ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf113i14 |
|---|---|
| Clone Library Name | barley_pub |
>Q07469:BSPA_POPDE Bark storage protein A precursor - Populus deltoides (Eastern| poplar) (Eastern cottonwood) Length = 312 Score = 122 bits (307), Expect = 3e-27 Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 2/255 (0%) Frame = +1 Query: 208 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 387 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMAT 88 Query: 388 TTQMLLSLFRVKGIVHWGIAGNANEDLQI-GDVTIPEYWAHVSLWNWQRFGDGKDNELPL 564 T Q+LL F + G++++G AG+ ++ + GDV++P+ A +WNW++FG Sbjct: 89 TLQILLVRFNIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVWNWKKFGS-------- 140 Query: 565 EAAGDYTREYGALNFSDYTVGQSNPALSANLLNSIWYQPEEIFPKSGEPEVRQHAFWVPA 744 E G L F D+ + P NLL ++ Y+ ++F S P + FW+P Sbjct: 141 --------EKGKLVFGDF----NYPENGENLLGTVEYEKIKMFSPSEAP---KEVFWLPI 185 Query: 745 SKRYY-ALAKKLEGMELPACVNATTCLPRAPRVTRVSKGCSANVFLDNAEYRQFLRKQFG 921 +K +Y A + L+ M+L C + CLP P+V SK +++ ++ N Y FL F Sbjct: 186 TKSWYNAATEALKDMKLRKCY-SDECLPGKPKVVFGSKSSTSDFYVRNKAYGDFLNDNFD 244 Query: 922 CTPVEMESAAVALVA 966 + SA+VAL + Sbjct: 245 AKTADTASASVALTS 259
>Q09117:BSPB_POPDE Bark storage protein B precursor - Populus deltoides (Eastern| poplar) (Eastern cottonwood) Length = 312 Score = 115 bits (288), Expect = 4e-25 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 2/255 (0%) Frame = +1 Query: 208 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 387 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMAT 88 Query: 388 TTQMLLSLFRVKGIVHWGIAGNANEDLQI-GDVTIPEYWAHVSLWNWQRFGDGKDNELPL 564 T Q+LL+ F + G++++G AG+ ++ + GDV++P+ A + NW++F Sbjct: 89 TLQILLARFSIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVCNWKKF---------- 138 Query: 565 EAAGDYTREYGALNFSDYTVGQSNPALSANLLNSIWYQPEEIFPKSGEPEVRQHAFWVPA 744 E G L F D+ + P NLL ++ Y+ ++F S P + FW+P Sbjct: 139 ------RSEKGKLVFGDF----NYPENGENLLGTVEYEKIKMFSPSEAP---KEVFWLPI 185 Query: 745 SKRYY-ALAKKLEGMELPACVNATTCLPRAPRVTRVSKGCSANVFLDNAEYRQFLRKQFG 921 +K +Y A + L+ M+L C + CLP P+V SK +++ ++ N Y FL F Sbjct: 186 TKSWYNAATEALKDMKLRKCY-SDECLPGEPKVVFGSKSSTSDFYVRNKAYGDFLNDNFD 244 Query: 922 CTPVEMESAAVALVA 966 + SA+VAL + Sbjct: 245 AKTADTTSASVALTS 259
>P96122:MTNN_TREPA MTA/SAH nucleosidase - Treponema pallidum| Length = 269 Score = 56.2 bits (134), Expect = 3e-07 Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 3/235 (1%) Frame = +1 Query: 304 GRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDV 483 G F ++ VV V G+ +NA L TQ+L+S F + +++ GIAG +E L + DV Sbjct: 29 GLTFYVVSVGALQVVYVCGGVGKVNAALCTQLLISEFGARVLINTGIAGALDERLCVFDV 88 Query: 484 TIPEYWAHVSLWNWQRFGDGKDNELPLEAAGDYTREYGALNFSDYTVGQSNPALSANLLN 663 + D +++ + A G + G + D +N AL Sbjct: 89 LVSV--------------DAVQHDVDVTAFG---YQKGRIPRMDSVEWTANTALR----- 126 Query: 664 SIWYQPEEIFPK-SGEPEVRQHAFWVPASKRYYALAKKLEGMELPACVNATTCLPRAPRV 840 Y E F + +PE W EG AC + + P + RV Sbjct: 127 ---YLVREAFDLCTRDPE------WT-------------EG----ACALSGSGDPPS-RV 159 Query: 841 TRVSKG--CSANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIR 999 +R+ +G S ++F+ +A+ R + ++FG VEME AA A VA GVPF+ IR Sbjct: 160 SRLVEGRVASGDLFVSDAQTRARIIREFGAHGVEMEGAAFAHVASVNGVPFVIIR 214
>Q50673:Y2293_MYCTU Uncharacterized protein Rv2293c/MT2350 precursor - Mycobacterium| tuberculosis Length = 246 Score = 47.4 bits (111), Expect = 1e-04 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Frame = +1 Query: 307 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLF------RVKGIVHWGIAGNANEDL 468 RR+ G+I G+ V++ MTG+ ++NA TT+ + F + ++ G+AG A Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARFTCASSIAIAAVMFSGVAGGAGR-T 127 Query: 469 QIGDVTIPEYW 501 IGDV IP W Sbjct: 128 SIGDVAIPARW 138
>P67656:MTNN_MYCTU MTA/SAH nucleosidase - Mycobacterium tuberculosis| Length = 255 Score = 44.3 bits (103), Expect = 0.001 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = +1 Query: 313 FRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIP 492 F G ++ VV+ G+ +N GLT +L F + IV G+AG + +L IGD+ I Sbjct: 35 FDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIA 94 Query: 493 E 495 + Sbjct: 95 D 95
>P67657:MTNN_MYCBO MTA/SAH nucleosidase - Mycobacterium bovis| Length = 255 Score = 44.3 bits (103), Expect = 0.001 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = +1 Query: 313 FRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIP 492 F G ++ VV+ G+ +N GLT +L F + IV G+AG + +L IGD+ I Sbjct: 35 FDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIA 94 Query: 493 E 495 + Sbjct: 95 D 95
>O51931:MTNN_BUCAP MTA/SAH nucleosidase - Buchnera aphidicola subsp. Schizaphis| graminum Length = 235 Score = 43.9 bits (102), Expect = 0.002 Identities = 25/96 (26%), Positives = 54/96 (56%) Frame = +1 Query: 208 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 387 +G++ E+ + E + + K I N+ I GT + + ++++G+ ++A + Sbjct: 3 IGIIGAIEQEIRKIKEIINNLKIKKIGNIKIYT-----GTFKKIEIFLILSGIGKVSASM 57 Query: 388 TTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 495 +T + ++LF+ I++ G AG+ N L+IGD+ IP+ Sbjct: 58 STTISINLFQPDFIINSGSAGSLNACLKIGDIIIPK 93
>P57306:MTNN_BUCAI MTA/SAH nucleosidase - Buchnera aphidicola subsp. Acyrthosiphon| pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 232 Score = 41.2 bits (95), Expect = 0.010 Identities = 17/58 (29%), Positives = 35/58 (60%) Frame = +1 Query: 322 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 495 G + V ++ +G+ ++A + T +L+ L++ I++ G AG+ L+IGD+ IP+ Sbjct: 36 GKFKSHDVFLIKSGIGKVSASVATMILIDLYKPDTIINSGSAGSLQSFLKIGDIIIPK 93
>Q89AQ7:MTNN_BUCBP MTA/SAH nucleosidase - Buchnera aphidicola subsp. Baizongia pistaciae| Length = 252 Score = 39.3 bits (90), Expect = 0.037 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Frame = +1 Query: 862 SANVFLDNAEYRQFLRKQF-GCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXX 1038 S ++F+D E + L+K+F V+ME+AA+A V + +P L I+ Sbjct: 155 SGDIFIDTCEKKSLLKKRFPKAIAVDMEAAAIAHVCYQFNIPILIIK--SISDSSDINAA 212 Query: 1039 NEASTFIDIAAKNAVQVMLKFVPLLGKSAEEM 1134 + FI++A+KN+ V + + L K+ + + Sbjct: 213 DNFKYFINLASKNSSLVTINVLQTLFKNTKNI 244
>O24915:MTNN_HELPY MTA/SAH nucleosidase - Helicobacter pylori (Campylobacter pylori)| Length = 231 Score = 38.9 bits (89), Expect = 0.048 Identities = 20/94 (21%), Positives = 48/94 (51%) Frame = +1 Query: 208 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 387 +G++ E+ P+LE + + + G F G + +++ + + +++ L Sbjct: 5 IGILGAMREEITPILE----LFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTL 60 Query: 388 TTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTI 489 TT ++ F V+ ++ G+AG+ +DL+I D+ + Sbjct: 61 TTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLV 94 Score = 37.0 bits (84), Expect = 0.18 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = +1 Query: 862 SANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXXN 1041 S + F+ + E ++FL +F + VEME A+VA V GVP +R Sbjct: 150 SGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLR------SISDNADE 203 Query: 1042 EASTFIDIAAKNAVQVMLKFV 1104 EA+ D + + Q KF+ Sbjct: 204 EANMSFDAFLEKSAQTSAKFL 224
>Q9ZMY2:MTNN_HELPJ MTA/SAH nucleosidase - Helicobacter pylori J99 (Campylobacter| pylori J99) Length = 230 Score = 38.9 bits (89), Expect = 0.048 Identities = 20/94 (21%), Positives = 48/94 (51%) Frame = +1 Query: 208 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 387 +G++ E+ P+LE + + + G F G + +++ + + +++ L Sbjct: 4 IGILGAMREEITPILE----LFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTL 59 Query: 388 TTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTI 489 TT ++ F V+ ++ G+AG+ +DL+I D+ + Sbjct: 60 TTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLV 93 Score = 36.2 bits (82), Expect = 0.31 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = +1 Query: 862 SANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIR 999 S + F+ + E ++FL +F + VEME A+VA V GVP +R Sbjct: 149 SGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLR 194
>O32810:DEOD_LACLM Purine nucleoside phosphorylase deoD-type - Lactococcus lactis| subsp. cremoris (strain MG1363) Length = 234 Score = 38.5 bits (88), Expect = 0.063 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +1 Query: 322 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPEYW 501 GT +G V ++ TG+ + + + L++ + VK ++ G AG+ NED+ I D+ I + Sbjct: 51 GTYKGHRVSVMGTGMGIPSISIYANELITEYGVKRLIRVGTAGSVNEDVHIRDLVIGQAA 110 Query: 502 AHVS 513 A S Sbjct: 111 ATTS 114
>Q9CH10:DEOD_LACLA Purine nucleoside phosphorylase deoD-type - Lactococcus lactis| subsp. lactis (Streptococcus lactis) Length = 234 Score = 38.5 bits (88), Expect = 0.063 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +1 Query: 322 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPEYW 501 GT +G V ++ TG+ + + + L++ + VK ++ G AG+ NED+ I D+ I + Sbjct: 51 GTYKGHRVSVMGTGMGIPSISIYANELITEYGVKRLIRVGTAGSVNEDVHIRDLVIGQAA 110 Query: 502 AHVS 513 A S Sbjct: 111 ATTS 114
>Q56037:DEOD_STRTR Purine nucleoside phosphorylase deoD-type - Streptococcus| thermophilus Length = 216 Score = 34.3 bits (77), Expect = 1.2 Identities = 14/58 (24%), Positives = 35/58 (60%) Frame = +1 Query: 322 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDVTIPE 495 GT +G+ + ++ TG+ M + + + L+ + VK ++ G AG+ NE++ + ++ + + Sbjct: 30 GTYKGERISVMGTGMGMPSISIYARELIVDYGVKKLIRVGTAGSLNENVHVRELVLAQ 87
>Q8CWZ0:ASSY_STRMU Argininosuccinate synthase - Streptococcus mutans| Length = 396 Score = 33.9 bits (76), Expect = 1.6 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Frame = -2 Query: 417 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEA 262 PE+A G SVE A ++ D +A DG + K + L + + LAG H Sbjct: 196 PEEA---FGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGV 251 Query: 261 GRLEH-RNHLVGVGHDEADERPGAV 190 GR++H N LVG+ E E PGAV Sbjct: 252 GRIDHVENRLVGIKSREIYECPGAV 276
>Q62565:SRY_MUSSI Sex-determining region Y protein - Mus spicilegus (Steppe mouse)| Length = 311 Score = 33.1 bits (74), Expect = 2.7 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 273 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 395 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>P45113:MTNN_HAEIN MTA/SAH nucleosidase - Haemophilus influenzae| Length = 229 Score = 33.1 bits (74), Expect = 2.7 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = +1 Query: 859 CSANVFLDNAEYRQFLRKQF-GCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXX 1035 CS + F+++ + ++ F T VEME+ A+A V + VPF+ +R Sbjct: 146 CSGDSFINSEDKIAQIKADFPNVTGVEMEATAIAQVCYAFNVPFVVVRAISDGGDGKASM 205 Query: 1036 XNEASTFIDIAAKNAVQVMLKFVPLL 1113 E F+ +AAK + ++L + L Sbjct: 206 SFE--EFLPLAAKQSSALVLGMIDRL 229
>A0B9W4:RS3_METTP 30S ribosomal protein S3P - Methanosaeta thermophila (strain DSM| 6194 / PT) (Methanothrix thermophila (strain DSM 6194 / PT)) Length = 276 Score = 32.3 bits (72), Expect = 4.5 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Frame = -3 Query: 689 ISSGWY-----QMLLRRFADSAGLLCPTV*SEKLRAPYSRV 582 + GWY Q +LRR DS L C V S KL P SRV Sbjct: 103 LEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRV 143
>Q9ZWM5:CAO_CHLRE Chlorophyllide a oxygenase, chloroplast precursor - Chlamydomonas| reinhardtii Length = 645 Score = 32.3 bits (72), Expect = 4.5 Identities = 16/26 (61%), Positives = 17/26 (65%) Frame = +2 Query: 566 RPPATTLGSTAPSTSRTTPWDRATRR 643 RP ATT+ PSTS TP DRA RR Sbjct: 255 RPAATTVTQEVPSTSYGTPVDRAPRR 280
>P55519:Y4JS_RHISN Uncharacterized protein y4jS - Rhizobium sp. (strain NGR234)| Length = 413 Score = 32.0 bits (71), Expect = 5.9 Identities = 14/56 (25%), Positives = 29/56 (51%) Frame = +1 Query: 316 RFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNANEDLQIGDV 483 +FG ++ + + + ++ AG+T ++LF+ K +V GI D +GD+ Sbjct: 198 KFGANTVSAICVCLPQMGLVAAGVTAAKAITLFKPKLVVMTGICAGRKGDCDLGDI 253
>Q6DIH3:MCM2_XENTR DNA replication licensing factor mcm2 - Xenopus tropicalis (Western| clawed frog) (Silurana tropicalis) Length = 884 Score = 32.0 bits (71), Expect = 5.9 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Frame = -2 Query: 369 AQSCHDHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPG-- 196 A+ D DD S+ + + +RD GHE GR+ R L+ +E ++RP Sbjct: 77 AEGLDDEDDVEDLTASQRDAAEQAMRMRDREMGHELGRM--RRGLLYDSDEEDEDRPARK 134 Query: 195 ---AVRPADGCP 169 A R A+G P Sbjct: 135 RRMAERAAEGAP 146
>P30665:CDC54_YEAST Cell division control protein 54 - Saccharomyces cerevisiae| (Baker's yeast) Length = 933 Score = 31.6 bits (70), Expect = 7.7 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +1 Query: 217 VVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 396 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>Q9ZU07:C71BC_ARATH Cytochrome P450 71B12 - Arabidopsis thaliana (Mouse-ear cress)| Length = 496 Score = 31.6 bits (70), Expect = 7.7 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +1 Query: 412 FRVKGIVHWGIAGNANEDLQIGDVTIP-EYWAHVSLWNWQRFGD-GKDNELPL-EAAGDY 582 FR+ +V I A++D++IG IP + W HV++W R + KD E + E D Sbjct: 356 FRINPLVPLLIPREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDS 415 Query: 583 TREYGALNF 609 +Y LNF Sbjct: 416 QIDYKGLNF 424
>Q65G67:ASSY_BACLD Argininosuccinate synthase - Bacillus licheniformis (strain DSM 13| / ATCC 14580) Length = 403 Score = 31.6 bits (70), Expect = 7.7 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -2 Query: 339 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 190 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 191,843,631 Number of extensions: 3788943 Number of successful extensions: 12524 Number of sequences better than 10.0: 24 Number of HSP's gapped: 12510 Number of HSP's successfully gapped: 29 Length of query: 439 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 323 Effective length of database: 68,868,219 Effective search space: 22244434737 Effective search space used: 22244434737 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
