ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf116j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O60346:PHLPP_HUMAN PH domain leucine-rich repeat-containing prot... 37 0.13
2Q8IVL6:P3H3_HUMAN Prolyl 3-hydroxylase 3 precursor - Homo sapien... 32 3.2
3P29091:BGLS_SCHCO Beta-glucosidase - Schizophyllum commune (Brac... 32 5.4
4Q14957:NMDE3_HUMAN Glutamate [NMDA] receptor subunit epsilon-3 p... 31 7.1
5P01133:EGF_HUMAN Pro-epidermal growth factor precursor - Homo sa... 31 7.1
6Q4R739:ANR53_MACFA Ankyrin repeat domain-containing protein 53 -... 31 7.1
7Q8VCX2:S35C2_MOUSE Solute carrier family 35 member C2 - Mus musc... 31 9.2
8Q6AHF1:HEM3_LEIXX Porphobilinogen deaminase - Leifsonia xyli sub... 31 9.2
9Q00911:EGR4_RAT Early growth response protein 4 - Rattus norvegi... 31 9.2

>O60346:PHLPP_HUMAN PH domain leucine-rich repeat-containing protein phosphatase - Homo|
           sapiens (Human)
          Length = 1717
 Score = 37.0 bits (84), Expect = 0.13
 Identities = 28/84 (33%), Positives = 39/84 (46%)
 Frame = -3

Query: 432 PKVVPSETGTILDGSWPEHGALEAALWSCATQSTPRRLASRGTLKAPVPSRPPTALLSYS 253
           P+ + S  G + +GS  E  A  AA+     QSTP R       KAP P  PPT  +   
Sbjct: 420 PRAIDSPGGAVREGSCEEKAA--AAVAPGGLQSTPGRSGVTAE-KAPPPPPPPTLYVQLH 476

Query: 252 PWTFLHLIAT*RPLKASSAFMFFL 181
             T   L A  +PL+  + ++F L
Sbjct: 477 GETTRRLEAEEKPLQIQNDYLFQL 500



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>Q8IVL6:P3H3_HUMAN Prolyl 3-hydroxylase 3 precursor - Homo sapiens (Human)|
          Length = 736

 Score = 32.3 bits (72), Expect = 3.2
 Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
 Frame = -3

Query: 492 MDWHSGDAADGVAMLSPATMPKVVPSETGTILDGSWPEHGALEAALW--SCATQSTPRRL 319
           +D  +  AAD  A L    +    P        GSW E   L AAL    C TQ   RRL
Sbjct: 75  LDCGASCAADPGAALPAVLLGAPEPDSGPGPTQGSW-ERQLLRAALRRADCLTQCAARRL 133

Query: 318 ASRGTLKAPVPSRPPTALLSYSPWTFL---HLIAT*RPLKASSAFMFFLVQSAHL 163
              G  +  V S    A     P+ +L   +       L A++A  FF+    HL
Sbjct: 134 GPGGAARLRVGSALRDAFRRREPYNYLQRAYYQLKKLDLAAAAAHTFFVANPMHL 188



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>P29091:BGLS_SCHCO Beta-glucosidase - Schizophyllum commune (Bracket fungus)|
          Length = 192

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 495 VMDWHSGDAADGVAMLSPATMPKVVPSET-GTILDGSWPEHGALEAALWS 349
           ++ WH GDA   V  ++ A    +V   T G I+  +W EH  ++A +WS
Sbjct: 70  LLAWHDGDAL--VQAVADANENTIVAVNTVGAIITEAWIEHPNVKAVVWS 117



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>Q14957:NMDE3_HUMAN Glutamate [NMDA] receptor subunit epsilon-3 precursor - Homo sapiens|
            (Human)
          Length = 1233

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -2

Query: 187  LPGAVGTLGQTYDDGRRLGVGDGHRQKHGEDQCSRRSR 74
            L GA G LG     GR LG+G G+R   G D+ SR +R
Sbjct: 1178 LSGAWGPLGHR---GRTLGLGTGYRDSGGLDEISRVAR 1212



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>P01133:EGF_HUMAN Pro-epidermal growth factor precursor - Homo sapiens (Human)|
          Length = 1207

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 233  KCKNVHGEYESKAVGGLDGTGAFSVPLDANLRGVDCVAQLHSAASNAPCSGQE 391
            KC N  G Y  +   G  G G   + +D      +C   +HS   NA C+  E
Sbjct: 887  KCINTEGGYVCRCSEGYQGDGIHCLDID------ECQLGVHSCGENASCTNTE 933



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>Q4R739:ANR53_MACFA Ankyrin repeat domain-containing protein 53 - Macaca fascicularis|
           (Crab eating macaque) (Cynomolgus monkey)
          Length = 496

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = -3

Query: 483 HSGDAADGVAMLSPATMPKVVPSETGTILDGSWPEHGALEAALWSCATQST--PRRLASR 310
           H G +       + AT     P + G+    S+  H ++EA L  C  Q T  P+ +  +
Sbjct: 287 HPGHSLVSNTKQARATALSKTPEQRGSQCSSSF--HPSVEARL-QCIPQPTEMPKPIYRK 343

Query: 309 GTLKAPV-------PSRPPTALLSYS 253
            T+K P        P+RPPT  +S+S
Sbjct: 344 STIKRPTMWNVSNNPARPPTTKISHS 369



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>Q8VCX2:S35C2_MOUSE Solute carrier family 35 member C2 - Mus musculus (Mouse)|
          Length = 364

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 372 ALEAALWSCATQSTPRRLASRGTLKAPVPSRPPTAL-LSYSPWTFLHLIAT*RPLKASSA 196
           AL  AL  C++      L+    L+   P+   TAL +  S W+FL++  +   +  SSA
Sbjct: 61  ALSRALVQCSSHKARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSA 120

Query: 195 FMFFLVQS 172
            +F L+ S
Sbjct: 121 VLFILIFS 128



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>Q6AHF1:HEM3_LEIXX Porphobilinogen deaminase - Leifsonia xyli subsp. xyli|
          Length = 329

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 215 GLQVAIKCKNVHGEYESKAVGGLDGTGAFSVPLDANLRGVDCVAQLHSAAS--NAPCSG 385
           G  + +     HG+   +++  L GTG F+  L   LR  +C   +HS      AP  G
Sbjct: 41  GFDIELVTVTTHGDTSRESLSELGGTGVFATALRDALRNGECDLVVHSLKDLPTAPAPG 99



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>Q00911:EGR4_RAT Early growth response protein 4 - Rattus norvegicus (Rat)|
          Length = 478

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
 Frame = -3

Query: 477 GDAADGVAMLSPATMPKVVPSETGTILDGSWPEHGALEAALWS-------CATQSTPRRL 319
           GD  D   +  PA  P    S +G+    + PEH     AL++        A   +P   
Sbjct: 59  GDLTDSCFLEGPAPTPPSGLSYSGSFFIQAVPEHPHDPEALFNLMSGILGLAPFPSPEAA 118

Query: 318 ASRGTLKAPVPSRPPTALLS-YSP 250
           ASR  L  P P+ P   L   YSP
Sbjct: 119 ASRSPLDVPFPAGPDALLPDLYSP 142


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 137,609,719
Number of extensions: 2714472
Number of successful extensions: 9589
Number of sequences better than 10.0: 9
Number of HSP's gapped: 9582
Number of HSP's successfully gapped: 9
Length of query: 338
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 224
Effective length of database: 69,416,809
Effective search space: 15549365216
Effective search space used: 15549365216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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