| ||||| ||||| || || || ||||| ||||| |||||||| || || || Sbjct: 12648 ctcagcccattctgtatatcacccgatctcctgtcacccgaaagcatgggagtaaaacta 12707 Query: 1132 aagcccatcaagac 1145 ||||| |||||||| Sbjct: 12708 aagccaatcaagac 12721 Score = 56.0 bits (28), Expect = 4e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 145 gtgtccatcgacgtggagcggatctacttcggcggcaagg 184 ||||| |||||||||||||| |||| |||||||||||||| Sbjct: 8799 gtgtcgatcgacgtggagcgcatctccttcggcggcaagg 8838
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 81.8 bits (41), Expect = 7e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| ||||||||||||||| |||||||||| || ||||| || |||||||||||||| Sbjct: 101337 atgtcttgcttccaaggattgctcttctgccctgaagctgcttcattgttgcttcacaat 101396 Query: 346 ttttgtatctaccatat 362 ||||| || |||||||| Sbjct: 101397 ttttgcatttaccatat 101413 Score = 67.9 bits (34), Expect = 1e-07 Identities = 154/194 (79%) Strand = Plus / Plus Query: 952 gcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccgatggagtac 1011 ||||| |||||||| | || |||||||| |||||||| ||||| || || ||||||||| Sbjct: 102731 gcatgtgggtcgctcataacggaggagcaaccacacgcgatgcttatacccatggagtac 102790 Query: 1012 ttcttgatgggatacgggctctacagaccgtcccagctcgagagcagcccccgcagcacc 1071 ||||| ||||| || || || |||||||| |||| | || | ||||| |||||| || Sbjct: 102791 ttcttcatgggttatggcctgtacagaccaagccagttggactgtagcccgcgcagcccc 102850 Query: 1072 ctgaacccgttctgcatatcgccggagctgctgtcgcccgagagcatgggggtgaagctg 1131 || | ||| ||||| ||||| || || || ||||| ||||| |||||||| || || || Sbjct: 102851 ctcagcccattctgtatatcacccgatctcctgtcacccgaaagcatgggagtaaaacta 102910 Query: 1132 aagcccatcaagac 1145 ||||| |||||||| Sbjct: 102911 aagccaatcaagac 102924 Score = 56.0 bits (28), Expect = 4e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 145 gtgtccatcgacgtggagcggatctacttcggcggcaagg 184 ||||| |||||||||||||| |||| |||||||||||||| Sbjct: 99002 gtgtcgatcgacgtggagcgcatctccttcggcggcaagg 99041
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 81.8 bits (41), Expect = 7e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 973 gaggagcagccacacgcaatgctgatcccgatggagtacttcttgatgggatacgggctc 1032 |||||||| || || |||||||| || ||| ||||||||||| | ||||||||||| | Sbjct: 85473 gaggagcaaccgcatgcaatgcttatgccgctggagtacttcctcatgggatacggattg 85414 Query: 1033 tacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgttctgcatatcg 1092 |||||||| |||| | ||||||| || ||| || |||||||||| || |||||| Sbjct: 85413 tacagaccaagccagataagctgcagccctcgtagccccttgaacccgttttgtatatcg 85354 Query: 1093 ccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaagac 1145 || || || || |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 85353 ccagaactcctctcgcccgagagcatgggggttaagctaaagccaatcaagac 85301
>dbj|AK099669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068F20, full insert sequence Length = 1438 Score = 81.8 bits (41), Expect = 7e-12 Identities = 140/173 (80%) Strand = Plus / Plus Query: 973 gaggagcagccacacgcaatgctgatcccgatggagtacttcttgatgggatacgggctc 1032 |||||||| || || |||||||| || ||| ||||||||||| | ||||||||||| | Sbjct: 988 gaggagcaaccgcatgcaatgcttatgccgctggagtacttcctcatgggatacggattg 1047 Query: 1033 tacagaccgtcccagctcgagagcagcccccgcagcaccctgaacccgttctgcatatcg 1092 |||||||| |||| | ||||||| || ||| || |||||||||| || |||||| Sbjct: 1048 tacagaccaagccagataagctgcagccctcgtagccccttgaacccgttttgtatatcg 1107 Query: 1093 ccggagctgctgtcgcccgagagcatgggggtgaagctgaagcccatcaagac 1145 || || || || |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1108 ccagaactcctctcgcccgagagcatgggggttaagctaaagccaatcaagac 1160 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 154 gacgtggagcggatctacttcggcggcaaggagcatc 190 ||||| ||||| |||| ||||||||||||||| |||| Sbjct: 169 gacgtcgagcgcatctccttcggcggcaaggaacatc 205 Score = 42.1 bits (21), Expect = 5.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 343 aatttttgtatctaccatattactcctcaaggccatgagttgggagcagctcc 395 ||||||||||| |||||||| | || | ||| |||||||| ||||||||||| Sbjct: 358 aatttttgtatttaccatatcagccccccaggacatgagttaggagcagctcc 410
>dbj|AK062204.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-G12, full insert sequence Length = 491 Score = 61.9 bits (31), Expect = 6e-06 Identities = 160/203 (78%) Strand = Plus / Plus Query: 943 gaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccg 1002 ||||| || ||||| |||||||| | || |||||||| |||||||| ||||| || || Sbjct: 3 gaggtccaagcatgtgggtcgctcataacggaggagcaaccacacgcgatgcttataccc 62 Query: 1003 atggagtacttcttgatgggatacgggctctacagaccgtcccagctcgagagcagcccc 1062 |||||||||||||| ||||| || | || |||||||| |||| | || | ||||| Sbjct: 63 atggagtacttcttcatgggttatagcctgtacagaccaagccagttggactgtagcccg 122 Query: 1063 cgcagcaccctgaacccgttctgcatatcgccggagctgctgtcgcccgagagcatgggg 1122 |||||| |||| | ||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct: 123 cgcagccccctcagcccattctgtatatcacccgatctcctgtcacccgaaagcatggga 182 Query: 1123 gtgaagctgaagcccatcaagac 1145 || || || ||||| |||||||| Sbjct: 183 gtaaaactaaagccaatcaagac 205
>ref|NM_125058.2| Arabidopsis thaliana unknown protein (AT5G56750) mRNA, complete cds Length = 1460 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 943 gaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccg 1002 ||||||||||| || || || |||| || |||||||| ||||| |||||| ||||||| Sbjct: 929 gaggttcaggcttgtggttcaatggtaacagaggagcaaccacatgcaatgttgatccca 988 Query: 1003 atggagtacttcttgatgggatacgg 1028 ||||| || ||||||||||| ||||| Sbjct: 989 atggaatatttcttgatgggttacgg 1014
>gb|AY090332.1| Arabidopsis thaliana AT5g56750/MIK19_22 mRNA, complete cds Length = 1041 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 943 gaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccg 1002 ||||||||||| || || || |||| || |||||||| ||||| |||||| ||||||| Sbjct: 820 gaggttcaggcttgtggttcaatggtaacagaggagcaaccacatgcaatgttgatccca 879 Query: 1003 atggagtacttcttgatgggatacgg 1028 ||||| || ||||||||||| ||||| Sbjct: 880 atggaatatttcttgatgggttacgg 905
>gb|AY050428.1| Arabidopsis thaliana AT5g56750/MIK19_22 mRNA, complete cds Length = 1458 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 943 gaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccg 1002 ||||||||||| || || || |||| || |||||||| ||||| |||||| ||||||| Sbjct: 929 gaggttcaggcttgtggttcaatggtaacagaggagcaaccacatgcaatgttgatccca 988 Query: 1003 atggagtacttcttgatgggatacgg 1028 ||||| || ||||||||||| ||||| Sbjct: 989 atggaatatttcttgatgggttacgg 1014
>gb|AY087544.1| Arabidopsis thaliana clone 36495 mRNA, complete sequence Length = 1457 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 943 gaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccg 1002 ||||||||||| || || || |||| || |||||||| ||||| |||||| ||||||| Sbjct: 929 gaggttcaggcttgtggttcaatggtaacagaggagcaaccacatgcaatgttgatccca 988 Query: 1003 atggagtacttcttgatgggatacgg 1028 ||||| || ||||||||||| ||||| Sbjct: 989 atggaatatttcttgatgggttacgg 1014
>emb|BX833971.1|CNS09ZC6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1076 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 943 gaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccg 1002 ||||||||||| || || || |||| || |||||||| ||||| |||||| ||||||| Sbjct: 588 gaggttcaggcttgtggttcaatggtaacagaggagcaaccacatgcaatgttgatccca 647 Query: 1003 atggagtacttcttgatgggatacgg 1028 ||||| || ||||||||||| ||||| Sbjct: 648 atggaatatttcttgatgggttacgg 673
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19 Length = 84129 Score = 58.0 bits (29), Expect = 1e-04 Identities = 71/85 (83%) Strand = Plus / Plus Query: 944 aggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccga 1003 |||||||||| || || || |||| || |||||||| ||||| |||||| ||||||| | Sbjct: 58591 aggttcaggcttgtggttcaatggtaacagaggagcaaccacatgcaatgttgatcccaa 58650 Query: 1004 tggagtacttcttgatgggatacgg 1028 |||| || ||||||||||| ||||| Sbjct: 58651 tggaatatttcttgatgggttacgg 58675
>ref|NM_127520.2| Arabidopsis thaliana unknown protein (AT2G19620) mRNA, complete cds Length = 1184 Score = 56.0 bits (28), Expect = 4e-04 Identities = 103/128 (80%) Strand = Plus / Plus Query: 268 gatgtagctctgaattacatgtcctgcttccaaggattgttcttctgcccagaggctgcg 327 |||||||| || || || ||||| || |||||||||||||| | ||||| || || | | Sbjct: 145 gatgtagcactaaactatatgtcttgtttccaaggattgtttctatgccctgaagcagtg 204 Query: 328 tccctgttgcttcacaatttttgtatctaccatattactcctcaaggccatgagttggga 387 ||| | |||| || ||||| || ||||||||||||| ||||| ||| |||||||| ||| Sbjct: 205 tccttactgctccataatttctgcatctaccatattagtcctccaggacatgagtttgga 264 Query: 388 gcagctcc 395 || ||||| Sbjct: 265 gctgctcc 272
>ref|NM_121217.2| Arabidopsis thaliana unknown protein (AT5G11790) mRNA, complete cds Length = 1463 Score = 56.0 bits (28), Expect = 4e-04 Identities = 109/136 (80%) Strand = Plus / Plus Query: 890 ccgacgctgtccacatgaccacgaaactagatcggagatactgcgccctagtcgaggttc 949 |||| ||||| ||||||||||| |||||||| | ||||| | || |||||||||| | Sbjct: 899 ccgaggctgttcacatgaccaccaaactagacagacgatacggtgcattagtcgaggtgc 958 Query: 950 aggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccgatggagt 1009 ||| | |||||||| |||| | ||| || |||||||| || ||| | || || ||||| | Sbjct: 959 agggaagcgggtcgttggtgagcgaagaacagccacaggcgatgataataccaatggaat 1018 Query: 1010 acttcttgatgggata 1025 |||| ||||||||||| Sbjct: 1019 actttttgatgggata 1034
>gb|AF361823.1| Arabidopsis thaliana AT5g11790/T22P22_180 mRNA, complete cds Length = 1459 Score = 56.0 bits (28), Expect = 4e-04 Identities = 109/136 (80%) Strand = Plus / Plus Query: 890 ccgacgctgtccacatgaccacgaaactagatcggagatactgcgccctagtcgaggttc 949 |||| ||||| ||||||||||| |||||||| | ||||| | || |||||||||| | Sbjct: 895 ccgaggctgttcacatgaccaccaaactagacagacgatacggtgcattagtcgaggtgc 954 Query: 950 aggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccgatggagt 1009 ||| | |||||||| |||| | ||| || |||||||| || ||| | || || ||||| | Sbjct: 955 agggaagcgggtcgttggtgagcgaagaacagccacaggcgatgataataccaatggaat 1014 Query: 1010 acttcttgatgggata 1025 |||| ||||||||||| Sbjct: 1015 actttttgatgggata 1030
>gb|AY059161.1| Arabidopsis thaliana AT5g11790/T22P22_180 mRNA, complete cds Length = 1035 Score = 56.0 bits (28), Expect = 4e-04 Identities = 109/136 (80%) Strand = Plus / Plus Query: 890 ccgacgctgtccacatgaccacgaaactagatcggagatactgcgccctagtcgaggttc 949 |||| ||||| ||||||||||| |||||||| | ||||| | || |||||||||| | Sbjct: 767 ccgaggctgttcacatgaccaccaaactagacagacgatacggtgcattagtcgaggtgc 826 Query: 950 aggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgatcccgatggagt 1009 ||| | |||||||| |||| | ||| || |||||||| || ||| | || || ||||| | Sbjct: 827 agggaagcgggtcgttggtgagcgaagaacagccacaggcgatgataataccaatggaat 886 Query: 1010 acttcttgatgggata 1025 |||| ||||||||||| Sbjct: 887 actttttgatgggata 902
>gb|DQ272583.1| Helianthus annuus SF21D2 splice variant protein mRNA, partial cds, alternatively spliced Length = 1058 Score = 56.0 bits (28), Expect = 4e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 932 gcgccctagtcgaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaa 991 ||||| |||||||||| ||||| || || || |||| || || ||||| |||||||||| Sbjct: 624 gcgccttagtcgaggtacaggcgtgtggatcaatggtaacagaagagcaaccacacgcaa 683 Query: 992 tgctgatcccgatggagtacttcttgatgggatacgggct 1031 ||||||| || |||||||| || | ||||| |||||||| Sbjct: 684 tgctgatacctatggagtattttctaatggggtacgggct 723
>gb|DQ272582.1| Helianthus annuus SF21D1 splice variant protein mRNA, partial cds, alternatively spliced Length = 1377 Score = 56.0 bits (28), Expect = 4e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 932 gcgccctagtcgaggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaa 991 ||||| |||||||||| ||||| || || || |||| || || ||||| |||||||||| Sbjct: 624 gcgccttagtcgaggtacaggcgtgtggatcaatggtaacagaagagcaaccacacgcaa 683 Query: 992 tgctgatcccgatggagtacttcttgatgggatacgggct 1031 ||||||| || |||||||| || | ||||| |||||||| Sbjct: 684 tgctgatacctatggagtattttctaatggggtacgggct 723
>gb|AC174302.25| Medicago truncatula clone mth2-96b5, complete sequence Length = 117327 Score = 50.1 bits (25), Expect = 0.024 Identities = 70/85 (82%) Strand = Plus / Plus Query: 286 atgtcctgcttccaaggattgttcttctgcccagaggctgcgtccctgttgcttcacaat 345 ||||| || ||||||||||| || ||||| ||||||||||| || || ||||||| || Sbjct: 111501 atgtcatgtttccaaggattatttttctgtccagaggctgcttctttgctgcttcataac 111560 Query: 346 ttttgtatctaccatattactcctc 370 ||||| || || ||||||| ||||| Sbjct: 111561 ttttgcatatatcatattagtcctc 111585 Score = 46.1 bits (23), Expect = 0.37 Identities = 38/43 (88%) Strand = Plus / Plus Query: 578 tatgcaaagccccatcttggagtgagtggttgtataacaaggt 620 |||||||||| || ||||||| ||| ||||| ||||||||||| Sbjct: 112131 tatgcaaagcaccttcttggactgaatggttttataacaaggt 112173
>gb|AY109355.1| Zea mays CL49_2 mRNA sequence Length = 3374 Score = 48.1 bits (24), Expect = 0.094 Identities = 33/36 (91%) Strand = Plus / Plus Query: 224 ccgtgtacggagacgaagacaagccagcgctcataa 259 ||||||| |||||||| |||||||||||||| |||| Sbjct: 3135 ccgtgtatggagacgaggacaagccagcgcttataa 3170
>gb|AY178337.1| Trifolium repens microsatellite agr1054 sequence Length = 475 Score = 46.1 bits (23), Expect = 0.37 Identities = 47/55 (85%) Strand = Plus / Minus Query: 944 aggttcaggcatgcgggtcgctggtcaccgaggagcagccacacgcaatgctgat 998 |||| ||||| ||||| ||| |||| || ||||| ||||| |||||||||||||| Sbjct: 68 aggtccaggcttgcggatcgatggtgacagaggaacagccccacgcaatgctgat 14
>ref|XM_965770.1| PREDICTED: Tribolium castaneum similar to CG11033-PA (LOC659466), mRNA Length = 3027 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 434 tcgcggatcaggtcgcggacgttctt 459 ||||||||||||||| |||||||||| Sbjct: 1217 tcgcggatcaggtcggggacgttctt 1192
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 cagaggctgcgtccctgttgct 338 |||||||||||||||||||||| Sbjct: 92764 cagaggctgcgtccctgttgct 92743
>gb|BT014147.1| Lycopersicon esculentum clone 133266F, mRNA sequence Length = 1399 Score = 44.1 bits (22), Expect = 1.5 Identities = 58/70 (82%) Strand = Plus / Plus Query: 241 gacaagccagcgctcataacgtacccggatgtagctctgaattacatgtcctgcttccaa 300 |||||||| || || || || ||||| ||| ||||| | ||||| |||||||| |||||| Sbjct: 209 gacaagccggctcttatcacctaccctgatttagctttaaattatatgtcctgtttccaa 268 Query: 301 ggattgttct 310 ||||| |||| Sbjct: 269 ggattattct 278
>gb|AC107978.2| Homo sapiens chromosome 15, clone CTD-2631G16, complete sequence Length = 69329 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 tgagaggaagcttctggaagcc 120 |||||||||||||||||||||| Sbjct: 28647 tgagaggaagcttctggaagcc 28668
>gb|AC016180.14| Homo sapiens chromosome , clone RP11-553E24, complete sequence Length = 184735 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 tgagaggaagcttctggaagcc 120 |||||||||||||||||||||| Sbjct: 4345 tgagaggaagcttctggaagcc 4324
>gb|DQ066316.1| Ixodes scapularis isolate IS-6-12L-293 ribosomal protein L36 mRNA, complete cds Length = 333 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 433 ctcgcggatcaggtcgcggacg 454 |||||||||||||||||||||| Sbjct: 138 ctcgcggatcaggtcgcggacg 117
>emb|BX819784.1|CNS0A856 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS27ZB11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1349 Score = 44.1 bits (22), Expect = 1.5 Identities = 91/114 (79%) Strand = Plus / Plus Query: 268 gatgtagctctgaattacatgtcctgcttccaaggattgttcttctgcccagaggctgcg 327 |||||||| || || || ||||| || |||||||||||||| | ||||| || || | | Sbjct: 191 gatgtagcactaaactatatgtcttgtttccaaggattgtttctatgccctgaagcagtg 250 Query: 328 tccctgttgcttcacaatttttgtatctaccatattactcctcaaggccatgag 381 ||| | |||| || ||||| || ||||||||||||| ||||| ||| |||||| Sbjct: 251 tccttactgctccataatttctgcatctaccatattagtcctccaggacatgag 304
>emb|AL731552.11| Mouse DNA sequence from clone RP23-113K24 on chromosome 2, complete sequence Length = 203304 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 aggagcatcctgtgagaacaag 203 |||||||||||||||||||||| Sbjct: 56580 aggagcatcctgtgagaacaag 56601
>gb|AC186296.2| Mus musculus chromosome 5, clone wi1-979J3, complete sequence Length = 35640 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1295 tggcacgcacgcacgcatgca 1315 ||||||||||||||||||||| Sbjct: 20353 tggcacgcacgcacgcatgca 20373
>emb|CT485609.15| Mouse DNA sequence from clone RP23-74C21 on chromosome 17, complete sequence Length = 219732 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 91750 gcacgcacgcacgcatgcata 91730
>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence Length = 199737 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 147636 gcacgcacgcacgcatgcata 147656
>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0023M11, complete sequence Length = 120228 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 54748 gcacgcacgcacgcatgcata 54728
>gb|AC120135.7| Mus musculus chromosome 7, clone RP23-64O4, complete sequence Length = 220872 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 540 cagggaaagggttcttggcctgatg 564 ||||| ||||||||||||||||||| Sbjct: 65710 cagggcaagggttcttggcctgatg 65734
>gb|AC120413.20| Mus musculus chromosome 5, clone RP24-458L16, complete sequence Length = 163011 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1295 tggcacgcacgcacgcatgca 1315 ||||||||||||||||||||| Sbjct: 12878 tggcacgcacgcacgcatgca 12858
>gb|AC133978.2| Rattus norvegicus 2 BAC CH230-10K1 (Children's Hospital Oakland Research Institute) complete sequence Length = 213704 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 13328 gcacgcacgcacgcatgcata 13308
>gb|AC158749.5| Mus musculus chromosome 7, clone RP23-285C18, complete sequence Length = 237364 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 98373 gcacgcacgcacgcatgcata 98353
>emb|AL929389.9| Zebrafish DNA sequence from clone CH211-51H4 in linkage group 11, complete sequence Length = 166353 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 96338 gcacgcacgcacgcatgcata 96358
>gb|AC107396.5| Homo sapiens BAC clone RP11-685F15 from 4, complete sequence Length = 44722 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 tgcttccaaggattgttcttc 312 ||||||||||||||||||||| Sbjct: 33717 tgcttccaaggattgttcttc 33737
>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence Length = 138668 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 133416 gcacgcacgcacgcatgcata 133396
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 10213195 gcacgcacgcacgcatgcata 10213175
>emb|CR392025.7| Zebrafish DNA sequence from clone CH211-248P17 in linkage group 17, complete sequence Length = 158863 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1297 gcacgcacgcacgcatgcatagatt 1321 ||||||||||||||| ||||||||| Sbjct: 136687 gcacgcacgcacgcacgcatagatt 136711
>emb|AL355612.8| Human DNA sequence from clone RP11-343P23 on chromosome 6, complete sequence Length = 164374 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 gtctgtgatgtgcatgggtgt 497 ||||||||||||||||||||| Sbjct: 10883 gtctgtgatgtgcatgggtgt 10863
>gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosome 16, complete sequence Length = 143881 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 612 taacaaggtattgctaaactt 632 ||||||||||||||||||||| Sbjct: 115177 taacaaggtattgctaaactt 115197
>gb|S44755.1|S44757S2 red and green visual pigment {5' region} [cattle, Genomic, 415 nt, segment 2 of 2] Length = 415 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1054 agcagcccccgcagcaccctg 1074 ||||||||||||||||||||| Sbjct: 143 agcagcccccgcagcaccctg 163
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 ggatcaggtcgcggacgttct 458 ||||||||||||||||||||| Sbjct: 114499 ggatcaggtcgcggacgttct 114479
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 ctacttcggcggcaaggagca 188 ||||||||||||||||||||| Sbjct: 2174991 ctacttcggcggcaaggagca 2175011
>emb|AL670322.1|TB13J3 Trypanosoma brucei Bn-2 VSG expression site BAC 13J3 Length = 58506 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 795 taaagcaataaacgagaggca 815 ||||||||||||||||||||| Sbjct: 29626 taaagcaataaacgagaggca 29646
>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0035F12 Length = 153439 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1296 ggcacgcacgcacgcatgcat 1316 ||||||||||||||||||||| Sbjct: 39843 ggcacgcacgcacgcatgcat 39823
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 tctcgcggatcaggtcgcgga 452 ||||||||||||||||||||| Sbjct: 3588191 tctcgcggatcaggtcgcgga 3588211
>ref|XM_310720.2| Anopheles gambiae str. PEST ENSANGP00000007489 (ENSANGG00000005655), partial mRNA Length = 1743 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1096 gagctgctgtcgcccgagagc 1116 ||||||||||||||||||||| Sbjct: 85 gagctgctgtcgcccgagagc 105
>ref|NM_208621.1| Eremothecium gossypii ACL136Wp (ACL136W), mRNA Length = 1341 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 ggatcaggtcgcggacgttct 458 ||||||||||||||||||||| Sbjct: 1033 ggatcaggtcgcggacgttct 1013
>gb|AC133202.3| Mus musculus BAC clone RP23-83P19 from 8, complete sequence Length = 150932 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1296 ggcacgcacgcacgcatgcat 1316 ||||||||||||||||||||| Sbjct: 96475 ggcacgcacgcacgcatgcat 96495
>gb|AC164983.2| Mus musculus BAC clone RP23-16J24 from chromosome 17, complete sequence Length = 224370 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1297 gcacgcacgcacgcatgcata 1317 ||||||||||||||||||||| Sbjct: 215727 gcacgcacgcacgcatgcata 215747 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 224,201,885 Number of extensions: 11976608 Number of successful extensions: 298823 Number of sequences better than 10.0: 67 Number of HSP's gapped: 298815 Number of HSP's successfully gapped: 133 Length of query: 1519 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1496 Effective length of database: 18,503,978,556 Effective search space: 27681951919776 Effective search space used: 27681951919776 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)